ClCG02G000910 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G000910
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr02 : 1064031 .. 1065182 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGCTTCCATGCAAACGCATCGTCGTCTTCGTCCTCGTCCTCATCTTTCTTTGTTGTTTCTCAAACATGACTATAGGTAGACTTTTCGATCTAATGTCGTTTCTTTTTCTTCATTTTTATGTTTTAAGTTACGGCTAACCAACATATTAATTAACTGATTACGATAAATCAAATCGATTTTTGTTTATTTATTTCTTCTCCAATTATGTTTTTTTTTTTTTTTTTGGTTTAAAAATTAGGTTAAACTCTAACAAATAATATTAGCTAGTTGGATTATGATAAATAATTGGAATATGTTCTGTAATTTTTCTTTACCTTTATCTGACTTCGAGGTTTTAAAATATGTATTTTTATGCAATTCTTGTTTGCACAATCATATACATAAGATGGAAAATTTTTGTTTTTCTCATGTATAATATCTAGAATTTTAAACTCTAACAAATAATATTAGCAAGTAAGTTAGATGCATATAATTTATTATTTGAGAAATTTTGGAAGGTGTGTGCCAAACATAGATACATTAAAACATGACATATGTTTCTTGATGCTTGTTTTGCAAGTTTAATGGGACTATGGAAGTACCTCTTTTTTCAAAAGGATATATATTTCTTTTTTAACAAAATTAAGTTTGTTTAGAGTAAATTTACTTATTCTGTAATCTACTTTTTAAAATCTTATTTCAAAAAGAATGATTTCTAACTAGAAAGAAAACAAAACAAAAGCTAATAAGTACTCTAGTTTCGATAGAATCTTTTTTATTAAAATCATTTCTTGATCTTTCTTGAATCCAAATAGTGGGTTATTAACTTCAAGCAAAACCATACTCGAACGAGAAAAAACCCACAGAAACACTTAGAATAAGTTAAATTCTTTACCAAATCATAAAATGAACAATACAAACTCATTCTAATGAGAAGAAATTTTATGTACAATGTTTGATTTAGATCGTTGATGGGATTTTGCTCTTGATTGTGGTTTGCAGCTGCAAGAAATTTGGGAGTACCTCAGATTAAAAGTGATACTCATAATCAAAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

mRNA sequence

ATGGCTATGCTTCCATGCAAACGCATCGTCGTCTTCGTCCTCGTCCTCATCTTTCTTTGTTGTTTCTCAAACATGACTATAGCTGCAAGAAATTTGGGAGTACCTCAGATTAAAAGTGATACTCATAATCAAAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATCGTCGTCTTCGTCCTCGTCCTCATCTTTCTTTGTTGTTTCTCAAACATGACTATAGCTGCAAGAAATTTGGGAGTACCTCAGATTAAAAGTGATACTCATAATCAAAAAGTAATTAATGATGATCTTAAAGTTCATGATGAAGAACATTTCTCAAGCACTGATGATTTGGGTGCAATGGATTATACTCCAGCCTCCAAGAAGCCTCCAATTCACAACTAG

Protein sequence

MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFSSTDDLGAMDYTPASKKPPIHN

Homology

[Close]

BLAST of ClCG02G000910 vs. TrEMBL
Match: A0A0A0LMV6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.5e-24
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 1  MAMLPCKRIV-VFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVIN---DDLKVH-- 60
          MAMLPCKRI+ +FVL+L+ LCCFSN  IAAR++GV ++K+++ N+KVIN   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
          DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of ClCG02G000910 vs. TrEMBL
Match: A0A061DQW2_THECC (Encodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative OS=Theobroma cacao GN=TCM_001298 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 3.8e-07
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MA +PCK ++   LV +FL CF + T  ARN+ V +     H+ +V+       D     
Sbjct: 1  MARVPCKHLL---LVALFLFCFISTTAGARNMPVAKETQKVHDDQVLT---ATEDGAPKI 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
          + D+L +MDYTPA++KPPIHN
Sbjct: 61 NADELVSMDYTPATRKPPIHN 75

[Close]

BLAST of ClCG02G000910 vs. TrEMBL
Match: A0A0B2RNZ0_GLYSO (Root meristem growth factor 9 OS=Glycine soja GN=glysoja_030483 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MAM P KR++   LV   L CF  MT +AR+L   +IK D   +       K + E    
Sbjct: 1  MAMSPNKRLL---LVAFLLLCFITMTASARSLR--EIKDDAVKKSTQTSFFKPNHEGAED 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
          S D+L  MDYTPA + PPIHN
Sbjct: 61 SNDELDTMDYTPAKRNPPIHN 76

[Close]

BLAST of ClCG02G000910 vs. TrEMBL
Match: K7KR36_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G186300 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 1   MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
           MAM P KR++   LV   L CF  MT +AR+L   +IK D   +       K + E    
Sbjct: 34  MAMSPNKRLL---LVAFLLLCFITMTASARSLR--EIKDDAVKKSTQTSFFKPNHEGAED 93

Query: 61  STDDLGAMDYTPASKKPPIHN 82
           S D+L  MDYTPA + PPIHN
Sbjct: 94  SNDELDTMDYTPAKRNPPIHN 109

[Close]

BLAST of ClCG02G000910 vs. TrEMBL
Match: A0A0D2QNE0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_003G048600 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-06
Identity = 34/81 (41.98%), Postives = 47/81 (58.02%), Query Frame = 1


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MA +PCK ++   L   FL  F + T  ARNL V +     H+ + +    K H E + S
Sbjct: 1  MARVPCKHLI---LAAFFLFFFISTTATARNLPVAKETQKPHDHQELTST-KDHGEPNIS 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
            D+L +MDYTPA++KPPIHN
Sbjct: 61 -VDELVSMDYTPATRKPPIHN 76

[Close]

BLAST of ClCG02G000910 vs. NCBI nr
Match: gi|700206983|gb|KGN62102.1| (hypothetical protein Csa_2G297260 [Cucumis sativus])

HSP 1 Score: 118.2 bits (295), Expect = 6.5e-24
Identity = 62/88 (70.45%), Postives = 74/88 (84.09%), Query Frame = 1


Query: 1  MAMLPCKRIV-VFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVIN---DDLKVH-- 60
          MAMLPCKRI+ +FVL+L+ LCCFSN  IAAR++GV ++K+++ N+KVIN   D  KVH  
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEH-FSSTDDLGAMDYTPASKKPPIHN 82
          DEEH FSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of ClCG02G000910 vs. NCBI nr
Match: gi|502139953|ref|XP_004503987.1| (PREDICTED: uncharacterized protein LOC101506875 [Cicer arietinum])

HSP 1 Score: 65.1 bits (157), Expect = 6.5e-08
Identity = 32/71 (45.07%), Postives = 45/71 (63.38%), Query Frame = 1


Query: 12 FVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDL-KVHDEEHFSSTDDLGAMDY 71
          F+LV+ FL CF +    AR L      +DT N K + D++ K  +E+H +  DD+ +MDY
Sbjct: 9  FLLVVFFLLCFISFQARARTLKEKSKDTDTTNNKEVQDNMFKAKEEDHNNVGDDVFSMDY 68

Query: 72 TPASKKPPIHN 82
          TPA +KPPIHN
Sbjct: 69 TPARRKPPIHN 79

[Close]

BLAST of ClCG02G000910 vs. NCBI nr
Match: gi|590708114|ref|XP_007048186.1| (Encodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative [Theobroma cacao])

HSP 1 Score: 62.0 bits (149), Expect = 5.5e-07
Identity = 33/81 (40.74%), Postives = 48/81 (59.26%), Query Frame = 1


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MA +PCK ++   LV +FL CF + T  ARN+ V +     H+ +V+       D     
Sbjct: 1  MARVPCKHLL---LVALFLFCFISTTAGARNMPVAKETQKVHDDQVLT---ATEDGAPKI 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
          + D+L +MDYTPA++KPPIHN
Sbjct: 61 NADELVSMDYTPATRKPPIHN 75

[Close]

BLAST of ClCG02G000910 vs. NCBI nr
Match: gi|734406682|gb|KHN34029.1| (Root meristem growth factor 9 [Glycine soja])

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-06
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 1  MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
          MAM P KR++   LV   L CF  MT +AR+L   +IK D   +       K + E    
Sbjct: 1  MAMSPNKRLL---LVAFLLLCFITMTASARSLR--EIKDDAVKKSTQTSFFKPNHEGAED 60

Query: 61 STDDLGAMDYTPASKKPPIHN 82
          S D+L  MDYTPA + PPIHN
Sbjct: 61 SNDELDTMDYTPAKRNPPIHN 76

[Close]

BLAST of ClCG02G000910 vs. NCBI nr
Match: gi|947111173|gb|KRH59499.1| (hypothetical protein GLYMA_05G186300 [Glycine max])

HSP 1 Score: 58.5 bits (140), Expect = 6.1e-06
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 1


Query: 1   MAMLPCKRIVVFVLVLIFLCCFSNMTIAARNLGVPQIKSDTHNQKVINDDLKVHDEEHFS 60
           MAM P KR++   LV   L CF  MT +AR+L   +IK D   +       K + E    
Sbjct: 34  MAMSPNKRLL---LVAFLLLCFITMTASARSLR--EIKDDAVKKSTQTSFFKPNHEGAED 93

Query: 61  STDDLGAMDYTPASKKPPIHN 82
           S D+L  MDYTPA + PPIHN
Sbjct: 94  SNDELDTMDYTPAKRNPPIHN 109

The following BLAST results are available for this feature:

BLAST of ClCG02G000910 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMV6_CUCSA	4.5e-24	70.45	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G297260 PE=4 SV=1	[more]
A0A061DQW2_THECC	3.8e-07	40.74	Encodes a root meristem growth factor, Belongs to a family of functionally redun...	[more]
A0A0B2RNZ0_GLYSO	4.3e-06	43.21	Root meristem growth factor 9 OS=Glycine soja GN=glysoja_030483 PE=4 SV=1	[more]
K7KR36_SOYBN	4.3e-06	43.21	Uncharacterized protein OS=Glycine max GN=GLYMA_05G186300 PE=4 SV=1	[more]
A0A0D2QNE0_GOSRA	4.3e-06	41.98	Uncharacterized protein OS=Gossypium raimondii GN=B456_003G048600 PE=4 SV=1	[more]

BLAST of ClCG02G000910 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206983\|gb\|KGN62102.1\|	6.5e-24	70.45	hypothetical protein Csa_2G297260 [Cucumis sativus]	[more]
gi\|502139953\|ref\|XP_004503987.1\|	6.5e-08	45.07	PREDICTED: uncharacterized protein LOC101506875 [Cicer arietinum]	[more]
gi\|590708114\|ref\|XP_007048186.1\|	5.5e-07	40.74	Encodes a root meristem growth factor, Belongs to a family of functionally redun...	[more]
gi\|734406682\|gb\|KHN34029.1\|	6.1e-06	43.21	Root meristem growth factor 9 [Glycine soja]	[more]
gi\|947111173\|gb\|KRH59499.1\|	6.1e-06	43.21	hypothetical protein GLYMA_05G186300 [Glycine max]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0048527	lateral root development
biological_process	GO:0009958	positive gravitropism
biological_process	GO:0008284	positive regulation of cell proliferation
biological_process	GO:2000012	regulation of auxin polar transport
biological_process	GO:0032880	regulation of protein localization
biological_process	GO:0022622	root system development
biological_process	GO:0008283	cell proliferation
biological_process	GO:0040007	growth
biological_process	GO:0007165	signal transduction
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005615	extracellular space
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0008083	growth factor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G000910.1	ClCG02G000910.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 14..81 score: 2.3
None	No IPR available	PANTHER	PTHR33743:SF3	ROOT MERISTEM GROWTH FACTOR 9	coord: 14..81 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G000910	Csa2G297260	Cucumber (Chinese Long) v2	cuwcgB124
ClCG02G000910	MELO3C020970	Melon (DHL92) v3.5.1	mewcgB094
ClCG02G000910	Cla97C02G027290	Watermelon (97103) v2	wcgwmbB138
ClCG02G000910	Bhi10G001888	Wax gourd	wcgwgoB306
ClCG02G000910	CSPI02G15250	Wild cucumber (PI 183967)	cpiwcgB130
ClCG02G000910	CmaCh20G011040	Cucurbita maxima (Rimu)	cmawcgB482
ClCG02G000910	CmoCh20G011340	Cucurbita moschata (Rifu)	cmowcgB480
ClCG02G000910	Lsi10G006770	Bottle gourd (USVL1VR-Ls)	lsiwcgB056
ClCG02G000910	Cp4.1LG05g10970	Cucurbita pepo (Zucchini)	cpewcgB647
ClCG02G000910	CsGy2G015240	Cucumber (Gy14) v2	cgybwcgB121
ClCG02G000910	MELO3C020970.2	Melon (DHL92) v3.6.1	medwcgB092
ClCG02G000910	CsaV3_2G017800	Cucumber (Chinese Long) v3	cucwcgB139

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G000910	Cucumber (Gy14) v2	cgybwcgB411
ClCG02G000910	Silver-seed gourd	carwcgB0785
ClCG02G000910	Silver-seed gourd	carwcgB1028
ClCG02G000910	Cucumber (Chinese Long) v3	cucwcgB467
ClCG02G000910	Watermelon (97103) v2	wcgwmbB130
ClCG02G000910	Wax gourd	wcgwgoB309
ClCG02G000910	Watermelon (Charleston Gray)	wcgwcgB087
ClCG02G000910	Cucumber (Gy14) v1	cgywcgB135
ClCG02G000910	Cucumber (Gy14) v1	cgywcgB440
ClCG02G000910	Cucurbita maxima (Rimu)	cmawcgB534
ClCG02G000910	Cucurbita maxima (Rimu)	cmawcgB581
ClCG02G000910	Cucurbita moschata (Rifu)	cmowcgB531
ClCG02G000910	Cucurbita moschata (Rifu)	cmowcgB579
ClCG02G000910	Wild cucumber (PI 183967)	cpiwcgB468
ClCG02G000910	Cucumber (Chinese Long) v2	cuwcgB447
ClCG02G000910	Watermelon (97103) v1	wcgwmB193
ClCG02G000910	Watermelon (97103) v1	wcgwmB206
ClCG02G000910	Cucurbita pepo (Zucchini)	cpewcgB066
ClCG02G000910	Cucurbita pepo (Zucchini)	cpewcgB268
ClCG02G000910	Cucurbita pepo (Zucchini)	cpewcgB664