Lsi10G005550 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G005550
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosomal protein L26, component of cytosolic 80S ribosome and 60S large subunit
Location	chr10 : 8109059 .. 8109499 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTTCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAGTACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCAAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCATTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGCGTCGACTAA

mRNA sequence

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTTCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAGTACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCAAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCATTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTTCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAGTACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCAAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCATTGCTCGATCGTAAGGCTAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACCGCTGAGGATATTATGCAAAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDRKAKGRASADKDKGTKFTAEDIMQSVD

Homology

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BLAST of Lsi10G005550 vs. Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Lsi10G005550 vs. Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.0e-64
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Lsi10G005550 vs. Swiss-Prot
Match: RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.5e-60
Identity = 115/145 (79.31%), Postives = 135/145 (93.10%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HF+A SS RR+ MS+PLS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSV 146
           KAKGRA+ADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of Lsi10G005550 vs. Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 96/142 (67.61%), Postives = 120/142 (84.51%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

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BLAST of Lsi10G005550 vs. Swiss-Prot
Match: RL26_MOUSE (60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.5e-44
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

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BLAST of Lsi10G005550 vs. TrEMBL
Match: A0A0A0LJI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285350 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.3e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. TrEMBL
Match: W9RS71_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.4e-69
Identity = 136/146 (93.15%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. TrEMBL
Match: A0A061F5L5_THECC (Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 6.4e-69
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLS DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. TrEMBL
Match: W9RUQ0_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009396 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-68
Identity = 135/146 (92.47%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. TrEMBL
Match: A0A0A0KGI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 1.9e-68
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR++MSAPLS DLRSKYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           K KGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. TAIR10
Match: AT3G49910.1 (AT3G49910.1 Translation protein SH3-like family protein)

HSP 1 Score: 250.4 bits (638), Expect = 7.0e-67
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Lsi10G005550 vs. TAIR10
Match: AT5G67510.1 (AT5G67510.1 Translation protein SH3-like family protein)

HSP 1 Score: 245.7 bits (626), Expect = 1.7e-65
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Lsi10G005550 vs. NCBI nr
Match: gi|659115979|ref|XP_008457837.1| (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 4.0e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. NCBI nr
Match: gi|449460590|ref|XP_004148028.1| (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. NCBI nr
Match: gi|703123225|ref|XP_010102767.1| (60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 268.1 bits (684), Expect = 9.1e-69
Identity = 136/146 (93.15%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. NCBI nr
Match: gi|590638131|ref|XP_007029307.1| (Translation protein SH3-like family protein [Theobroma cacao])

HSP 1 Score: 268.1 bits (684), Expect = 9.1e-69
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLS DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Lsi10G005550 vs. NCBI nr
Match: gi|449448216|ref|XP_004141862.1| (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus])

HSP 1 Score: 266.5 bits (680), Expect = 2.7e-68
Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR++MSAPLS DLRSKYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           K KGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

The following BLAST results are available for this feature:

BLAST of Lsi10G005550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL261_ARATH	1.2e-65	84.93	60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2	[more]
RL262_ARATH	3.0e-64	83.56	60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1	[more]
RL26_BRACM	4.5e-60	79.31	60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1	[more]
RL26_RAT	1.6e-44	67.61	60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1	[more]
RL26_MOUSE	3.5e-44	67.61	60S ribosomal protein L26 OS=Mus musculus GN=Rpl26 PE=1 SV=1	[more]

BLAST of Lsi10G005550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJI3_CUCSA	2.3e-71	99.32	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285350 PE=4 SV=1	[more]
W9RS71_9ROSA	6.4e-69	93.15	60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1	[more]
A0A061F5L5_THECC	6.4e-69	93.84	Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=...	[more]
W9RUQ0_9ROSA	1.9e-68	92.47	60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009396 PE=3 SV=1	[more]
A0A0A0KGI0_CUCSA	1.9e-68	93.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1	[more]

BLAST of Lsi10G005550 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49910.1	7.0e-67	84.93	Translation protein SH3-like family protein	[more]
AT5G67510.1	1.7e-65	83.56	Translation protein SH3-like family protein	[more]

BLAST of Lsi10G005550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659115979\|ref\|XP_008457837.1\|	4.0e-72	100.00	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo]	[more]
gi\|449460590\|ref\|XP_004148028.1\|	3.4e-71	99.32	PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus]	[more]
gi\|703123225\|ref\|XP_010102767.1\|	9.1e-69	93.15	60S ribosomal protein L26-1 [Morus notabilis]	[more]
gi\|590638131\|ref\|XP_007029307.1\|	9.1e-69	93.84	Translation protein SH3-like family protein [Theobroma cacao]	[more]
gi\|449448216\|ref\|XP_004141862.1\|	2.7e-68	93.84	PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR014722	Rib_L2_dom2
IPR008991	Translation_prot_SH3-like_sf
IPR005825	Ribosomal_L24/26_CS
IPR005824	KOW
IPR005756	Ribosomal_L26/L24P_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G005550.1	Lsi10G005550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 2
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 2..146 score: 7.5E
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 score: 7.2
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	TIGRFAMs	TIGR01080	TIGR01080	coord: 8..122 score: 2.4
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 score: 8.7
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 score: 4.
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69 scor
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 8..125 score: 4.73
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 7..125 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G005550	Csa2G285350	Cucumber (Chinese Long) v2	culsiB093
Lsi10G005550	CSPI02G14220	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G005550	Cucsa.366940	Cucumber (Gy14) v1	cgylsiB594
Lsi10G005550	CmaCh20G010150	Cucurbita maxima (Rimu)	cmalsiB512
Lsi10G005550	CmoCh02G005490	Cucurbita moschata (Rifu)	cmolsiB539
Lsi10G005550	Cla020201	Watermelon (97103) v1	lsiwmB065
Lsi10G005550	MELO3C020906	Melon (DHL92) v3.5.1	lsimeB046
Lsi10G005550	ClCG02G012650	Watermelon (Charleston Gray)	lsiwcgB045
Lsi10G005550	MELO3C020906.2	Melon (DHL92) v3.6.1	lsimedB048
Lsi10G005550	Cla97C02G038330	Watermelon (97103) v2	lsiwmbB044
Lsi10G005550	Bhi10G001704	Wax gourd	lsiwgoB082
Lsi10G005550	Cp4.1LG05g11350	Cucurbita pepo (Zucchini)	cpelsiB596
Lsi10G005550	CsGy2G014100	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G005550	Carg11613	Silver-seed gourd	carlsiB969
Lsi10G005550	CsaV3_2G016760	Cucumber (Chinese Long) v3	cuclsiB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G005550	Silver-seed gourd	carlsiB738
Lsi10G005550	Silver-seed gourd	carlsiB963
Lsi10G005550	Cucumber (Chinese Long) v3	cuclsiB446
Lsi10G005550	Watermelon (97103) v2	lsiwmbB038
Lsi10G005550	Bottle gourd (USVL1VR-Ls)	lsilsiB027
Lsi10G005550	Cucurbita maxima (Rimu)	cmalsiB546
Lsi10G005550	Cucurbita maxima (Rimu)	cmalsiB554
Lsi10G005550	Cucurbita moschata (Rifu)	cmolsiB488
Lsi10G005550	Cucurbita moschata (Rifu)	cmolsiB530
Lsi10G005550	Cucurbita pepo (Zucchini)	cpelsiB604
Lsi10G005550	Cucumber (Chinese Long) v2	culsiB420
Lsi10G005550	Melon (DHL92) v3.5.1	lsimeB054
Lsi10G005550	Cucumber (Gy14) v2	cgyblsiB388
Lsi10G005550	Melon (DHL92) v3.6.1	lsimedB056