ClCG02G000010 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G000010
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	30S ribosomal family protein
Location	CG_Chr02 : 44065 .. 48565 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGGTATTTCATTTAGCTTCATCTTTGCTATTGTTTCTCATGCAATGCGACTTCTTCTTTTCACTATCTTGAATTGTTAATTCTTCCCATGTTTGATTCAGTAATTACTATCAAATGAATCCACATAACCTCTAACTTTTTCATACCCCATTCTCTATGCTATTTCAATCACCATATCCCTTTACTCAAACCCTACCCTTGTATTTGCTGACTTCTCCATTTCCACTACATTTAGTTTACAAACCCTAAACTCTGCCTCATTTCTTTAAATATTTTCCGTATCAACATTCGTGGCCCTTCTCCATTCTTCTTTTTACTCTGCACACCTCTTTGAAGTGAACGCATCGCATAAGGAATTCACTATCATTTTCAAAAACTCCTCCCTCCATCTCCTAATCTCTCAGCGAATTTTGATATTGATATTCTATATCTTCGCTTATTGCAGCTAGAAGATTGTTCCTTGGTCAAAGAATCAGGGTGCATTCACTCTCTTCAATATCAGCATCTAAACCAAATTTATTCTTCTCTACATTCTCATCAAACACAACCATTTTTCCTTCATAATCATTCCATTCCAGGAAACGCACGATGGCTACTTCATACTTCCCAATTTCAACCGTTATCTGCTTGAAGGAATCCTTTGTAAAATTGGATCAAGATATCTGTAGGCCCCTGTTTCTTTCACTTAATACAAGACACACAACTCAAGCTTTATCATCCTGCTTAGATCTTGAACATGATACACGCATCAAAAGCAGTCAACACATGTAATAAAAGACTGCTGCCTCGTTATGGAAATATTAGAGTTATTAGTATGGTTATTAGAAGGGCATATTAGTAATTAGTTAGTAAGTTTGTTAGAGCTTTTAGTTATAAATAGAGAGAGTTGGTTGGGAGCAAGGTGTGGATCATTTTGGTAGTAATTTCCTTTGTGGGAATTTAAGTGGGTGTAACCCTCTCGAAAGGAAAGGCTATGATATTGTAGTTTCTTCATTCATCTTGCAATATAATTCTATCTTTTTGTGTTTGTTGTTCTTCAATGTTCATGCTAGCTGATAACCCAACTACACCCTAATCTAGATGATACGGATTTGACACCAAATATTAGGAATAAGCTCTTCAAAGAAATAAAAGCAGGAGAAATATACTGTTAAAAACATGCTGGAAATGATAACAAAGTTTAATAAGGTGGTCATCATACTGAACTTACCTACTAGATGCAGATAAAGAAATTACCTACTAACACTTATAAACAAGCTACCTTAGTTGTAGAAACTCTGCTGCTGCAAAATGACAAGACCACCTACTAACTAGAAATTCTAACATGTACTTCTAGAAGTTGTCCGAGTTTCAGTTACCCAATTTATGGTATCTCAATGTTTCAAATGTCAAACATTGAGTGGATTGAGGGTTTTGACTTTAGTTTGGGAGAAGGGATGTTCGTGTTTGGAGTCCTAACCCATTGGAGGGTTTCTCTTGTACGTCGTTCTTTAGGATTTTATTAGATCCTTCTCTTGTTGTTGAGTCGGTCTTTGATGTTTTATGGAGGATTAAGATTCCAAAGAAAGTTAAGTTCTTTTCCTAGCAAGTTTTGCTTGGTCGTGTGAATACGATGGATACGATTTTGAGAAAGATGTCTTCGTTAATGGGTCTATTTTGTTGTATTTTTTGTCGGAAGATGGAGGAAACCTAGATCACCTTCTTGGAGTGTCAGTTTGCGAGATCTGTTTGGAACGGTTTCTTGCAAGAGTTTGATTTTAATCTTGCTCACCGGTTGATAATTGGGGAGTTCCTTCTCCATCCGTCTTTCAAAGAGAAAGGTCATTTTCTTTGATTTGTGGGGGTGTGTGTTTTGTGGGATCTTTGGGAGGAGAGAAACAATAGAGTGTTTCGGGTTGTGGAGGGACCCTAGCAAGGTTTGGTCTTTATTGAGGTTTCATGTTTCTCTTTGGGCTTCGGTTTTGAAGGCTTTTTGTTATCACTCTCTAGTCAATATCTTACCTAGATGGAAACACTTTCTTTAGTTGGAGATTTTTTTTTGTGTGAGTTTTCTTTTTTTGTATGCCCTTGCATTCTTTCCTTTTTTTTCCTCAATGAAATAGTTGTTTCTGTATTTTTTTTAAAAAAATACAATAATACAAAAAGAAAAAAATACAAAAATAAAAATAAAATAAAATAAAGAAAAAACATTGAGTTGATTTATGTTTAATTGTGCAAAAAACTAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTACTCTATTGCTCCTTTATTTTAAATTTATCCATATGAATTGAACCCTCATTCGTTTCCAAAAACATTTGTGTTTATATAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGGTTATTCTTCCAACCTTTGGGTTTTTACTTTGAGTTCATTTAAGGTGATATTAGCTTATAAAAGCTCATGTATGCCATGCCTTATGCCATGCCTGTTAATTATTTTCTACATGTCGAAGCTTATTATGAAACTTACTAAACCACATCTTTCCTCACTTAGTTATTGAAAACATTGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACCATCAATTAGTAGTGGGAAAACTCCAGATGCAGTACTCAGATTAGTTGAACCATGTGCAATAAGTTACTCCTCGCATAGGTGGGAAGAACGGAAAGAAATGCATTCTCAATCTTGATTACCCCCCTCTGATGTGCTATTCTCAACTGAGTTCAGCTCAAAGTCCTATTTTTATTTACATTATAGGATTAATAAGTCAGTTCTTTTATTTCACAACATGACATCTTAGATAAACATGAAAAAATCGGAAGTTGGACCTGACAACTGTAAGATAGAGGGCCTCCATAGTTTGTAGGAGTCTGTTATCTGTTATTTCTCACAGAGCTAACATTGTGTTGACTGTTATTTTATTGATCCTTTGCTCCTCATGAGTGTTTTGTGGTCCATTCCAATGTACTTGATCGTTATAGCTTTTGATTTACTTGCTGCTTATTTTGTTTACATTCAATTTTGGTTGGAAGGACTTATGATATTCGTCCTTTTTAGATAACGATCATGTATTATACATATTCTGGAAGCTCGTGAATGATATGTACACATGATTAAAATATTAATTTTTCCTTTTCATGCTAGCAATTTTTTATTTTGGTATCTCATTGCTCATTTTTATCTTGATTTCAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGCGTTGATTTGATTATTATGATGATCTTGCTTTGTTGGGATTCTTTGCTGTTTATATCGTAGCTTATTGTCTGAATCTTTGGCCCAGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAGACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTTGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAATGAGATGCAAAAAGTATTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGTTCTGTTTATATTGTTG

mRNA sequence

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGATGGGAGTTCACGGAGGAATTTTCATGTTCTAGATATCTTGCCACTGTTACATTCGCTTAAGACTGCAAAACTTCGACTTCAACATGCATCTGAAGGCCTTTCTTGTAGAGAGTATATAGATTTAGATTTGAGGTTATTTGGTGATGAAGACAATATTGGAACAAGAAATCAGTAAAAAGTAAAATGAGATGCAAAAAGTATTCTATGGAATGAATGATTCAGCTTGCAGGGGTGTTACCATGAAAATATACTGTTTTCTTTTGTAATAATGGTTTCTTTTCCCCTAGCGTGGCCAGTTCTGTTTATATTGTTG

Coding sequence (CDS)

ATGGTAATGGCCACTCTCACCTCTTCTATGCAGGCCAATCTCCTTTCCCATCACTCCTTATCTTCTTCTACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCATTTCTTTCTTTCCAGCTTCCTTCTCTCTTCACTTCTCTGCGCTCAAAGTTCATGCTCTTTCTTCCAATACTTCTGCTTTCTTCAACTCCTGCAAGAGCTTTGGAACCATTGAGACTCCATCCCGCAGCCGTCATGCCTCAAACTCTTTCAATGTTCGGATGTCCTGGGACGGCCACCTCTCCTCTGTCAAATTAATTGTCCAAGGGAAAAATTTGGAGTTGACTGAAGCAGTTAAGAAGCATGTGGAAGAGAAGGTTGGCAAGGCAGTCCAGAAGCACAGTCACTTAGTGAGAGAAGTAGATGTCAGGCTTTCAGTTAGAGGTGGGGAGTTTGGGAAGGGTCCAAGGATAAGAAGATGTGAGGTTACTTTATTCACAAAGAAGCATGGAGTTGTACGGGCAGAGGAAGATGCCGAGACCGTCTATGCAAGCATTGATTTGGTATCCTCCATCATACAGAGGAAGTTGAGAAAGATTAAAGAGAAAGATTCAGACCATGGCCGACACATGAAAGGATTTGACAGATTGAAAGTAAGAGAACCTGCACCAATAGTAGTTGGAGATGAGGATGAGGAAGTTTTTCAAGAAGATGGTGGAGAAGTTATTGATGAGATTGTTCGGACAAAATACTTCGATATGCCACCTTTGACAGTTGAAGAAGCAATTGAACAACTCAAAAATATTGACCATGATTTCTATGGTTTTCGGAATGAAGAAACTGGTGAGATTAACATCTTATATAAAAGAAAGGATGGAGGATATGGACTTATTATCCCAAAAGAAAATGGCAAAGCTGAGAAATTAGAACCTGTCACAGTTGAAGCAGCCAGAGAACCATCCTTAGCGGAATGA

Protein sequence

MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEAAREPSLAE

Homology

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BLAST of ClCG02G000010 vs. Swiss-Prot
Match: PRSP1_SPIOL (Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 SV=2)

HSP 1 Score: 344.0 bits (881), Expect = 1.8e-93
Identity = 192/330 (58.18%), Postives = 239/330 (72.42%), Query Frame = 1


Query: 3   MATL-TSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNT 62
           MATL TS++  N    +SLS+S + SS+ ++                        LSS  
Sbjct: 1   MATLCTSAINMNPNLTNSLSNSINLSSTPTN------------------------LSSLR 60

Query: 63  SAFFNSCKSFG---TIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKH 122
           S F NSC S G    +++   SR+  N   V MSWDG LSSVKLI+QG+NLE+++ V+ H
Sbjct: 61  STFTNSC-SLGLNVAVKSVQISRNKPNV--VCMSWDGPLSSVKLILQGRNLEVSDNVRSH 120

Query: 123 VEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV 182
           VE+KVGK+V KHSHLVREVDVRLS RGG+  KGP++RRCEVTLFTK+HGV+RAEEDAE++
Sbjct: 121 VEDKVGKSVAKHSHLVREVDVRLSARGGDLSKGPKLRRCEVTLFTKRHGVIRAEEDAESL 180

Query: 183 YASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDED--EEV------ 242
           Y+SIDLVSSIIQRKLRKIK+K SDHGRHMKGF+R KVR+P P+ +  E+  EEV      
Sbjct: 181 YSSIDLVSSIIQRKLRKIKDKVSDHGRHMKGFNRSKVRDPEPVRITREEVLEEVESAPAP 240

Query: 243 FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGG 302
              +  + I+E+VRTKYFDMPPLT+ EA+EQL+N+DHDFY FRNEETG+INILYKRK+GG
Sbjct: 241 VSVEDDDFIEEVVRTKYFDMPPLTITEAVEQLENVDHDFYAFRNEETGDINILYKRKEGG 300

Query: 303 YGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           YGLIIPK+ GK EKLE + V+  ++PS AE
Sbjct: 301 YGLIIPKD-GKTEKLESLPVQTDKQPSFAE 302

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BLAST of ClCG02G000010 vs. Swiss-Prot
Match: HPF_SYNY3 (Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=hpf PE=3 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.2e-35
Identity = 86/204 (42.16%), Postives = 128/204 (62.75%), Query Frame = 1


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRI---RR 159
           +KL++QG N+ +TEA+  +VEEKV +AV+   +L  +VDV LSV      +  RI    +
Sbjct: 1   MKLLIQGNNITVTEAIHDYVEEKVERAVKHFQNLTTKVDVHLSV-----ARNARITNKHK 60

Query: 160 CEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEK--DSDHGRHMKGFDRLK 219
            EVT++     V+RA+E +E +YASIDLV+  I R+LRK KE+  D  HG         +
Sbjct: 61  AEVTVYANGT-VIRAQEGSENLYASIDLVADKIARQLRKYKERIQDKQHGNVKTS----E 120

Query: 220 VREPAPIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRN 279
           + E  P+     +E +  +   E+  E++R KYF MPP+ +E+A+EQL+ +DHDFY FRN
Sbjct: 121 IVEDKPV-----EENLIGDRAPELPSEVLRMKYFAMPPMAIEDALEQLQLVDHDFYMFRN 180

Query: 280 EETGEINILYKRKDGGYGLIIPKE 299
           ++T EIN++Y R  GGYG+I P +
Sbjct: 181 KDTDEINVIYIRNHGGYGVIQPHQ 189

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BLAST of ClCG02G000010 vs. Swiss-Prot
Match: HPF_SYNP2 (Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=hpf PE=2 SV=2)

HSP 1 Score: 141.4 bits (355), Expect = 1.8e-32
Identity = 79/199 (39.70%), Postives = 119/199 (59.80%), Query Frame = 1


Query: 100 VKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEV 159
           +KL++QG N+ +TE++  +VE K+ KA +       +VDV LSV      +     + EV
Sbjct: 1   MKLLIQGNNIAVTESIHDYVESKLEKATKHFQTFATKVDVHLSVANN--ARITDKHKAEV 60

Query: 160 TLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKEKDSDHGRHMKG-FDRLKVREP 219
           T++     V+RA+E +E +YASIDLVS  I R+LRK KEK+     H++     +   +P
Sbjct: 61  TVYANGT-VIRAQEGSENLYASIDLVSDKIARQLRKYKEKNFGKKTHVQEKTSEVLPEDP 120

Query: 220 APIVVGDEDEEVFQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETG 279
            P       + +  +   E+  E+VR KYF MPP+T++EA+EQL+ +DHDFY F N++T 
Sbjct: 121 VP-------DNLIGDRAPELPSEVVRMKYFAMPPMTIDEALEQLQLVDHDFYMFLNKDTN 180

Query: 280 EINILYKRKDGGYGLIIPK 298
            IN++Y R  GGYG+I P+
Sbjct: 181 AINVIYIRNHGGYGVIQPR 189

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BLAST of ClCG02G000010 vs. TrEMBL
Match: A0A061G1K9_THECC (Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 7.1e-113
Identity = 231/332 (69.58%), Postives = 253/332 (76.20%), Query Frame = 1


Query: 1   MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSN 60
           M  A L SS  +    HH +S S SSSS  SSS+SS   F P          ++ +L S 
Sbjct: 1   MATALLASSQTS---FHHPISVSVSSSSCHSSSASSVSLFTPTK-------PRIPSLPSY 60

Query: 61  TSAFFNSC-KSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHV 120
            S+F N    SF  IET  R      S  VRMSWDG LSSVKLI+QGKNLELT+ VK+HV
Sbjct: 61  KSSFLNPIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEV--------- 240
            SIDLVSSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  ++V DE E V         
Sbjct: 181 GSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEA 240

Query: 241 --FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKD 300
              QED G +IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK 
Sbjct: 241 VPEQEDDG-LIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKA 300

Query: 301 GGYGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           GGYGLIIPK NGKAEKLEPV V++A++ S  E
Sbjct: 301 GGYGLIIPKGNGKAEKLEPVVVDSAKQHSFVE 320

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BLAST of ClCG02G000010 vs. TrEMBL
Match: A0A067LAT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1)

HSP 1 Score: 407.1 bits (1045), Expect = 1.9e-110
Identity = 216/318 (67.92%), Postives = 249/318 (78.30%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATL  S+Q +   HH    S S SS +++++SSS  +  +S +L F +      SS+ +
Sbjct: 1   MATLLGSLQTSF--HHP---SVSLSSKAAATTSSSSIYVLSSKNLRFPSF-----SSHKT 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           +F N       IE     R    S  VRMSWDG LSSVKLI+QGKNLELT+ VK HVE+K
Sbjct: 61  SFLNPLSDVKCIEV----RRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DL SSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  +VV D+ +EV Q +  E IDE+
Sbjct: 181 DLASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEYIDEV 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK  G A
Sbjct: 241 VRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGEGGA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EK+E + VE AREPSL E
Sbjct: 301 EKMETLVVEPAREPSLTE 304

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BLAST of ClCG02G000010 vs. TrEMBL
Match: A0A0A0LMH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337790 PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 4.3e-110
Identity = 209/245 (85.31%), Postives = 224/245 (91.43%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSLS    SSS+        +S+FPASFSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSST--------VSYFPASFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDE+
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEV 237

Query: 243 VRTKY 248
           + + +
Sbjct: 241 IPSTF 237

[Close]

BLAST of ClCG02G000010 vs. TrEMBL
Match: B9SEK8_RICCO (Plastid-specific 30S ribosomal protein 1, chloroplast, putative OS=Ricinus communis GN=RCOM_0969810 PE=4 SV=1)

HSP 1 Score: 405.2 bits (1040), Expect = 7.3e-110
Identity = 220/321 (68.54%), Postives = 250/321 (77.88%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           M TL  S+Q      H+L   + S  +++SSS SSI     S  L   +    +LSS TS
Sbjct: 1   MTTLLGSLQTTF---HNLPRVSLSPKAATSSSCSSICIL-GSKKLRLPSF---SLSSKTS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
            F N  K    ++     R   ++  VRMSW+G LSSVKLI QGKNLELT+ VKKHVE+K
Sbjct: 61  -FLNPLKLGSNVKYFENKRGRRSA--VRMSWEGPLSSVKLITQGKNLELTDTVKKHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGP+IRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPKIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEE---VFQEDGGEVI 242
           DLVSSIIQRKLRKIKEK SDHGRHMKGF+RLKVREP    V D+ +E   V  ++  + I
Sbjct: 181 DLVSSIIQRKLRKIKEKVSDHGRHMKGFNRLKVREPVAEPVKDDTDEVDGVLGDEDEDYI 240

Query: 243 DEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKEN 302
           DE+VRTKYFDMPPLTV EAIEQLKN+DHDFYGFRNEETGEINI+YKRK GGYG+IIPKEN
Sbjct: 241 DEVVRTKYFDMPPLTVSEAIEQLKNVDHDFYGFRNEETGEINIIYKRKAGGYGIIIPKEN 300

Query: 303 GKAEKLEPVTVEAAREPSLAE 321
           GKAEKLEPV +E AREPS+AE
Sbjct: 301 GKAEKLEPVVIEPAREPSIAE 311

[Close]

BLAST of ClCG02G000010 vs. TrEMBL
Match: A0A0B0MSM5_GOSAR (30S ribosomal 1, chloroplastic OS=Gossypium arboreum GN=F383_30426 PE=4 SV=1)

HSP 1 Score: 401.7 bits (1031), Expect = 8.1e-109
Identity = 219/329 (66.57%), Postives = 249/329 (75.68%), Query Frame = 1


Query: 5   TLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTSAF 64
           TL +S Q +   HH LS S  SS SS SSSSSSIS F        +  ++ +L S  S+F
Sbjct: 4   TLLASSQTSF--HHPLSVS-DSSFSSPSSSSSSISMFT------LTKPRIPSLPSYKSSF 63

Query: 65  FNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVG 124
           FN   ++         +  ++S  VRMSWDG L+SVKLI+QGKNLELT+ VK+HVEEKVG
Sbjct: 64  FNPIGNYFKCVEMEPRKIRNSSLTVRMSWDGPLASVKLIIQGKNLELTDTVKQHVEEKVG 123

Query: 125 KAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDL 184
           KAVQKHSHLVREVDVRLSVRGGE GKGPRIRRCEVTLFTKKHGVVRAEEDAETVY SIDL
Sbjct: 124 KAVQKHSHLVREVDVRLSVRGGELGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYGSIDL 183

Query: 185 VSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDE-------------EVF 244
           VSSI+QRKLRKIKEK+SD GRHMKGF R KVREP  +VV D+ E              V 
Sbjct: 184 VSSILQRKLRKIKEKESDRGRHMKGFSRSKVREPVAVVVDDDAEAVPEQVVADDDVAAVP 243

Query: 245 QEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGY 304
           +++    IDEIVRTKYF+MPPLTV EA+EQL+N+DHDFYGFRNEETGEINILYKRK GGY
Sbjct: 244 EQEDDSFIDEIVRTKYFEMPPLTVSEAVEQLENVDHDFYGFRNEETGEINILYKRKAGGY 303

Query: 305 GLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           GLIIPK NGKAEKLEP+ VE+A+E S  E
Sbjct: 304 GLIIPKGNGKAEKLEPLVVESAKEHSYVE 323

[Close]

BLAST of ClCG02G000010 vs. TAIR10
Match: AT5G24490.1 (AT5G24490.1 30S ribosomal protein, putative)

HSP 1 Score: 362.5 bits (929), Expect = 2.8e-100
Identity = 184/248 (74.19%), Postives = 209/248 (84.27%), Query Frame = 1


Query: 79  RSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEKVGKAVQKHSHLVREVD 138
           R  +  +S  V+MSWDG L+SVKLI+QGKNLEL+E +K+HVEEKVGK+VQKHSHLVREVD
Sbjct: 61  RHSYCRSSLAVKMSWDGPLASVKLIIQGKNLELSEPIKQHVEEKVGKSVQKHSHLVREVD 120

Query: 139 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASIDLVSSIIQRKLRKIKE 198
           VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYA IDLVS+IIQRKLRKIKE
Sbjct: 121 VRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYACIDLVSTIIQRKLRKIKE 180

Query: 199 KDSDHGRHMKGFDRLKVREPA--PIVVGDEDEEVF----QEDGGEVIDEIVRTKYFDMPP 258
           KDSDHGRHMKGF+RLKVREP   P+V   ED        +E+  ++I EIVRTK F+MPP
Sbjct: 181 KDSDHGRHMKGFNRLKVREPVIEPVVEDVEDSTDSSVGEEEEEDDLIKEIVRTKTFEMPP 240

Query: 259 LTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKAEKLEPVTVEA 318
           LTV EA+EQL+ + HDFYGF+NEETGEINI+YKRK+GGYGLIIPK++GKAEK+EP+  E 
Sbjct: 241 LTVAEAVEQLELVSHDFYGFQNEETGEINIVYKRKEGGYGLIIPKKDGKAEKVEPLPTEQ 300

Query: 319 AREPSLAE 321
             E S AE
Sbjct: 301 LNEHSFAE 308

[Close]

BLAST of ClCG02G000010 vs. NCBI nr
Match: gi|449459188|ref|XP_004147328.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus])

HSP 1 Score: 557.0 bits (1434), Expect = 2.2e-155
Identity = 285/318 (89.62%), Postives = 297/318 (93.40%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSLS    SSS+        +S+FPASFSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSST--------VSYFPASFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVT+EA REPSLAE
Sbjct: 301 EKLEPVTIEATREPSLAE 310

[Close]

BLAST of ClCG02G000010 vs. NCBI nr
Match: gi|659121787|ref|XP_008460813.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo])

HSP 1 Score: 556.2 bits (1432), Expect = 3.7e-155
Identity = 285/318 (89.62%), Postives = 296/318 (93.08%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSL             SSS++S+FPA FSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLPPP--------HPSSSTVSYFPAPFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDGHLSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKG RIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGQRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDEI
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEI 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENG A
Sbjct: 241 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGTA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EKLEPVTVEAAREPSLAE
Sbjct: 301 EKLEPVTVEAAREPSLAE 310

[Close]

BLAST of ClCG02G000010 vs. NCBI nr
Match: gi|590674564|ref|XP_007039204.1| (Plastid-specific 30S ribosomal protein 1 [Theobroma cacao])

HSP 1 Score: 415.2 bits (1066), Expect = 1.0e-112
Identity = 231/332 (69.58%), Postives = 253/332 (76.20%), Query Frame = 1


Query: 1   MVMATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSN 60
           M  A L SS  +    HH +S S SSSS  SSS+SS   F P          ++ +L S 
Sbjct: 1   MATALLASSQTS---FHHPISVSVSSSSCHSSSASSVSLFTPTK-------PRIPSLPSY 60

Query: 61  TSAFFNSC-KSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHV 120
            S+F N    SF  IET  R      S  VRMSWDG LSSVKLI+QGKNLELT+ VK+HV
Sbjct: 61  KSSFLNPIGNSFKDIETEPRKSRVC-SLTVRMSWDGPLSSVKLIIQGKNLELTDTVKQHV 120

Query: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180
           EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY
Sbjct: 121 EEKVGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVY 180

Query: 181 ASIDLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEV--------- 240
            SIDLVSSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  ++V DE E V         
Sbjct: 181 GSIDLVSSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVAVLVEDEVEAVPEQEDDVEA 240

Query: 241 --FQEDGGEVIDEIVRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKD 300
              QED G +IDEIVRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINILYKRK 
Sbjct: 241 VPEQEDDG-LIDEIVRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINILYKRKA 300

Query: 301 GGYGLIIPKENGKAEKLEPVTVEAAREPSLAE 321
           GGYGLIIPK NGKAEKLEPV V++A++ S  E
Sbjct: 301 GGYGLIIPKGNGKAEKLEPVVVDSAKQHSFVE 320

[Close]

BLAST of ClCG02G000010 vs. NCBI nr
Match: gi|802542005|ref|XP_012080892.1| (PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Jatropha curcas])

HSP 1 Score: 407.1 bits (1045), Expect = 2.8e-110
Identity = 216/318 (67.92%), Postives = 249/318 (78.30%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATL  S+Q +   HH    S S SS +++++SSS  +  +S +L F +      SS+ +
Sbjct: 1   MATLLGSLQTSF--HHP---SVSLSSKAAATTSSSSIYVLSSKNLRFPSF-----SSHKT 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           +F N       IE     R    S  VRMSWDG LSSVKLI+QGKNLELT+ VK HVE+K
Sbjct: 61  SFLNPLSDVKCIEV----RRGRRSPTVRMSWDGPLSSVKLIIQGKNLELTDTVKNHVEDK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGE G+GPRIRRCEVTLFTKKHGV+RAEEDAET+YASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGELGRGPRIRRCEVTLFTKKHGVIRAEEDAETIYASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DL SSI+QRKLRKIKEK+SDHGRHMKGF+RLKVREP  +VV D+ +EV Q +  E IDE+
Sbjct: 181 DLASSILQRKLRKIKEKESDHGRHMKGFNRLKVREPVEVVVKDDADEVPQTEEVEYIDEV 240

Query: 243 VRTKYFDMPPLTVEEAIEQLKNIDHDFYGFRNEETGEINILYKRKDGGYGLIIPKENGKA 302
           VRTKYFDMPPLTV EAIEQL+N+DHDFYGFRNEETGEINI+YKRK GGYGLIIPK  G A
Sbjct: 241 VRTKYFDMPPLTVSEAIEQLENVDHDFYGFRNEETGEINIVYKRKAGGYGLIIPKGEGGA 300

Query: 303 EKLEPVTVEAAREPSLAE 321
           EK+E + VE AREPSL E
Sbjct: 301 EKMETLVVEPAREPSLTE 304

[Close]

BLAST of ClCG02G000010 vs. NCBI nr
Match: gi|700207115|gb|KGN62234.1| (hypothetical protein Csa_2G337790 [Cucumis sativus])

HSP 1 Score: 406.0 bits (1042), Expect = 6.2e-110
Identity = 209/245 (85.31%), Postives = 224/245 (91.43%), Query Frame = 1


Query: 3   MATLTSSMQANLLSHHSLSSSTSSSSSSSSSSSSSISFFPASFSLHFSALKVHALSSNTS 62
           MATLTSSMQANLLS HSLS    SSS+        +S+FPASFSLHFSALKVHALSSN S
Sbjct: 1   MATLTSSMQANLLSDHSLSPPFHSSST--------VSYFPASFSLHFSALKVHALSSNAS 60

Query: 63  AFFNSCKSFGTIETPSRSRHASNSFNVRMSWDGHLSSVKLIVQGKNLELTEAVKKHVEEK 122
           AFFNSCK+FGTIET SR+RHASNSF++RM+WDG LSSVKLIVQGKNLELTEAVKKHVEEK
Sbjct: 61  AFFNSCKNFGTIETASRNRHASNSFSIRMTWDGPLSSVKLIVQGKNLELTEAVKKHVEEK 120

Query: 123 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVYASI 182
           VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETV+ASI
Sbjct: 121 VGKAVQKHSHLVREVDVRLSVRGGEFGKGPRIRRCEVTLFTKKHGVVRAEEDAETVFASI 180

Query: 183 DLVSSIIQRKLRKIKEKDSDHGRHMKGFDRLKVREPAPIVVGDEDEEVFQEDGGEVIDEI 242
           DLVSSIIQRKLRKIKEKDSD GRH+KGFDR KVREPAPIVV DE+EEVFQEDGGEVIDE+
Sbjct: 181 DLVSSIIQRKLRKIKEKDSDRGRHVKGFDRSKVREPAPIVVEDEEEEVFQEDGGEVIDEV 237

Query: 243 VRTKY 248
           + + +
Sbjct: 241 IPSTF 237

The following BLAST results are available for this feature:

BLAST of ClCG02G000010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRSP1_SPIOL	1.8e-93	58.18	Ribosome-binding factor PSRP1, chloroplastic OS=Spinacia oleracea GN=PSRP1 PE=1 ...	[more]
HPF_SYNY3	2.2e-35	42.16	Ribosome hibernation promotion factor OS=Synechocystis sp. (strain PCC 6803 / Ka...	[more]
HPF_SYNP2	1.8e-32	39.70	Ribosome hibernation promotion factor OS=Synechococcus sp. (strain ATCC 27264 / ...	[more]

BLAST of ClCG02G000010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A061G1K9_THECC	7.1e-113	69.58	Plastid-specific 30S ribosomal protein 1 OS=Theobroma cacao GN=TCM_015512 PE=4 S...	[more]
A0A067LAT5_JATCU	1.9e-110	67.92	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17075 PE=4 SV=1	[more]
A0A0A0LMH1_CUCSA	4.3e-110	85.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G337790 PE=4 SV=1	[more]
B9SEK8_RICCO	7.3e-110	68.54	Plastid-specific 30S ribosomal protein 1, chloroplast, putative OS=Ricinus commu...	[more]
A0A0B0MSM5_GOSAR	8.1e-109	66.57	30S ribosomal 1, chloroplastic OS=Gossypium arboreum GN=F383_30426 PE=4 SV=1	[more]

BLAST of ClCG02G000010 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G24490.1	2.8e-100	74.19	30S ribosomal protein, putative	[more]

BLAST of ClCG02G000010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459188\|ref\|XP_004147328.1\|	2.2e-155	89.62	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis sativus]	[more]
gi\|659121787\|ref\|XP_008460813.1\|	3.7e-155	89.62	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Cucumis melo]	[more]
gi\|590674564\|ref\|XP_007039204.1\|	1.0e-112	69.58	Plastid-specific 30S ribosomal protein 1 [Theobroma cacao]	[more]
gi\|802542005\|ref\|XP_012080892.1\|	2.8e-110	67.92	PREDICTED: ribosome-binding factor PSRP1, chloroplastic [Jatropha curcas]	[more]
gi\|700207115\|gb\|KGN62234.1\|	6.2e-110	85.31	hypothetical protein Csa_2G337790 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003489	RHF/RaiA

Vocabulary: **Biological Process**
Term	Definition
GO:0044238	primary metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G000010.1	ClCG02G000010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	GENE3D	G3DSA:3.30.160.100		coord: 101..199 score: 1.1
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	PFAM	PF02482	Ribosomal_S30AE	coord: 103..199 score: 3.6
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	TIGRFAMs	TIGR00741	TIGR00741	coord: 101..204 score: 6.3
IPR003489	Ribosomal protein S30Ae/sigma 54 modulation protein	unknown	SSF69754	Ribosome binding protein Y (YfiA homologue)	coord: 101..206 score: 1.03
None	No IPR available	PANTHER	PTHR33231	FAMILY NOT NAMED	coord: 28..312 score: 1.1E
None	No IPR available	PANTHER	PTHR33231:SF1	30S RIBOSOMAL PROTEIN-RELATED	coord: 28..312 score: 1.1E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G000010	Csa2G337790	Cucumber (Chinese Long) v2	cuwcgB126
ClCG02G000010	MELO3C023190	Melon (DHL92) v3.5.1	mewcgB091
ClCG02G000010	Cla007861	Watermelon (97103) v1	wcgwmB206
ClCG02G000010	Cla97C02G026210	Watermelon (97103) v2	wcgwmbB138
ClCG02G000010	Bhi10G001402	Wax gourd	wcgwgoB303
ClCG02G000010	CSPI02G16450	Wild cucumber (PI 183967)	cpiwcgB133
ClCG02G000010	Cucsa.228170	Cucumber (Gy14) v1	cgywcgB401
ClCG02G000010	Lsi10G007960	Bottle gourd (USVL1VR-Ls)	lsiwcgB056
ClCG02G000010	CsGy2G016060	Cucumber (Gy14) v2	cgybwcgB116
ClCG02G000010	MELO3C023190.2	Melon (DHL92) v3.6.1	medwcgB089
ClCG02G000010	CsaV3_2G019690	Cucumber (Chinese Long) v3	cucwcgB139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G000010	Wild cucumber (PI 183967)	cpiwcgB126
ClCG02G000010	Cucumber (Chinese Long) v2	cuwcgB120