Lsi10G005980 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G005980
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA binding;DNA binding;sequence-specific DNA binding transcription factors
Location	chr10 : 8610032 .. 8614474 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATTTTGAGAAGCCTAAAAAATGGGAAGAGAAGTAGAGGGAAAATGAAATACCTACCTTTGATGTAAAGGACAAAATGTATTACAATAGTTAATGGATGAGAGAGTAAGTGAAATTTGAAGATTGGGGATATAATGTTTAGAGATGGAAGTTGTATCAAGTGATTCTTATATGCTTTATGTTTGTGGTTTATTACTATGTTAATGAATGGTTATTGAAAATGTTAGGTTAATTGGTATCGAACATTTATTATTAATTTTGAGATTAGATGTTCGATTCCCCAACTCATATATATATATATATTAGGTTCACATTTTCTACCTACATGTAGCTAGATATTGGAGGTTTGGTCAAGAATGTAACTTTCGTTGTTGCATTGTCTATGCTATGTTGTAAATGGAGTTAAGTGCTAAGCTAAGAGAGATTGGACAATACATTTCATTATACTTCTTGACTCTATTGTTCAGCTTAAGTTTAACATAATAATCTGGAGTTGAATGCGACAGATCATTGATATATAATTTAACCACATTGTTTCTCTATAGAATCGGATCGATGAAAAAGAAGTTGGGATTGAAGCATCACTACAATTAAGCACTATTGTGTTTCCCTTCTTGTGTGCTGAATTGAATTGAGACCAACCTCATTAATTATTATACCAAATAAAATTAATTACGCCATGAAAAATAATCGAATGGGTCTTAAATGTTCTATCTCAAGAAGAGAATGATGGTGATAAAATAAGGTAGAGTAGTGTTGTACAAAGAGAGTTATAATGAAGAAAGAGAAGAAGAAAAAGGGGAAATGGAATCGGAGAAGACGAAGGAGAAAGAGAAAAGAAACAAGGAAAAATAATATAAGAACAAAATATGAAGATTTGTTATGATGAAAATTAAGTGAACAGTACAAGGTGAAGTAAATGAAGAGAGAGGGAGGTTTTTTTTTCAAAAGAGTATTCACATCTCAAAATAAAAATTTGAAAAAAAATATTAATTTATACCTCAAAATTTTAGGAGTTGTATCAATTTGAAACCCTAAACTAATAATTGTATCGATTTAAATTCTAAATTTTTGTGAGTGTATCAATTTGCACCCTCCATTACGTTCCGTATGAAGTAAAACTTATAATTGTATCAATTAAACTTCTAAGCTTTCATAAATAAATCAGTTTAGACTCTTATTCATTTTCTCTTAGAATCGTCTATACATTACTTTAATTGTTCATTTTGTATAACCGATATTTGAAGAAGTTTACATACTTTTGAAAATTAATGTGTCGATGATTTTCAAAGATAATTATAATAAAGGGTCTAAATTGATTGGCTTATGAAAATTTAGGAGTTTAATTGACTCAAATTATAAGTTTCACACGATATTTGATCGAATGAAGTCTGGAAGAGGGTGTAAACACTGCTACACTTATGAAAGTTTTGAGTTTAAATTAATATAATTATTAATTTATAGTTTAAATTAATACAACCTCAAAATTTAGGGGCATAAATTTATATTTGCCATAAAAAAATATAAGTTGGAATTTAAATAGTTAAATAATATAAGAAGTTTGGAATTGGAATTTAAAGTCATTAATAACCTATTCAATCTCCTTCTAATCAACATTTAATAAACAAGATTTTATCAATCTCTTCAGCACTTCACCCAATTTCTCAATATCCCCACAAATTGACAGACCAACAGTTCATTAAACACTCTATTAAAATAAACCAACACAAAGGTAGAGATTAGTATAATTGCATGAACCACCATTTTTAACGTTCAATTTTTAGTCATAGAAGAAAACTGTTGAAATTTCTTCAACAAGATGAGAGCCGATCCCCGTTATGGCTTCTTCCTCCCATCACCGGCCAAACGACGTCGTTAAACGACCCCGTAAAGCGTCGGACAATCCCCATTTCTTTAAGGTTGTTCTTGCTCATGCTCTCAAGGAACAAAAACTTGTAAGCAAACTTATACTATATATATCTATGTCTCTTGTTATTTGGCTTCTCTCTCTCTCTCTTTCCATTTTATTTTAATTAATTCTAAAATATTGTTTTTCTTTTATTGTTTATGTTTAGGAAATCCCAAGAAAGTTTGTGAGAGAATATGGGGTAAAAGCTTTGTTAAATGACCAAATATGTGTGAAGGTGGGTGATGGGAAAGAGTGGAATTTGGGTTTGACAAAAAGTAATAATGGAAAAAGAGTGTGGTTTCATAATGGTTGGCAAAAGTTTATAGAGTATTATTCTGTTAAATTGGGTTACTTTCTTGTGTTTAAATATGAAAATCAATCTTCGAGTTTCTATGTCGTCATCTTTGATCTTACCGCCATGGAAATCGAGTATCCGATAAAGAAAATTCGTCTTAATGAAGCTGAGAAGGTGAAAATGGAGACATATCTTGATGATCCTCTTGATCTAGGTATGTTTCTTAGCCTAAGGGTTGATGTTGAATGTAAAATGTCTACTCTATTATTACTATTTAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAGTCTCATTTTAGTATTGGACTCTAGAGATTTTTTCATTTTAATTTTTGAACTTTTAAAATATCAATTTTAAATTAGAAAAAAAATATCAAAAAACAATTAGGGTTATTACTAATTTTTTATATTTTATTTTTCAAAAAACGACCATTTCGATCATTGTTACTTTTTAACACATATGCATGTAATTAAGTGGTTAATACAAATACCGAATTTGAATTATTTAGGCGTAGACCCTATATGGTAACCATTAATTTCGATTTTAATTTTCAAATTTTGAAACTTATTGCATGTTTTCTTCCAATATTTTGTCATAGTTTTCACTTTTAGTAAGAAAATATTTGAATTTTTAGTCAATTTTTTTTTTTAAAAAAAAATTTAAATCTTTGTTTTAGAATATTAGTAGAATGTAGACCCTACACAGAAATTTAGAAGTGGGAGTAGAGAGTTAGAAGTGGAAGTAGAGAGGTAGGCTTAACTTCATAACATCAAAATAATAATAATTAAAAAAAAAAAAACCAAAAGATTATCAAAGAGCACCTTATTATCTCACTTTTATTAATAGATTTCAAAGTTGGCAAAATTAGCTTGCGTGCCAGAAAACCGATGAACTTCGGGCAGAAGCCGCCGTCGACAGCGAGCCAACGAGCAAGGGCGATGGCAAAAGCTACCGCTTTTCAATCCATGACTTCGAATCCTTCTTTCATCTGCAAGATTTGGCCTTCACACATTCATCTTGGAAAATGTCTTGTAAGAATATTTAACTTCATTTTTTCTGCAATAAAAACATAGTATTTATATTAATTTTGACTCACTTTTGAAAAAATATATTCTTGCTTCAAGCACATTTTCCAGGATCTTTATTTATGAATATTGTTTTTTCCCCTAAACGTATTAGAAATATATGGTTGTTTTGACATATTTCTAATAAGTTTTAGAAAAATAATATTAATAAAAAAATCTCATTTTTCATAGTCACTTTTAATTATCTAGCATATCTTCGATTATGTGCATTAAAATATTATTTTTGATCCTACACTTTAAGTTTTATGTTATTTTAATTTTTATATACTCTCAATTACTATTAGTCTTGAGACATGATCAGGGTGCTACGGAGGTGTCAACTTAGTTGAGATGTCCTAGTACACCACCTGATTCCTATTTCCTTTGGTATCTTGTTAAAAAAAAAATAGTCAAAGTAATTTCTATAAATCTTAAATTTAGTCTAAAGTTTATTTTTAATTCTTAGTTTTCTTTTTTCAAAAAAATCAAAAATAAAAACTTAGGGAAATTACTATAAACATAAAAAATATCAAATTATTTACAAATATAGAAATTTCCACTATCTATCAGTGATAAACCACGATAGAAGTCTGTAATTCTATCGTAGGAGCGACAGACTTCTATTGCTGTCTATCGCTATCTATCGCTCAAGCGATAAAATTCTATCGCGGTCTATCGCTGATAGATAGTAATTTTTCTTTTATATTTCTAAATAGTTTGACTCATTTTTCTATATTTGAAAACAACTCATAAACTTAACGTTTATAGAGATATACTATAATTAGACATTTAAAAAAATATAGGGTACAAATTCCAAAATGAAATGACTTTTTTTTTTTTTTTTTGGGGGTGTGTGTGAAAATTAAAGAATGTACCAAGAAGTTTTGCTGAGATGCATATAGAAGAGCCCACAGAGATCATTCTCCAAGTTTCTGATGGAAGAATGTGGAGCGCTGGTTGTGGCTTTTATTGGACTTCTACAATGAAAAGGATGACGGACTTTAGATATGGTTGGAAGAATTTTGTACGACAAAATAACTTGAAAGTAGGCGATTTCTGTGTCTTTGAAATGATCAGAAAAAACAGTAGAAGAATCTGTTTCAAAGTTGAAGTTTTTCGAGCTTCTTGA

mRNA sequence

ATGGAGCCGATCCCCGTTATGGCTTCTTCCTCCCATCACCGGCCAAACGACGTCGTTAAACGACCCCGTAAAGCGTCGGACAATCCCCATTTCTTTAAGGTTGTTCTTGCTCATGCTCTCAAGGAACAAAAACTTGAAATCCCAAGAAAGTTTGTGAGAGAATATGGGGTAAAAGCTTTGTTAAATGACCAAATATGTGTGAAGGTGGGTGATGGGAAAGAGTGGAATTTGGGTTTGACAAAAAGTAATAATGGAAAAAGAGTGTGGTTTCATAATGGTTGGCAAAAGTTTATAGAGTATTATTCTGTTAAATTGGGTTACTTTCTTGTGTTTAAATATGAAAATCAATCTTCGAGTTTCTATGTCGTCATCTTTGATCTTACCGCCATGGAAATCGAGTATCCGATAAAGAAAATTCGTCTTAATGAAGCTGAGAAGGTGAAAATGGAGACATATCTTGATGATCCTCTTGATCTAGATTTCAAAGTTGGCAAAATTAGCTTGCGTGCCAGAAAACCGATGAACTTCGGGCAGAAGCCGCCGTCGACAGCGAGCCAACGAGCAAGGGCGATGGCAAAAGCTACCGCTTTTCAATCCATGACTTCGAATCCTTCTTTCATCTGCAAGATTTGGCCTTCACACATTCATCTTGGAAAATGTCTTAATGTACCAAGAAGTTTTGCTGAGATGCATATAGAAGAGCCCACAGAGATCATTCTCCAAGTTTCTGATGGAAGAATGTGGAGCGCTGGTTGTGGCTTTTATTGGACTTCTACAATGAAAAGGATGACGGACTTTAGATATGGTTGGAAGAATTTTGTACGACAAAATAACTTGAAAGTAGGCGATTTCTGTGTCTTTGAAATGATCAGAAAAAACAGTAGAAGAATCTGTTTCAAAGTTGAAGTTTTTCGAGCTTCTTGA

Coding sequence (CDS)

ATGGAGCCGATCCCCGTTATGGCTTCTTCCTCCCATCACCGGCCAAACGACGTCGTTAAACGACCCCGTAAAGCGTCGGACAATCCCCATTTCTTTAAGGTTGTTCTTGCTCATGCTCTCAAGGAACAAAAACTTGAAATCCCAAGAAAGTTTGTGAGAGAATATGGGGTAAAAGCTTTGTTAAATGACCAAATATGTGTGAAGGTGGGTGATGGGAAAGAGTGGAATTTGGGTTTGACAAAAAGTAATAATGGAAAAAGAGTGTGGTTTCATAATGGTTGGCAAAAGTTTATAGAGTATTATTCTGTTAAATTGGGTTACTTTCTTGTGTTTAAATATGAAAATCAATCTTCGAGTTTCTATGTCGTCATCTTTGATCTTACCGCCATGGAAATCGAGTATCCGATAAAGAAAATTCGTCTTAATGAAGCTGAGAAGGTGAAAATGGAGACATATCTTGATGATCCTCTTGATCTAGATTTCAAAGTTGGCAAAATTAGCTTGCGTGCCAGAAAACCGATGAACTTCGGGCAGAAGCCGCCGTCGACAGCGAGCCAACGAGCAAGGGCGATGGCAAAAGCTACCGCTTTTCAATCCATGACTTCGAATCCTTCTTTCATCTGCAAGATTTGGCCTTCACACATTCATCTTGGAAAATGTCTTAATGTACCAAGAAGTTTTGCTGAGATGCATATAGAAGAGCCCACAGAGATCATTCTCCAAGTTTCTGATGGAAGAATGTGGAGCGCTGGTTGTGGCTTTTATTGGACTTCTACAATGAAAAGGATGACGGACTTTAGATATGGTTGGAAGAATTTTGTACGACAAAATAACTTGAAAGTAGGCGATTTCTGTGTCTTTGAAATGATCAGAAAAAACAGTAGAAGAATCTGTTTCAAAGTTGAAGTTTTTCGAGCTTCTTGA

Protein sequence

MEPIPVMASSSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEAEKVKMETYLDDPLDLDFKVGKISLRARKPMNFGQKPPSTASQRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCLNVPRSFAEMHIEEPTEIILQVSDGRMWSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVGDFCVFEMIRKNSRRICFKVEVFRAS

Homology

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BLAST of Lsi10G005980 vs. Swiss-Prot
Match: VRN1_ARATH (B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 5.9e-17
Identity = 47/135 (34.81%), Postives = 82/135 (60.74%), Query Frame = 1


Query: 29  PHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRV 88
           P F K++ +  ++E++L +P KFV ++  K  L+  + + V DG  W +GL K++N  ++
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKF--KDELSVAVALTVPDGHVWRVGLRKADN--KI 63

Query: 89  WFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEAEKVK 148
           WF +GWQ+F++ YS+++GY L+F+YE  +S+F V IF+L+  EI Y    +  +     K
Sbjct: 64  WFQDGWQEFVDRYSIRIGYLLIFRYEG-NSAFSVYIFNLSHSEINYHSTGLMDSAHNHFK 123

Query: 149 METYLDDPLDLDFKV 164
                +D  D D +V
Sbjct: 124 RARLFEDLEDEDAEV 133

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BLAST of Lsi10G005980 vs. Swiss-Prot
Match: Y3896_ARATH (B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-14
Identity = 49/156 (31.41%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 7   MASSSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQIC 66
           + S SH R     + P K      FFK+VL   +K++ ++IP +FV+  G K  L++ + 
Sbjct: 11  VTSVSHRRSQQDPESPVKK-----FFKLVLPSTMKDKMMKIPPRFVKLQGSK--LSEVVT 70

Query: 67  VKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFD 126
           ++   G + ++ L +   G+ +WFH GW +F E +S++ G+FL+F+Y+ ++SSF V+IF+
Sbjct: 71  LETPAGFKRSIKLKRI--GEEIWFHEGWSEFAEAHSIEEGHFLLFEYK-ENSSFRVIIFN 130

Query: 127 LTAMEIEYPIKKIRLNEAEKVKMETYLDDPLDLDFK 163
           ++A E +YP+  + + +++        DD +D+  K
Sbjct: 131 VSACETKYPLDAVHIIDSD--------DDIIDITGK 148

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BLAST of Lsi10G005980 vs. Swiss-Prot
Match: Y3123_ORYSJ (B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica GN=Os03g0212300 PE=2 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-13
Identity = 70/269 (26.02%), Postives = 114/269 (42.38%), Query Frame = 1


Query: 31  FFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRVWF 90
           FF+++L  + K  KL++P KF RE G + L   ++ V     + W++ +   +    V+ 
Sbjct: 15  FFRIILPGSSKT-KLKLPYKFARELGDRELREARLRVAGEGRRPWDVKVFDDDVSGDVYL 74

Query: 91  HNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEAEKVKME 150
             GWQ+F   + ++ G+FLVF+Y+  +++F V +FD T    +Y     R ++A +    
Sbjct: 75  GRGWQEFARAHDLRDGHFLVFRYDG-AAAFTVTVFDETMCRRDYR----RHHDAAE---- 134

Query: 151 TYLDDPLDLDFKVGKISLRARKPMNFGQKPPSTASQRARAMAKATA-FQSMTSNPSFICK 210
                                     G    S +S  A A+A A A      +   F   
Sbjct: 135 -------------------------SGSSSSSDSSDAAAAVATAAAEGVGDVALSQFAVT 194

Query: 211 IWPSHIH--LGKCLNVPRSFAEMHIEEPTEIILQVSDGRMWSAGCGFYWTSTMKRMTDFR 270
           +   ++     + LNVP  F E H     E ++    G  W+           +R T FR
Sbjct: 195 LRQCNLEDKQAQYLNVPMEFQEAHEYARREKVVLRMRGEAWTVRLKHSRRERGQR-TAFR 247

Query: 271 YGWKNFVRQNNLKVGDFCVFEMIRKNSRR 297
           YGW  F   N L VGD C F ++R+   R
Sbjct: 255 YGWHRFCVDNGLAVGDTCFFRVLREGDLR 247

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BLAST of Lsi10G005980 vs. Swiss-Prot
Match: Y4158_ARATH (B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.1e-13
Identity = 44/137 (32.12%), Postives = 82/137 (59.85%), Query Frame = 1


Query: 9   SSSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVK 68
           S SH +     + P K      FFK+VL   +K++ + IP +FV+  G K  L++ + + 
Sbjct: 13  SVSHRQSQQDPESPVKK-----FFKLVLPSTMKDKMMRIPPRFVKLQGSK--LSEVVTLV 72

Query: 69  VGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLT 128
              G + ++ L +   G+ +WFH GW +F E +S++ G+FL+F+Y+ ++SSF V+IF+ +
Sbjct: 73  TPAGYKRSIKLKRI--GEEIWFHEGWSEFAEAHSIEEGHFLLFEYK-KNSSFRVIIFNAS 132

Query: 129 AMEIEYPIKKIRLNEAE 146
           A E  YP+  + + +++
Sbjct: 133 ACETNYPLDAVHIIDSD 139

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BLAST of Lsi10G005980 vs. Swiss-Prot
Match: Y1475_ARATH (B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 9.7e-12
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 3   PIPVMASSSHHR----PNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVK 62
           P P+ ++++  R    P   VK+         F K++L   + E+ +++P +FVR +G K
Sbjct: 11  PGPITSAATQRRLKPEPEPTVKK---------FIKIILLSRIIEKMMKVPARFVR-FGPK 70

Query: 63  ALLNDQICVKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSS 122
             L D + ++   G + ++ + +   G  VWF  GW +F E +S+  G+FL F YE  S 
Sbjct: 71  --LTDNVTLQTPVGFKRSIRIKRI--GDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSC 130

Query: 123 SFYVVIFDLTAMEIEYPIKKIRLNEAE 146
            F VVIFD++A EIEYP+     N  E
Sbjct: 131 -FRVVIFDVSASEIEYPLDDTDDNREE 142

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BLAST of Lsi10G005980 vs. TrEMBL
Match: A0A0A0LJV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292240 PE=4 SV=1)

HSP 1 Score: 380.9 bits (977), Expect = 1.4e-102
Identity = 186/265 (70.19%), Postives = 216/265 (81.51%), Query Frame = 1


Query: 46  EIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKL 105
           EIPRKFVREYG+KALL DQIC+KV DGKEWN+GLTKSNNG RVW H GW+K + +YSVK 
Sbjct: 3   EIPRKFVREYGLKALLKDQICLKVRDGKEWNVGLTKSNNGTRVWLHYGWEKLVGFYSVKS 62

Query: 106 GYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEA-EKVKMETYLDDP-LDLDFKV 165
           GYFLVFKYEN S SFYVVIFD TA EIEYP+KK RL++A EKVKMETY DD  LDLDFK 
Sbjct: 63  GYFLVFKYENPSPSFYVVIFDHTATEIEYPVKKTRLDKAKEKVKMETYFDDDCLDLDFKD 122

Query: 166 GKISLRARKPMNFGQKPPSTASQRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCLNV 225
           G +S   +KP N   +PPST SQ+ARAMA+A  FQSMT NPSFICKIWPSHIH  K L++
Sbjct: 123 GDLSSGVKKPTNSRWRPPSTGSQQARAMAEANRFQSMTLNPSFICKIWPSHIHRTKSLSI 182

Query: 226 PRSFAEMHIEEP-TEIILQVSDGRMWSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVG 285
           P++FA+M++E+  T+IIL+ SDGRMWS  CGFYWT  M+RMT ++YGWK+F+R NNL VG
Sbjct: 183 PKNFADMNLEDSITKIILKASDGRMWSGECGFYWTPKMQRMTFYKYGWKSFIRDNNLAVG 242

Query: 286 DFCVFEMIRKNSRRICFKVEVFRAS 308
           DFCVFEM  KNS  + FKVE FRAS
Sbjct: 243 DFCVFEMTGKNSTTVAFKVESFRAS 267

[Close]

BLAST of Lsi10G005980 vs. TrEMBL
Match: A0A059B061_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01965 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.8e-36
Identity = 107/285 (37.54%), Postives = 161/285 (56.49%), Query Frame = 1


Query: 26  SDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNG 85
           S  PHFFK+VL+ AL+  +L IP+KFVR+YG  + L+D + + +  G  W + L + N+G
Sbjct: 9   SQTPHFFKIVLSDALQNGRLGIPKKFVRKYG--SSLSDLVFLHLASGDVWEVELLRGNDG 68

Query: 86  KRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEAE 145
              +   GW  F+++Y+++ G+FLVF+YE   S+F VVIFD +A EI+YP+    ++E +
Sbjct: 69  --AFLRRGWPDFVKHYAIEHGHFLVFRYEG-GSAFRVVIFDKSATEIKYPL----VSEND 128

Query: 146 KVKMETYLDDPLDLDFKVGKISLRARKPMNFGQKPPSTASQRARAMAKATAFQSMTSNPS 205
             +ME            VG  S+   +  +         S+++ A+ +AT+FQS   NP 
Sbjct: 129 DPRMEE----------DVGDASVEVFEDHS------DQVSEKSEALERATSFQS--PNPF 188

Query: 206 FICKIWPSHIHLGKCLNVPRSFAEMHI---EEPTEIILQVSDGRMWSAGCGFYWTSTMKR 265
           F+  + PS I    CL+ P  F   +I       +IIL VSD R WS    F      +R
Sbjct: 189 FLAIMQPSFIR--HCLSAPARFFMKYIPNFRSKGDIILYVSDERFWSVRYKF-GIYGRRR 248

Query: 266 MTDFRYGWKNFVRQNNLKVGDFCVFEMIRKNSRRICFKVEVFRAS 308
              F  GWK FV+ NNLK+GD CVFE++ K   +I F+V +FRA+
Sbjct: 249 QIKFNCGWKRFVQDNNLKLGDVCVFEIMWK-VHQISFRVLIFRAN 262

[Close]

BLAST of Lsi10G005980 vs. TrEMBL
Match: A0A067LKV0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01474 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 105/323 (32.51%), Postives = 176/323 (54.49%), Query Frame = 1


Query: 26  SDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNG 85
           +D PHFFK++L  ++++ KL IP+KF R+YG    L     ++V  GK+W++ L KS++ 
Sbjct: 16  ADKPHFFKIILEDSVRDGKLSIPKKFARKYGDN--LPSSTVLEVPSGKKWSIELIKSDD- 75

Query: 86  KRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPI----KKIRL 145
             +WF NGWQ+F ++Y++  GY LVF+Y+ ++S F V+I D +A EI+YP     K++++
Sbjct: 76  -EIWFKNGWQEFADFYALATGYMLVFQYDKKNSHFNVIILDKSASEIDYPYNNPEKELQV 135

Query: 146 NEAEKVKMETYLDDPLDLDFKVG-KISLRARKPMNFGQKPP------STASQRA------ 205
            ++E+   ET++D   ++ + +      R + P++F Q         ST++ +A      
Sbjct: 136 PKSEE---ETHIDVSAEILYDLSTSQKTRKKSPLSFSQPSKKMKVHHSTSNDKAEKRNAG 195

Query: 206 ------------------RAMAKATAFQS-----MTSNPSFICKIWPSHIHLGKCLNVPR 265
                             RA  KA   Q       + NP FI  + P+  +LG  L VP 
Sbjct: 196 LFIGPQREDGVMARKQPLRAEEKANVLQKAKINFKSENPYFIVAVQPT--YLGNRLAVPS 255

Query: 266 SFAEMHIEEPTEI-ILQVSDGRMWSAG-CGFYWTS-TMKRMTDFRYGWKNFVRQNNLKVG 306
           +FA+ + ++   +  L  SDG+ WSA  C   W    + R+ +   GW+ FV++N+L+VG
Sbjct: 256 TFAKKYFKQERGVATLSTSDGKNWSAEYCNLAWNGIPLARLCN---GWRKFVKENHLEVG 315

[Close]

BLAST of Lsi10G005980 vs. TrEMBL
Match: G7J3B6_MEDTR (Plant-specific B3-DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g098790 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.3e-33
Identity = 102/298 (34.23%), Postives = 155/298 (52.01%), Query Frame = 1


Query: 30  HFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRVW 89
           HFFK++L   L   KL +PRKFV +YG    L   ICVK  +G  W L L KS+   ++W
Sbjct: 12  HFFKIILTQNLHHGKLMMPRKFVEKYG--ECLPKTICVKTPNGVNWKLNLVKSDG--KIW 71

Query: 90  FHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKI---RLNEAEK 149
           F  GW++F EY+S+  G+ L+FKYE ++S F+V IFD +A+EI YP+ ++   R+   + 
Sbjct: 72  FQKGWKEFAEYHSLAHGHLLLFKYE-RTSLFHVHIFDKSALEINYPLTRVEDKRVFNCQG 131

Query: 150 VKMETYLD------DPLDLDFKVGKIS-LRARKPMNFGQ---------KPPSTASQRARA 209
            K     D         +  F++G  S +  RK               KP    + +   
Sbjct: 132 KKPSNNEDCRASQKRKTNSSFEIGSSSCVNVRKFQKAAVHHIDRKGKGKPVIVDADKVTT 191

Query: 210 MAKATAFQSMTSNPSFICKIWPSHIHLGKCLNVPRSFAEMHIE---EPTEIILQVSDGRM 269
           + +A +F+  T NPSF+  +  S++     L +P  F + H +   +  +I  Q+S+GR+
Sbjct: 192 LERAKSFK--TCNPSFVVVMGASYVEHHFLLTIPSMFGKRHFDLNKKRGDIHFQLSNGRV 251

Query: 270 WSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVGDFCVFEMIRKNSRRICFKVEVFR 306
           W A      + T  R  +   GWK F + NNLKVGD C FE+I   S  + F+V +FR
Sbjct: 252 WPAKYRIRMSHTGLRF-ELSSGWKTFAKDNNLKVGDACNFELIL--STNMTFQVHIFR 299

[Close]

BLAST of Lsi10G005980 vs. TrEMBL
Match: A0A067LCJ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01468 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.9e-33
Identity = 95/275 (34.55%), Postives = 148/275 (53.82%), Query Frame = 1


Query: 29  PHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRV 88
           PHFFKVVL +AL+++KLEIP++FVR+YG    L   + + V  G +W + L K +    +
Sbjct: 20  PHFFKVVLDNALRDRKLEIPKEFVRKYGND--LPSSVVLNVPTGAKWKVELFKCDG--EI 79

Query: 89  WFHNGWQKFIEYYSVKLGYFLVFKYENQSS-SFYVVIFDLTAMEIEYPIK----KIRLNE 148
           WF NGWQ+F EYYS+   YF+VF+Y+  S+  F V+I D +A EI+YP+        +N 
Sbjct: 80  WFRNGWQEFAEYYSLAHSYFIVFEYDQHSNCHFNVLILDKSATEIDYPVNYNGDDEEINN 139

Query: 149 AEKVK-----METYLDDPLDLDFKVGKISLRARKPMNFGQ---KPPSTASQRARAMAKAT 208
            EK +      +T ++ P          + + RK   F +   K    A      + +  
Sbjct: 140 LEKAENGSPHKKTKIEKPTTKFEPKRGDAEKPRKRKKFKKAVLKAQKLAHDEKEVLLQKA 199

Query: 209 AFQSMTSNPSFICKIWPSHIHLGKCLNVPRSFAEMHI-EEPTEIILQVSDGRMWSAGCGF 268
                + NP F+  +  S++H G+ L++  SFA+ H+ E+  +  L+V DGR WS     
Sbjct: 200 RMVFYSKNPFFMVAMQSSYVHKGERLHISSSFAKRHLNEKHGDGTLKVMDGRTWSIRYHV 259

Query: 269 YWTSTMKRMTDFRYGWKNFVRQNNLKVGDFCVFEM 290
             +    R+  +  GW  F R+N+L+VGD CVFE+
Sbjct: 260 ETSRGRPRVLVYS-GWNKFSRENHLEVGDVCVFEL 289

[Close]

BLAST of Lsi10G005980 vs. TAIR10
Match: AT3G18990.1 (AT3G18990.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 89.7 bits (221), Expect = 3.3e-18
Identity = 47/135 (34.81%), Postives = 82/135 (60.74%), Query Frame = 1


Query: 29  PHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRV 88
           P F K++ +  ++E++L +P KFV ++  K  L+  + + V DG  W +GL K++N  ++
Sbjct: 4   PFFHKLIFSSTIQEKRLRVPDKFVSKF--KDELSVAVALTVPDGHVWRVGLRKADN--KI 63

Query: 89  WFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEAEKVK 148
           WF +GWQ+F++ YS+++GY L+F+YE  +S+F V IF+L+  EI Y    +  +     K
Sbjct: 64  WFQDGWQEFVDRYSIRIGYLLIFRYEG-NSAFSVYIFNLSHSEINYHSTGLMDSAHNHFK 123

Query: 149 METYLDDPLDLDFKV 164
                +D  D D +V
Sbjct: 124 RARLFEDLEDEDAEV 133

[Close]

BLAST of Lsi10G005980 vs. TAIR10
Match: AT3G18960.1 (AT3G18960.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 81.6 bits (200), Expect = 9.0e-16
Identity = 49/156 (31.41%), Postives = 93/156 (59.62%), Query Frame = 1


Query: 7   MASSSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQIC 66
           + S SH R     + P K      FFK+VL   +K++ ++IP +FV+  G K  L++ + 
Sbjct: 11  VTSVSHRRSQQDPESPVKK-----FFKLVLPSTMKDKMMKIPPRFVKLQGSK--LSEVVT 70

Query: 67  VKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFD 126
           ++   G + ++ L +   G+ +WFH GW +F E +S++ G+FL+F+Y+ ++SSF V+IF+
Sbjct: 71  LETPAGFKRSIKLKRI--GEEIWFHEGWSEFAEAHSIEEGHFLLFEYK-ENSSFRVIIFN 130

Query: 127 LTAMEIEYPIKKIRLNEAEKVKMETYLDDPLDLDFK 163
           ++A E +YP+  + + +++        DD +D+  K
Sbjct: 131 VSACETKYPLDAVHIIDSD--------DDIIDITGK 148

[Close]

BLAST of Lsi10G005980 vs. TAIR10
Match: AT4G01580.1 (AT4G01580.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 76.6 bits (187), Expect = 2.9e-14
Identity = 44/137 (32.12%), Postives = 82/137 (59.85%), Query Frame = 1


Query: 9   SSSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVK 68
           S SH +     + P K      FFK+VL   +K++ + IP +FV+  G K  L++ + + 
Sbjct: 13  SVSHRQSQQDPESPVKK-----FFKLVLPSTMKDKMMRIPPRFVKLQGSK--LSEVVTLV 72

Query: 69  VGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLT 128
              G + ++ L +   G+ +WFH GW +F E +S++ G+FL+F+Y+ ++SSF V+IF+ +
Sbjct: 73  TPAGYKRSIKLKRI--GEEIWFHEGWSEFAEAHSIEEGHFLLFEYK-KNSSFRVIIFNAS 132

Query: 129 AMEIEYPIKKIRLNEAE 146
           A E  YP+  + + +++
Sbjct: 133 ACETNYPLDAVHIIDSD 139

[Close]

BLAST of Lsi10G005980 vs. TAIR10
Match: AT1G49475.1 (AT1G49475.1 AP2/B3-like transcriptional factor family protein)

HSP 1 Score: 72.4 bits (176), Expect = 5.5e-13
Identity = 49/147 (33.33%), Postives = 79/147 (53.74%), Query Frame = 1


Query: 3   PIPVMASSSHHR----PNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVK 62
           P P+ ++++  R    P   VK+         F K++L   + E+ +++P +FVR +G K
Sbjct: 11  PGPITSAATQRRLKPEPEPTVKK---------FIKIILLSRIIEKMMKVPARFVR-FGPK 70

Query: 63  ALLNDQICVKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSS 122
             L D + ++   G + ++ + +   G  VWF  GW +F E +S+  G+FL F YE  S 
Sbjct: 71  --LTDNVTLQTPVGFKRSIRIKRI--GDEVWFEKGWSEFAEAHSLSDGHFLFFHYEGDSC 130

Query: 123 SFYVVIFDLTAMEIEYPIKKIRLNEAE 146
            F VVIFD++A EIEYP+     N  E
Sbjct: 131 -FRVVIFDVSASEIEYPLDDTDDNREE 142

[Close]

BLAST of Lsi10G005980 vs. TAIR10
Match: AT1G49480.1 (AT1G49480.1 related to vernalization1 1)

HSP 1 Score: 59.7 bits (143), Expect = 3.7e-09
Identity = 40/130 (30.77%), Postives = 62/130 (47.69%), Query Frame = 1


Query: 178 QKPPSTASQRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCLNVPRSFAEMHIEEPTE 237
           +K   TA +R RA+  A  F+   +NP F   + PS+++ G  + +P  FAE ++   + 
Sbjct: 103 RKRTVTAEERERAVNAAKTFEP--TNPYFRVVLRPSYLYRGCIMYLPSGFAEKYLSGISG 162

Query: 238 IILQVSDGRMWSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVGDFCVFEMIRKNSRRI 297
            I      + W   C  Y     K    F  GW  F  +NN+  GD CVFE++R  +R  
Sbjct: 163 FIKLQLGEKQWPVRC-LYKAGRAK----FSQGWYEFTLENNIGEGDVCVFELLR--TRDF 222

Query: 298 CFKVEVFRAS 308
             +V  FR +
Sbjct: 223 VLEVTAFRVN 223

[Close]

BLAST of Lsi10G005980 vs. NCBI nr
Match: gi|659116200|ref|XP_008457959.1| (PREDICTED: putative B3 domain-containing protein Os03g0621600 [Cucumis melo])

HSP 1 Score: 443.4 bits (1139), Expect = 3.3e-121
Identity = 218/305 (71.48%), Postives = 251/305 (82.30%), Query Frame = 1


Query: 7   MASSSHHRPNDVVKRPRKAS-DNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQI 66
           MASSSHH+PN +VK+P KA   NPHFFKVVL  ALKEQKLEIPRKFVREYG++ALL DQ+
Sbjct: 1   MASSSHHQPNSIVKQPDKALLHNPHFFKVVLDDALKEQKLEIPRKFVREYGLQALLKDQV 60

Query: 67  CVKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIF 126
           C+KV DGKEWN+GLTKSNNG RVWFH GW+K +E+YSVK GYFLVFKYENQSSS YVVIF
Sbjct: 61  CLKVRDGKEWNVGLTKSNNGTRVWFHYGWEKLVEFYSVKSGYFLVFKYENQSSSLYVVIF 120

Query: 127 DLTAMEIEYPIKKIRLNEA-EKVKMETYLDDPLDLDFKVGKISLRARKPMNFGQKPPSTA 186
           D TA EIEYP+KKI L+++ E+VKMETY DD LDLDFK G +S   +KP N   KPPST 
Sbjct: 121 DRTATEIEYPVKKISLDKSKERVKMETYFDDDLDLDFKDGDLSFGVKKPTNSRWKPPSTG 180

Query: 187 SQRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCLNVPRSFAEMHIEE-PTEIILQVS 246
           SQ+ARAMAKA  FQSMT NPSFICK+WPSHIH  K L++P+SFA+MH+E+  T+IIL+ S
Sbjct: 181 SQQARAMAKANRFQSMTLNPSFICKVWPSHIHRTKSLSIPKSFADMHVEDSTTKIILKAS 240

Query: 247 DGRMWSAGCGFYWTS-TMKRMTDFRYGWKNFVRQNNLKVGDFCVFEMIRKNSRRICFKVE 306
           DGRMWS GCGFYWT   M+RMT F+YGWK+F+R N L VGDFCVFEM  KN   I FKVE
Sbjct: 241 DGRMWSGGCGFYWTPYKMQRMTYFKYGWKSFIRDNYLTVGDFCVFEMTGKNCTTISFKVE 300

Query: 307 VFRAS 308
           +F AS
Sbjct: 301 IFTAS 305

[Close]

BLAST of Lsi10G005980 vs. NCBI nr
Match: gi|700206924|gb|KGN62043.1| (hypothetical protein Csa_2G292240 [Cucumis sativus])

HSP 1 Score: 380.9 bits (977), Expect = 2.0e-102
Identity = 186/265 (70.19%), Postives = 216/265 (81.51%), Query Frame = 1


Query: 46  EIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRVWFHNGWQKFIEYYSVKL 105
           EIPRKFVREYG+KALL DQIC+KV DGKEWN+GLTKSNNG RVW H GW+K + +YSVK 
Sbjct: 3   EIPRKFVREYGLKALLKDQICLKVRDGKEWNVGLTKSNNGTRVWLHYGWEKLVGFYSVKS 62

Query: 106 GYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEA-EKVKMETYLDDP-LDLDFKV 165
           GYFLVFKYEN S SFYVVIFD TA EIEYP+KK RL++A EKVKMETY DD  LDLDFK 
Sbjct: 63  GYFLVFKYENPSPSFYVVIFDHTATEIEYPVKKTRLDKAKEKVKMETYFDDDCLDLDFKD 122

Query: 166 GKISLRARKPMNFGQKPPSTASQRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCLNV 225
           G +S   +KP N   +PPST SQ+ARAMA+A  FQSMT NPSFICKIWPSHIH  K L++
Sbjct: 123 GDLSSGVKKPTNSRWRPPSTGSQQARAMAEANRFQSMTLNPSFICKIWPSHIHRTKSLSI 182

Query: 226 PRSFAEMHIEEP-TEIILQVSDGRMWSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVG 285
           P++FA+M++E+  T+IIL+ SDGRMWS  CGFYWT  M+RMT ++YGWK+F+R NNL VG
Sbjct: 183 PKNFADMNLEDSITKIILKASDGRMWSGECGFYWTPKMQRMTFYKYGWKSFIRDNNLAVG 242

Query: 286 DFCVFEMIRKNSRRICFKVEVFRAS 308
           DFCVFEM  KNS  + FKVE FRAS
Sbjct: 243 DFCVFEMTGKNSTTVAFKVESFRAS 267

[Close]

BLAST of Lsi10G005980 vs. NCBI nr
Match: gi|659116202|ref|XP_008457960.1| (PREDICTED: putative B3 domain-containing protein Os03g0621600 [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 2.5e-92
Identity = 191/310 (61.61%), Postives = 223/310 (71.94%), Query Frame = 1


Query: 2   EPIPVMASSSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALL 61
           + +P M SSS  + NDVVK+P KASDNPHFFKVV A ALKEQKLEIPRKFVREYGVKA  
Sbjct: 273 QELPFMGSSSRPK-NDVVKQPCKASDNPHFFKVVSARALKEQKLEIPRKFVREYGVKAFA 332

Query: 62  NDQICVKVG-DGKEWNLGLTKSNNGKRVWFHN-GWQKFIEYYSVKLGYFLVFKYENQSSS 121
            +QIC+KV  DG++WN+ LTK+N+G RVWFH+ GWQ F+E+YSV L YFLVFKYE QSSS
Sbjct: 333 TNQICLKVAADGRKWNVRLTKTNDGTRVWFHDDGWQMFVEFYSVGLEYFLVFKYERQSSS 392

Query: 122 FYVVIFDLTAMEIEYPIKKIRL--NEAEKVKMETYLDDPLDLDFKVGKISLRARKPMNFG 181
           FYVVIFD TA EIEYP+K I    +  EKVK ET +   L +D    K  LR+       
Sbjct: 393 FYVVIFDRTATEIEYPMKIIICIDDAEEKVKKETNISQEL-MD---NKKKLRS------- 452

Query: 182 QKPPSTASQRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCLNVPRSFAEMHIEEPTE 241
               +T SQR +AMA ATAFQSMT NPSF+CK+ PSHIH  + LNVP+ F EMHIE+  E
Sbjct: 453 ----TTTSQREKAMANATAFQSMTINPSFLCKMSPSHIH--RSLNVPKRFVEMHIEKSME 512

Query: 242 IILQVSDGRMWSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVGDFCVFEMIRKNSRRI 301
            ILQVSDGR W   C FY    MK+  +    W+ F + NNLKVGDFCVFEMI K+S RI
Sbjct: 513 SILQVSDGRTWEGSCCFYMNKRMKKRAELASSWRKFKKDNNLKVGDFCVFEMIGKSSTRI 564

Query: 302 CFKVEVFRAS 308
            FKVE+FRAS
Sbjct: 573 SFKVEIFRAS 564

[Close]

BLAST of Lsi10G005980 vs. NCBI nr
Match: gi|449460668|ref|XP_004148067.1| (PREDICTED: B3 domain-containing protein REM8-like [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 139/216 (64.35%), Postives = 169/216 (78.24%), Query Frame = 1


Query: 10  SSHHRPNDVVKRPRKASDNPHFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKV 69
           S ++  N+VVKRPRKA D+PHFFKVV+A ALK+QKLEIP KFVREYGVKA   +QIC+KV
Sbjct: 3   SFNYWTNNVVKRPRKALDSPHFFKVVMASALKDQKLEIPTKFVREYGVKAFATNQICLKV 62

Query: 70  -GDGKEWNLGLTKSNNGKRVWFH-NGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDL 129
             DG++WN+GLTKSN+G RVWFH +GWQ F+E+YSV L YFLVFKYE QSSSFYVVIFD 
Sbjct: 63  AADGRKWNVGLTKSNDGTRVWFHDHGWQTFVEFYSVGLEYFLVFKYECQSSSFYVVIFDR 122

Query: 130 TAMEIEYPIKKIRLNEA-EKVKMETYLDDPLDLDFKVGKISLRARKPMNFGQKP-PSTAS 189
           TA EIEYPIK I L++A EKVK ET++      D K G+++  A + M+  +K  P+T +
Sbjct: 123 TATEIEYPIKIICLDDAEEKVKKETHISQ----DSKTGEVNFGAVELMDNKKKLWPTTTN 182

Query: 190 QRARAMAKATAFQSMTSNPSFICKIWPSHIHLGKCL 222
           QR RAMA A+AFQSMT NPSF+CK+  SHIH GK L
Sbjct: 183 QRERAMASASAFQSMTLNPSFMCKMSTSHIHPGKSL 214

[Close]

BLAST of Lsi10G005980 vs. NCBI nr
Match: gi|823242294|ref|XP_012453831.1| (PREDICTED: B3 domain-containing protein LOC_Os12g40080-like [Gossypium raimondii])

HSP 1 Score: 162.2 bits (409), Expect = 1.5e-36
Identity = 109/311 (35.05%), Postives = 167/311 (53.70%), Query Frame = 1


Query: 30  HFFKVVLAHALKEQKLEIPRKFVREYGVKALLNDQICVKVGDGKEWNLGLTKSNNGKRVW 89
           HFFKVVL   ++  KLEIPRKF R+YG +  L++ + +KV +G+ W L  TKS  G ++W
Sbjct: 5   HFFKVVLEDTIRSGKLEIPRKFARDYGNR--LSNPVFIKVPNGEIWELEFTKS--GGKMW 64

Query: 90  FHNGWQKFIEYYSVKLGYFLVFKYENQSSSFYVVIFDLTAMEIEYPIKKIRLNEAE---- 149
             +GWQ F E+YSV+ G+FLVF+YE     F+V+IFD TA EIEYP   +  NE      
Sbjct: 65  LQDGWQNFAEHYSVESGHFLVFRYEGHCH-FHVIIFDRTATEIEYP--DVNDNEETQKQE 124

Query: 150 -KVKMETYLDDPLDLDFKVG-----KISLRARKP---------------------MNFGQ 209
            K+K E+  D+P+ +  ++      K  L+  +P                     M    
Sbjct: 125 VKIKQESEDDEPISIMNEISHGLRQKPGLQCPRPHKTMKSETMLSGFSAGTGRGEMELTT 184

Query: 210 KPPSTASQRARAMAK-ATAFQSMTSNPSFICKIWPSHI-HLGK---CLNVPRSFAEMHIE 269
               T+ ++   + + A+AFQS  +NP F+  + P+++ H  K    L +PR F+ + ++
Sbjct: 185 ASKVTSDEKFMVLQRVASAFQS--TNPFFLVLMQPTYVSHNPKHSCILGIPREFSRLFLK 244

Query: 270 EPTEIILQVSDGRMWSAGCGFYWTSTMKRMTDFRYGWKNFVRQNNLKVGDFCVFEMIRKN 305
           +   ++L  S+G+ W+A       S  +       GW  FVR  NL+VGD C FE+I  N
Sbjct: 245 QNGNVVLCDSNGKSWAAKYATSLGSNQRPYVRLCNGWGAFVRDKNLQVGDVCAFELI--N 304

The following BLAST results are available for this feature:

BLAST of Lsi10G005980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VRN1_ARATH	5.9e-17	34.81	B3 domain-containing transcription factor VRN1 OS=Arabidopsis thaliana GN=VRN1 P...	[more]
Y3896_ARATH	1.6e-14	31.41	B3 domain-containing protein At3g18960 OS=Arabidopsis thaliana GN=At3g18960 PE=2...	[more]
Y3123_ORYSJ	2.3e-13	26.02	B3 domain-containing protein Os03g0212300 OS=Oryza sativa subsp. japonica GN=Os0...	[more]
Y4158_ARATH	5.1e-13	32.12	B3 domain-containing protein At4g01580 OS=Arabidopsis thaliana GN=At4g01580 PE=2...	[more]
Y1475_ARATH	9.7e-12	33.33	B3 domain-containing protein At1g49475 OS=Arabidopsis thaliana GN=At1g49475 PE=2...	[more]

BLAST of Lsi10G005980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJV0_CUCSA	1.4e-102	70.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G292240 PE=4 SV=1	[more]
A0A059B061_EUCGR	1.8e-36	37.54	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01965 PE=4 SV=1	[more]
A0A067LKV0_JATCU	1.1e-35	32.51	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01474 PE=4 SV=1	[more]
G7J3B6_MEDTR	5.3e-33	34.23	Plant-specific B3-DNA-binding domain protein OS=Medicago truncatula GN=MTR_3g098...	[more]
A0A067LCJ3_JATCU	6.9e-33	34.55	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01468 PE=4 SV=1	[more]

BLAST of Lsi10G005980 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18990.1	3.3e-18	34.81	AP2/B3-like transcriptional factor family protein	[more]
AT3G18960.1	9.0e-16	31.41	AP2/B3-like transcriptional factor family protein	[more]
AT4G01580.1	2.9e-14	32.12	AP2/B3-like transcriptional factor family protein	[more]
AT1G49475.1	5.5e-13	33.33	AP2/B3-like transcriptional factor family protein	[more]
AT1G49480.1	3.7e-09	30.77	related to vernalization1 1	[more]

BLAST of Lsi10G005980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659116200\|ref\|XP_008457959.1\|	3.3e-121	71.48	PREDICTED: putative B3 domain-containing protein Os03g0621600 [Cucumis melo]	[more]
gi\|700206924\|gb\|KGN62043.1\|	2.0e-102	70.19	hypothetical protein Csa_2G292240 [Cucumis sativus]	[more]
gi\|659116202\|ref\|XP_008457960.1\|	2.5e-92	61.61	PREDICTED: putative B3 domain-containing protein Os03g0621600 [Cucumis melo]	[more]
gi\|449460668\|ref\|XP_004148067.1\|	1.1e-63	64.35	PREDICTED: B3 domain-containing protein REM8-like [Cucumis sativus]	[more]
gi\|823242294\|ref\|XP_012453831.1\|	1.5e-36	35.05	PREDICTED: B3 domain-containing protein LOC_Os12g40080-like [Gossypium raimondii...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR015300	DNA-bd_pseudobarrel_sf
IPR003340	B3_DNA-bd

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G005980.1	Lsi10G005980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003340	B3 DNA binding domain	PFAM	PF02362	B3	coord: 212..300 score: 1.5E-16coord: 31..126 score: 4.2
IPR003340	B3 DNA binding domain	SMART	SM01019	B3_2	coord: 31..128 score: 4.0E-15coord: 207..301 score: 8.3
IPR003340	B3 DNA binding domain	PROFILE	PS50863	B3	coord: 206..307 score: 12.605coord: 30..128 score: 12
IPR015300	DNA-binding pseudobarrel domain	GENE3D	G3DSA:2.40.330.10		coord: 200..306 score: 3.6E-21coord: 25..127 score: 7.4
IPR015300	DNA-binding pseudobarrel domain	unknown	SSF101936	DNA-binding pseudobarrel domain	coord: 202..305 score: 6.67E-20coord: 26..135 score: 6.08
None	No IPR available	PANTHER	PTHR31674	FAMILY NOT NAMED	coord: 14..303 score: 1.7
None	No IPR available	PANTHER	PTHR31674:SF1	SUBFAMILY NOT NAMED	coord: 14..303 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G005980	Csa6G489960	Cucumber (Chinese Long) v2	culsiB420
Lsi10G005980	Csa2G292240	Cucumber (Chinese Long) v2	culsiB093
Lsi10G005980	CSPI02G14640	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G005980	Cucsa.366500	Cucumber (Gy14) v1	cgylsiB594
Lsi10G005980	CmaCh20G011390	Cucurbita maxima (Rimu)	cmalsiB508
Lsi10G005980	MELO3C020923	Melon (DHL92) v3.5.1	lsimeB054
Lsi10G005980	Cla97C01G015520	Watermelon (97103) v2	lsiwmbB038
Lsi10G005980	CsGy6G027150	Cucumber (Gy14) v2	cgyblsiB388
Lsi10G005980	CsGy2G014640	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G005980	CsaV3_6G042830	Cucumber (Chinese Long) v3	cuclsiB446

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Lsi10G005980	Lsi01G010130	Bottle gourd (USVL1VR-Ls)	lsilsiB027

The following block(s) are covering this gene:

None