Lsi10G007960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G007960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal family protein
Locationchr10 : 10763286 .. 10765643 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGGTATTTTAACTTCATCTTTGCTCTTGTTTCTCACGCAATGCAAATTCTTATTTCTTTTATGTGTTTCACAAAACCTCTACCTGTTTGATGTCCCATTCTCTATGCTATTCTAATCACCATATCCCTTCTCTCAAACACTACCCTTGTAATTGTCAACTTCTCCATTTCCACTAAATGTAATTTACAAACCCTAATTTTAATTTCTCCAAGTAAGTCTGCATGCTAATTTCTGCCTCATTTCTTCAAATATTTTCCATATCAACATTCGTGTCCCTTAGAAATTACCTACTAACACTTATAAACAAGCTTCCTTAGTGGTAGAAAGTCTGTTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAATGTCTGTCTCTAGAAATTATCAGAGTTTCAGTTACCCAATTTATTGTATCCCCATGTTTCATATTTCAAACCTTGAGTGGATTTATTTTTCATTATGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTATTCTGTTGCTCCTTTATTTTAAAATTTTTTCTTATGAATTGAACCCTCATTCTTTTCCAACAACATTTGTGTTTATATAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCCTTCAACCTTTGGGTGTTTACTTTGAGTTCATTTCGCTGTAGATATTAATCATTTAAGGTGATATTAAGTTATAAAAACTCATGCATGCCATGCCTATTAATTTTTTTCTACATATCAAACTTACTGTGACTTCAGAATTACTAAACCACAACTTTTCTCACTTAGTTTTTGAAATCGTTGTTCTCTATGAAGAAAAAAAAACACATCAATTTCGTAGTTAATTTTCTTGCTCCTTTCCATTGATTGGCATTGGGAAGATTCTAGAGGCAGTACTCAGACTAGTTGAACCATGTGCAATAAGTTACTCCTTGCATAGGAGGCTAGAATGGAAAGAAGTGTATTCTCAATCTTGATTTCCCCTTATGATGAGCTATTTTCAACTGAATTCAGCCCAAAGTCGTAGCATTTTTATTTACATTATATAATTAATTAGTCCGTTCTTTTATTTCACAACATGATAGTTTAGATGAACATGAAAACATCGGAAGTTGGACCTTACAGCTGTAAGATAGAGGGCCTCCATAGTTTGTACAAGACTGTTATTTGTTATTTCTCACTGAGCTAACACTGTGTTCGAGTTATTTTATTGATCCTTTGCTCTTAATGAGTGTTTTGTGGTCCATTCGAATGTACTTGATCGTTCTCTGTTATAGCTTTTGATTCCCTAGCTTATTTTGTTGACATTCAATGTTGGTATCTCATTACTCATTTTTATCTTGATTTTAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGCGTTGATTTTATTATAATGATAATCTTGTTTTGTTGGGATTCTGTGCTGTTTATATCGTAGCTTATTGTCTTCATCCTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA

mRNA sequence

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA

Coding sequence (CDS)

ATGGTGGCCACTCTCACCTCTTCCATGCAGGCCAATATCCTTTCCGACCATTCCTTATCTCCTCCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTTCTTCTACCATTTCTTTCTTTCCCTCTTCCTTCTCTCTTCACTTCTCTGCTCTCAAAGTTCAGGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTCGAACCATTGAAACTGCATCCCGCAACCGTCATGGCTCAAACTCTTTCAGTATTCGGATGTCCTGGGACGGCCCCCTATCCTCTGTCAAATTAATTGTCCAAGGCAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTAGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTCGGGAAGGGTCCAAGGATTAGAAGATGCGAGGTTACTTTGTTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCTGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCGCGGCCGACACATGAAAGGATTTGACAGATCGAAAGTAAGAGAACCTGCACCAATAGTAGTTGAAGATGAGGAAGAGGAAGTTGTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATCGAACAACTTAAAAATATTGACCATGATTTCTATGGTTTCCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAGAGCTGAGAAATTAGAATCTGTGACGGTTGAAGCAGCCAGAGAACCATCCTTGGCGGAATGA

Protein sequence

MVATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE
Homology
[Close]
BLAST of Lsi10G007960 vs. Swiss-Prot
Match: PRSP1_SPIOL (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 325.9 bits (834), Expect = 5.1e-88
Identity = 184/314 (58.60%), Postives = 234/314 (74.52%), Query Frame = 1 

Query: 18  SLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSCKSFRTI 77
           +++P L++S S+S + SS+ ++                    LSS  S F NSC     +
Sbjct: 10  NMNPNLTNSLSNSINLSSTPTN--------------------LSSLRSTFTNSCSLGLNV 69

Query: 78  ETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLV 137
              S     +    + MSWDGPLSSVKLI+QG+NLE+++ V+ HVE+KVGK+V KHSHLV
Sbjct: 70  AVKSVQISRNKPNVVCMSWDGPLSSVKLILQGRNLEVSDNVRSHVEDKVGKSVAKHSHLV 129

Query: 138 REVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLR 197
           REVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++Y+SIDLVSSIIQRKLR
Sbjct: 130 REVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESLYSSIDLVSSIIQRKLR 189

Query: 198 KIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEE--EEV------VQEDGGEVIDEIVRTK 257
           KIK+K SD GRHMKGF+RSKVR+P P+ +  EE  EEV      V  +  + I+E+VRTK
Sbjct: 190 KIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAPVSVEDDDFIEEVVRTK 249

Query: 258 YFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLE 317
           YFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GGYGLIIPK+ G+ EKLE
Sbjct: 250 YFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGGYGLIIPKD-GKTEKLE 302

Query: 318 SVTVEAAREPSLAE 324
           S+ V+  ++PS AE
Sbjct: 310 SLPVQTDKQPSFAE 302

[Close]
BLAST of Lsi10G007960 vs. Swiss-Prot
Match: HPF_SYNY3 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hpf PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.6e-35
Identity = 86/202 (42.57%), Postives = 130/202 (64.36%), Query Frame = 1 

Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 162
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 163 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVR 222
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D+         S++ 
Sbjct: 61  AEVTVYANGT-VIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHG--NVKTSEIV 120

Query: 223 EPAPIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEE 282
           E  P+     EE ++ +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN++
Sbjct: 121 EDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRNKD 180

Query: 283 TGEINILYKRKDGGYGLIIPKE 302
           T EIN++Y R  GGYG+I P +
Sbjct: 181 TDEINVIYIRNHGGYGVIQPHQ 189

[Close]
BLAST of Lsi10G007960 vs. Swiss-Prot
Match: HPF_SYNP2 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hpf PE=2 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 1.5e-31
Identity = 80/198 (40.40%), Postives = 123/198 (62.12%), Query Frame = 1 

Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 162
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 163 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA 222
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+  +  H++     K  E  
Sbjct: 61  TVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQ----EKTSEVL 120

Query: 223 PIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGE 282
           P   +   + ++ +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T  
Sbjct: 121 P--EDPVPDNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTNA 180

Query: 283 INILYKRKDGGYGLIIPK 301
           IN++Y R  GGYG+I P+
Sbjct: 181 INVIYIRNHGGYGVIQPR 189

[Close]
BLAST of Lsi10G007960 vs. Swiss-Prot
Match: HPF_STACT (Ribosome hibernation promotion factor OS=Staphylococcus carnosus (strain TM300) GN=hpf PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-20
Identity = 66/200 (33.00%), Postives = 112/200 (56.00%), Query Frame = 1 

Query: 103 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 162
           ++  + G NL +T+A++ ++E+KVGK ++++   V  V+  + V+           + EV
Sbjct: 2   IRFEIHGDNLTITDAIRNYIEDKVGK-LERYFTNVPNVNAHVKVKTYANSS----TKIEV 61

Query: 163 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA 222
           T+       +RAEE  + +YA IDL+++ ++R++RK K + + + R      +    EP 
Sbjct: 62  TI-PLNDVTLRAEERNDDLYAGIDLITNKLERQVRKYKTRVNRKKR------KESEHEPF 121

Query: 223 PIVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGE 282
           P   E   E  V  D  + I EI+R+K F + P+  EEA+ Q+  + HDF+ F + ET  
Sbjct: 122 PATPETPPETAVDHDKDDEI-EIIRSKQFSLKPMDSEEAVLQMDLLGHDFFIFNDRETDG 181

Query: 283 INILYKRKDGGYGLIIPKEN 303
            +I+Y+RKDG YGLI   EN
Sbjct: 182 TSIVYRRKDGKYGLIETVEN 188

[Close]
BLAST of Lsi10G007960 vs. Swiss-Prot
Match: HPF_DEIRA (Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) GN=hpf PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 4.6e-20
Identity = 65/194 (33.51%), Postives = 112/194 (57.73%), Query Frame = 1 

Query: 107 VQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFT 166
           + G+N+E+TE ++++VEEK+ + + +++  + +  V L+VR  +     R  R EV L  
Sbjct: 6   LSGRNVEVTEPMREYVEEKLSR-LDRYTDQITDARVTLTVR--DVRNNERRNRVEVQL-N 65

Query: 167 KKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVRE---PAP 226
              G++RAEE    +YA+ID  S +++R+LRK K       R+MK     +      PA 
Sbjct: 66  VPGGIIRAEEHHADMYAAIDKASDVLERQLRKFKT------RYMKQRQEGRPEPLPGPAE 125

Query: 227 IVVEDEEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEI 286
             V  +      +D  E   EIVR K F++ P++ E+A+ Q++ + HDFY F++ + G+ 
Sbjct: 126 AEVNAQGSGAAMDDVSEFHPEIVRQKRFELRPMSAEDAVVQMEALGHDFYVFQDLQ-GQT 185

Query: 287 NILYKRKDGGYGLI 298
            ++Y+R+DG YGLI
Sbjct: 186 GVVYRRRDGHYGLI 188

[Close]
BLAST of Lsi10G007960 vs. TrEMBL
Match: A0A0A0LMH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337790 PE=4 SV=1)

HSP 1 Score: 397.5 bits (1020), Expect = 1.5e-107
Identity = 215/249 (86.35%), Postives = 228/249 (91.57%), Query Frame = 1 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSLSPP  SS            ST+S+FP+SFSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSS------------STVSYFPASFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 237

Query: 242 IDEIVRTKY 251
           IDE++ + +
Sbjct: 241 IDEVIPSTF 237

[Close]
BLAST of Lsi10G007960 vs. TrEMBL
Match: M5X1N6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009612mg PE=4 SV=1)

HSP 1 Score: 390.6 bits (1002), Expect = 1.9e-105
Identity = 207/273 (75.82%), Postives = 231/273 (84.62%), Query Frame = 1 

Query: 56  KVQALSSNTSAFFNSCKSFRTIETASR--NRHGSNSFSIRMSWDGPLSSVKLIVQGKNLE 115
           ++  LSS +S FFN  K  + I  A R  N+   NS S+RMSWDGPLSSVKLIVQG+NLE
Sbjct: 13  QIFTLSSTSSTFFNPAKHLKPISIAIRPTNKCHGNSLSVRMSWDGPLSSVKLIVQGRNLE 72

Query: 116 LTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 175
           L+EAVKKHVE+KVGKAVQKHSHL RE DVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV R
Sbjct: 73  LSEAVKKHVEDKVGKAVQKHSHLAREADVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVFR 132

Query: 176 AEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA-PIVVEDEEEE 235
           AEE+AET+YASIDL SSIIQRKLRKIKEKDSD GRHMKGF+R KVREPA  IVVE+EEEE
Sbjct: 133 AEEEAETLYASIDLASSIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPATQIVVEEEEEE 192

Query: 236 VV--QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 295
            V  +E+G  + DEIVR KYFDMPPLTV EA++QL+N+DHDFY FRNEETGEINI+YKRK
Sbjct: 193 TVPQEEEGDFINDEIVRMKYFDMPPLTVAEAVDQLENVDHDFYAFRNEETGEINIIYKRK 252

Query: 296 DGGYGLIIPKENGRAEKLESVTVEAAREPSLAE 324
           +GGYGLIIPK NG+AEK   V +E ARE SLAE
Sbjct: 253 EGGYGLIIPKGNGKAEKSGHVVIERAREHSLAE 285

[Close]
BLAST of Lsi10G007960 vs. TrEMBL
Match: A0A067LAT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.3e-103
Identity = 213/322 (66.15%), Postives = 251/322 (77.95%), Query Frame = 1 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATL  S+Q +    H  S  LSS +++++SSSS            + L    L+  + S
Sbjct: 1   MATLLGSLQTSF---HHPSVSLSSKAAATTSSSSI-----------YVLSSKNLRFPSFS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           S+ ++F N     + IE     R G  S ++RMSWDGPLSSVKLI+QGKNLELT+ VK H
Sbjct: 61  SHKTSFLNPLSDVKCIEV----RRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VE+KVGKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+
Sbjct: 121 VEDKVGKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETI 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           YASIDL SSI+QRKLRKIKEK+SD GRHMKGF+R KVREP  +VV+D+ +EV Q +  E 
Sbjct: 181 YASIDLASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEY 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDE+VRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK 
Sbjct: 241 IDEVVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKG 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
            G AEK+E++ VE AREPSL E
Sbjct: 301 EGGAEKMETLVVEPAREPSLTE 304

[Close]
BLAST of Lsi10G007960 vs. TrEMBL
Match: A0A061G1K9_THECC (Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 SV=1)

HSP 1 Score: 383.6 bits (984), Expect = 2.3e-103
Identity = 224/321 (69.78%), Postives = 250/321 (77.88%), Query Frame = 1 

Query: 15  SDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALSSNTSAFFNSC-KS 74
           S  S   P+S S SSSS  SSS+SS   F P+         ++ +L S  S+F N    S
Sbjct: 9   SQTSFHHPISVSVSSSSCHSSSASSVSLFTPTK-------PRIPSLPSYKSSFLNPIGNS 68

Query: 75  FRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKH 134
           F+ IET  R      S ++RMSWDGPLSSVKLI+QGKNLELT+ VK+HVEEKVGKAVQKH
Sbjct: 69  FKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHVEEKVGKAVQKH 128

Query: 135 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQ 194
           SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY SIDLVSSI+Q
Sbjct: 129 SHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYGSIDLVSSILQ 188

Query: 195 RKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEV-----------VQEDGGEVI 254
           RKLRKIKEK+SD GRHMKGF+R KVREP  ++VEDE E V            QED G +I
Sbjct: 189 RKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEAVPEQEDDG-LI 248

Query: 255 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 314
           DEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK GGYGLIIPK N
Sbjct: 249 DEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKAGGYGLIIPKGN 308

Query: 315 GRAEKLESVTVEAAREPSLAE 324
           G+AEKLE V V++A++ S  E
Sbjct: 309 GKAEKLEPVVVDSAKQHSFVE 320

[Close]
BLAST of Lsi10G007960 vs. TrEMBL
Match: F6H768_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00940 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 4.3e-102
Identity = 196/275 (71.27%), Postives = 229/275 (83.27%), Query Frame = 1 

Query: 61  SSNTSAFFNSCKSFRTIETASRNRHGSN------------SFSIRMSWDGPLSSVKLIVQ 120
           S  +S+F  S KS R++   S +  GS+              ++RMSWDGPLSSVKLI+Q
Sbjct: 24  SPYSSSFLASSKSLRSLSNLSSSSGGSSILKLNATTRQTKPLAVRMSWDGPLSSVKLILQ 83

Query: 121 GKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKK 180
           GKNLELT+ V+ HVEEKVGKAVQKHSHLVREVDVRLS+RGGE GKGP+IRRCEVTLFTKK
Sbjct: 84  GKNLELTDTVRSHVEEKVGKAVQKHSHLVREVDVRLSIRGGELGKGPKIRRCEVTLFTKK 143

Query: 181 HGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVED 240
           HGVVRAEE AET+Y SID+VSSIIQRKLRKIKEKDSD GRHMKGF+R KVR+P   +VE+
Sbjct: 144 HGVVRAEEHAETLYGSIDMVSSIIQRKLRKIKEKDSDHGRHMKGFNRLKVRDPETPLVEE 203

Query: 241 EEEEVVQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYK 300
           E + V Q++ G++I+EIVRTKYFDMPPLTV EA+EQL+N+DHDF+GFRNEETGEINILYK
Sbjct: 204 EADVVPQKEDGDLINEIVRTKYFDMPPLTVPEAVEQLENVDHDFFGFRNEETGEINILYK 263

Query: 301 RKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE 324
           RK GGYGLIIPKENG+ E+LE V V++ REPSLAE
Sbjct: 264 RKAGGYGLIIPKENGKTEELEPVVVKSDREPSLAE 298

[Close]
BLAST of Lsi10G007960 vs. TAIR10
Match: AT5G24490.1 (AT5G24490.1 30S ribosomal protein, putative)

HSP 1 Score: 352.1 bits (902), Expect = 3.8e-97
Identity = 182/248 (73.39%), Postives = 214/248 (86.29%), Query Frame = 1 

Query: 82  RNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 141
           R+ +  +S +++MSWDGPL+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 142 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 201
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 202 KDSDRGRHMKGFDRSKVREPA--PIV--VEDEEEEVV--QEDGGEVIDEIVRTKYFDMPP 261
           KDSD GRHMKGF+R KVREP   P+V  VED  +  V  +E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 262 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGRAEKLESVTVEA 321
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK++G+AEK+E +  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 322 AREPSLAE 324
             E S AE
Sbjct: 301 LNEHSFAE 308

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: gi|449459188|ref|XP_004147328.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus])

HSP 1 Score: 545.0 bits (1403), Expect = 8.6e-152
Identity = 290/322 (90.06%), Postives = 300/322 (93.17%), Query Frame = 1 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSLSPP  SS            ST+S+FP+SFSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSS------------STVSYFPASFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
           NG AEKLE VT+EA REPSLAE
Sbjct: 301 NGTAEKLEPVTIEATREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: gi|659121787|ref|XP_008460813.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo])

HSP 1 Score: 535.4 bits (1378), Expect = 6.8e-149
Identity = 288/322 (89.44%), Postives = 297/322 (92.24%), Query Frame = 1 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSL PP              SSST+S+FP+ FSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLPPP------------HPSSSTVSYFPAPFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDG LSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 240

Query: 242 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 301
           IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE
Sbjct: 241 IDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKE 300

Query: 302 NGRAEKLESVTVEAAREPSLAE 324
           NG AEKLE VTVEAAREPSLAE
Sbjct: 301 NGTAEKLEPVTVEAAREPSLAE 310

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: gi|700207115|gb|KGN62234.1| (hypothetical protein Csa_2G337790 [Cucumis sativus])

HSP 1 Score: 397.5 bits (1020), Expect = 2.2e-107
Identity = 215/249 (86.35%), Postives = 228/249 (91.57%), Query Frame = 1 

Query: 2   VATLTSSMQANILSDHSLSPPLSSSSSSSSSSSSSSSSTISFFPSSFSLHFSALKVQALS 61
           +ATLTSSMQAN+LSDHSLSPP  SS            ST+S+FP+SFSLHFSALKV ALS
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSS------------STVSYFPASFSLHFSALKVHALS 60

Query: 62  SNTSAFFNSCKSFRTIETASRNRHGSNSFSIRMSWDGPLSSVKLIVQGKNLELTEAVKKH 121
           SN SAFFNSCK+F TIETASRNRH SNSFSIRM+WDGPLSSVKLIVQGKNLELTEAVKKH
Sbjct: 61  SNASAFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKH 120

Query: 122 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 181
           VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV
Sbjct: 121 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 180

Query: 182 YASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPAPIVVEDEEEEVVQEDGGEV 241
           +ASIDLVSSIIQRKLRKIKEKDSDRGRH+KGFDRSKVREPAPIVVEDEEEEV QEDGGEV
Sbjct: 181 FASIDLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEV 237

Query: 242 IDEIVRTKY 251
           IDE++ + +
Sbjct: 241 IDEVIPSTF 237

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: gi|596015068|ref|XP_007218778.1| (hypothetical protein PRUPE_ppa009612mg [Prunus persica])

HSP 1 Score: 390.6 bits (1002), Expect = 2.7e-105
Identity = 207/273 (75.82%), Postives = 231/273 (84.62%), Query Frame = 1 

Query: 56  KVQALSSNTSAFFNSCKSFRTIETASR--NRHGSNSFSIRMSWDGPLSSVKLIVQGKNLE 115
           ++  LSS +S FFN  K  + I  A R  N+   NS S+RMSWDGPLSSVKLIVQG+NLE
Sbjct: 13  QIFTLSSTSSTFFNPAKHLKPISIAIRPTNKCHGNSLSVRMSWDGPLSSVKLIVQGRNLE 72

Query: 116 LTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVR 175
           L+EAVKKHVE+KVGKAVQKHSHL RE DVRLSVRGGEFGKGPRIRRCEVTLFTKKHGV R
Sbjct: 73  LSEAVKKHVEDKVGKAVQKHSHLAREADVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVFR 132

Query: 176 AEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA-PIVVEDEEEE 235
           AEE+AET+YASIDL SSIIQRKLRKIKEKDSD GRHMKGF+R KVREPA  IVVE+EEEE
Sbjct: 133 AEEEAETLYASIDLASSIIQRKLRKIKEKDSDHGRHMKGFNRLKVREPATQIVVEEEEEE 192

Query: 236 VV--QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRK 295
            V  +E+G  + DEIVR KYFDMPPLTV EA++QL+N+DHDFY FRNEETGEINI+YKRK
Sbjct: 193 TVPQEEEGDFINDEIVRMKYFDMPPLTVAEAVDQLENVDHDFYAFRNEETGEINIIYKRK 252

Query: 296 DGGYGLIIPKENGRAEKLESVTVEAAREPSLAE 324
           +GGYGLIIPK NG+AEK   V +E ARE SLAE
Sbjct: 253 EGGYGLIIPKGNGKAEKSGHVVIERAREHSLAE 285

[Close]
BLAST of Lsi10G007960 vs. NCBI nr
Match: gi|657970152|ref|XP_008376813.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Malus domestica])

HSP 1 Score: 387.1 bits (993), Expect = 3.0e-104
Identity = 205/275 (74.55%), Postives = 232/275 (84.36%), Query Frame = 1 

Query: 52  FSALKVQALSSNTSAFFNSCKSFRTIETASRNRHG-SNSFSIRMSWDGPLSSVKLIVQGK 111
           F   ++  LSS++S F N  K+ + I  A R R     S S++MSWDGPLSSVKLI+QGK
Sbjct: 19  FQKPQIFTLSSSSSNFLNPSKNLKPIAIAIRPRKWRGKSLSVQMSWDGPLSSVKLIIQGK 78

Query: 112 NLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHG 171
           NLEL+EAVKKHVE+KVGKAVQKHSHLVRE DVRLSVRGGE GKGPRIRRCEVTLFTKKHG
Sbjct: 79  NLELSEAVKKHVEDKVGKAVQKHSHLVREADVRLSVRGGELGKGPRIRRCEVTLFTKKHG 138

Query: 172 VVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDRGRHMKGFDRSKVREPA-PIVVEDE 231
           V RAEE+AET+YASIDL SSIIQRKLRKIKEK+SD GRHMKGF+RSKVREPA  +V EDE
Sbjct: 139 VFRAEEEAETLYASIDLASSIIQRKLRKIKEKESDHGRHMKGFNRSKVREPAMQVVAEDE 198

Query: 232 EEEVV-QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYK 291
           EEE V QE   + IDE+VRTKYFDMPPLTV EA++QL+N+DHDFY FRNEETGEIN++YK
Sbjct: 199 EEEAVPQEQEEDFIDEVVRTKYFDMPPLTVAEAVDQLENVDHDFYAFRNEETGEINVIYK 258

Query: 292 RKDGGYGLIIPKENGRAEKLESVTVEAAREPSLAE 324
           R++GGYGLIIPK NG+AEK E V VE ARE SLAE
Sbjct: 259 REEGGYGLIIPKGNGKAEKSEHVVVERARERSLAE 293

The following BLAST results are available for this feature:
BLAST of Lsi10G007960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRSP1_SPIOL5.1e-8858.60Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 ... [more]
HPF_SYNY36.6e-3542.57Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka... [more]
HPF_SYNP21.5e-3140.40Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ... [more]
HPF_STACT3.5e-2033.00Ribosome hibernation promotion factor OS=Staphylococcus carnosus (strain TM300) ... [more]
HPF_DEIRA4.6e-2033.51Ribosome hibernation promotion factor OS=Deinococcus radiodurans (strain ATCC 13... [more]
BLAST of Lsi10G007960 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMH1_CUCSA1.5e-10786.35Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337790 PE=4 SV=1[more]
M5X1N6_PRUPE1.9e-10575.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009612mg PE=4 SV=1[more]
A0A067LAT5_JATCU2.3e-10366.15Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1[more]
A0A061G1K9_THECC2.3e-10369.78Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 S... [more]
F6H768_VITVI4.3e-10271.27Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00940 PE=4 SV=... [more]
BLAST of Lsi10G007960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G24490.13.8e-9773.39 30S ribosomal protein, putative[more]
BLAST of Lsi10G007960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449459188|ref|XP_004147328.1|8.6e-15290.06PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus][more]
gi|659121787|ref|XP_008460813.1|6.8e-14989.44PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo][more]
gi|700207115|gb|KGN62234.1|2.2e-10786.35hypothetical protein Csa_2G337790 [Cucumis sativus][more]
gi|596015068|ref|XP_007218778.1|2.7e-10575.82hypothetical protein PRUPE_ppa009612mg [Prunus persica][more]
gi|657970152|ref|XP_008376813.1|3.0e-10474.55PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0044238primary metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR003489RHF/RaiA
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044238 primary metabolic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G007960.1Lsi10G007960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinGENE3DG3DSA:3.30.160.100coord: 104..202
score: 1.1
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinPFAMPF02482Ribosomal_S30AEcoord: 106..202
score: 3.6
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinTIGRFAMsTIGR00741TIGR00741coord: 104..206
score: 1.0
IPR003489Ribosomal protein S30Ae/sigma 54 modulation proteinunknownSSF69754Ribosome binding protein Y (YfiA homologue)coord: 104..209
score: 2.62
NoneNo IPR availablePANTHERPTHR33231FAMILY NOT NAMEDcoord: 31..315
score: 2.0E
NoneNo IPR availablePANTHERPTHR33231:SF130S RIBOSOMAL PROTEIN-RELATEDcoord: 31..315
score: 2.0E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G007960Csa2G337790Cucumber (Chinese Long) v2culsiB095
Lsi10G007960CSPI02G16450Wild cucumber (PI 183967)cpilsiB093
Lsi10G007960Cucsa.228170Cucumber (Gy14) v1cgylsiB373
Lsi10G007960Cla007861Watermelon (97103) v1lsiwmB066
Lsi10G007960ClCG02G000010Watermelon (Charleston Gray)lsiwcgB056
Lsi10G007960Cla97C02G026210Watermelon (97103) v2lsiwmbB053
Lsi10G007960Bhi10G001402Wax gourdlsiwgoB071
Lsi10G007960CsGy2G016060Cucumber (Gy14) v2cgyblsiB086
Lsi10G007960CsaV3_2G019690Cucumber (Chinese Long) v3cuclsiB106
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G007960Cucumber (Gy14) v2cgyblsiB088
Lsi10G007960Cucumber (Chinese Long) v3cuclsiB107