Lsi10G006770 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G006770
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionEncodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative
Locationchr10 : 9473939 .. 9475401 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATGCTTCCATGCAAACGCATCCTCCTCCTCCTCCTCCTCCTTCTCTGTTGTTTCTCAAACACGGCTATAGGTAGACTTTTCCATTTAACGACTTTTCTGTTTCTTTATTAACTTTATGTTTTAAGTTATGGTTAACCAACATGTTAAACTAATTGATTATGGTAAATCAAATCGGTTTTTGTTTATGTATTTCTTCTCTAGTTTTGTTTATGTATTCCTTTACTATTATCTGTCTTCGAGGTTTCAAAATATATATTGACATTTTAATGCAATTCTTGTTAACTTATGTAACGGTCATAAATAAGATGAGATCTTATTTACAATTTTCTCATGCATGATATCTAGAATTTTAAATTCTAACAAATAATATTTGCAAGTAAGCTAGATGCATATACTTTATTAATATTTGAGAAATTTTGGAAGATGTGTGACAAACATAGGTACATTCAAACATGACATATGTTTCTTGATGCTTGTTTTGCAAATTTAATGGGACTATGGAAGTATCATTTTATAAAACGGTATCTTTCTTCTTTTTTTTTTTAAAGAAAATGAAGTTTTTCTTAGAGTAAATTTACCTATTTTATAATCTACTTTCTAAAATCTTATTTCAAAAAGAAGGATTTCTATCCAGAAAATAAACCAAACAAAAAACCAGTTAAAATTAAACTTTAACGTTTTGTCTCCAACCCTATATGATTTTGACGGATTTCAAACAATTTCGTTGTTTGTTATTTAAAAGAAAGAGAATGATTTTTAAATATGAAGTGATTTCAAATCTTACTTTTATGTAAAAAAATCTGATTAAAATGGTCGGATTTGTAAGATTTCCTAGAATTTAGGGTAAACTAGTTAAGTTATTTAACCTTGTATAATGAAAAGCCTATTATCAGTAAACTTTCTATGGTTTCTTTTTCTTAAATAATCGATTGTCCTACAACCTTAAGTTAATGGGTGAAGACAATATTATATTATCTAATATATTTCTTTTTTCTGTTACCATTAAACTACAAAATTTTAAATACAATCCTCTCAAGTCTTTTTCAAATGAAGTAAGGAATTTAAAATTATTTTTTGGATTTTAAATCCATGATTTAAAATCATTTCTAGATCTTTCTTGAATCCAAAGGATGAGTAACTAAGGAAAACTATACTCAGAATTAAAAAATACAAAATACAAACTCATTCTATTGAAGTTTTTCTTCTCTTTGGAAATCAAAATTTTAATTATAAAGTTGGATTTAGAATATCACTGATGGGATTTTGCTATTGATTTGTGTTTTGCAGCAGCAAGAAGTTTGGGAGTGCCTCATCAGATTAAAAGTGATACTGATCATAATCAGAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

mRNA sequence

ATGGCTATGCTTCCATGCAAACGCATCCTCCTCCTCCTCCTCCTCCTTCTCTGTTGTTTCTCAAACACGGCTATAGCAGCAAGAAGTTTGGGAGTGCCTCATCAGATTAAAAGTGATACTGATCATAATCAGAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATCCTCCTCCTCCTCCTCCTCCTTCTCTGTTGTTTCTCAAACACGGCTATAGCAGCAAGAAGTTTGGGAGTGCCTCATCAGATTAAAAGTGATACTGATCATAATCAGAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Protein sequence

MAMLPCKRILLLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVINDDLKVHDEEHFSSTDDLGAMDYTPASKKPPIHN
Homology
[Close]
BLAST of Lsi10G006770 vs. TrEMBL
Match: A0A0A0LMV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.7e-19
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1  MAMLPCKRIL---LLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVIN---DDLKVH 60
          MAMLPCKRIL   +L+L+LLCCFSN AIAARS+GV  ++K+++  N+KVIN   D  KVH
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVA-EMKNESQ-NEKVINMNDDAYKVH 60

Query: 61 --DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
            DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]
BLAST of Lsi10G006770 vs. NCBI nr
Match: gi|700206983|gb|KGN62102.1| (hypothetical protein Csa_2G297260 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 8.2e-19
Identity = 64/90 (71.11%), Postives = 74/90 (82.22%), Query Frame = 1 

Query: 1  MAMLPCKRIL---LLLLLLLCCFSNTAIAARSLGVPHQIKSDTDHNQKVIN---DDLKVH 60
          MAMLPCKRIL   +L+L+LLCCFSN AIAARS+GV  ++K+++  N+KVIN   D  KVH
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVA-EMKNESQ-NEKVINMNDDAYKVH 60

Query: 61 --DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
            DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 88

The following BLAST results are available for this feature:
BLAST of Lsi10G006770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi10G006770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LMV6_CUCSA5.7e-1971.11Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297260 PE=4 SV=1[more]
BLAST of Lsi10G006770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi10G006770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700206983|gb|KGN62102.1|8.2e-1971.11hypothetical protein Csa_2G297260 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0008283 cell proliferation
biological_process GO:0040007 growth
biological_process GO:0007165 signal transduction
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008083 growth factor activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G006770.1Lsi10G006770.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33743FAMILY NOT NAMEDcoord: 2..81
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi10G006770Csa2G297260Cucumber (Chinese Long) v2culsiB093
Lsi10G006770CSPI02G15250Wild cucumber (PI 183967)cpilsiB091
Lsi10G006770CmaCh20G011040Cucurbita maxima (Rimu)cmalsiB508
Lsi10G006770CmoCh20G011340Cucurbita moschata (Rifu)cmolsiB492
Lsi10G006770MELO3C020970Melon (DHL92) v3.5.1lsimeB054
Lsi10G006770ClCG02G000910Watermelon (Charleston Gray)lsiwcgB056
Lsi10G006770MELO3C020970.2Melon (DHL92) v3.6.1lsimedB060
Lsi10G006770Cla97C02G027290Watermelon (97103) v2lsiwmbB053
Lsi10G006770Bhi10G001888Wax gourdlsiwgoB072
Lsi10G006770Cp4.1LG05g10970Cucurbita pepo (Zucchini)cpelsiB593
Lsi10G006770CsGy2G015240Cucumber (Gy14) v2cgyblsiB086
Lsi10G006770CsaV3_2G017800Cucumber (Chinese Long) v3cuclsiB106
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G006770Cucumber (Chinese Long) v3cuclsiB447
Lsi10G006770Watermelon (97103) v2lsiwmbB037
Lsi10G006770Wax gourdlsiwgoB091
Lsi10G006770Bottle gourd (USVL1VR-Ls)lsilsiB029
Lsi10G006770Cucumber (Gy14) v1cgylsiB409
Lsi10G006770Cucurbita maxima (Rimu)cmalsiB551
Lsi10G006770Cucurbita maxima (Rimu)cmalsiB592
Lsi10G006770Cucurbita moschata (Rifu)cmolsiB536
Lsi10G006770Cucurbita moschata (Rifu)cmolsiB577
Lsi10G006770Cucurbita pepo (Zucchini)cpelsiB222
Lsi10G006770Watermelon (97103) v1lsiwmB060
Lsi10G006770Watermelon (97103) v1lsiwmB066
Lsi10G006770Cucumber (Gy14) v2cgyblsiB385
Lsi10G006770Silver-seed gourdcarlsiB213
Lsi10G006770Silver-seed gourdcarlsiB967