Csa2G285350 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa2G285350
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	60S ribosomal protein L26, putative; contains IPR005756 (Ribosomal protein L26/L24P, eukaryotic/archaeal), IPR008991 (Translation protein SH3-like domain)
Location	Chr2 : 13452314 .. 13453106 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTCTTTGCCTTTGGTTAACTTCAATTTCCCTCAGAGACCCAAAAACCCTAATCAATCACAATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGCAAGGCACACTTCTCCGCGCCGTCCAGCGTACGGCGGATTTTGATGAGTGCGACCCTCTCCGGCGACCTTCGTTCTAAGTACAATGTCCGCTCCATGCCGATCCGGAAGGACGACGAAGTTCAGGTCTTGAGAGGAACGTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCATATTGAGCGCATCACTAGAGAGAAAGTGAATGGCTCCACTGTTAATGTTGGAATTAAGCCGTCGAAGGTTATGATTACGAAGCTCAAGTTGGATAAGGATAGGAAGTCGTTGCTTGATCGTAAGGCTAAGGGTCGTGCTTCTGCAGATAAGGATAAGGGTACTAAATTCACTGCTGAGGATATTATGCAAAGCGTCGACTAATTTTAATCTGGTGAAAATTTTTGAAATTTCCTCTTAGTTTTAGTTCTTACCCTGTTTTTATTTGCTTTCAAACTTGAGGTTTTGTCTTTGTTTGTTCTGGAATGAGGAGACAATGTTTTATTGTTTTTTAATTTTGATGCTTCGAGTTCTGCCTTTGCTCTCAATACCTGGATTTTTTTGTTATTTTTCAATGCAATATCATAAGATTCCTTTCTTCATATCTCTGTTCTTGTCCTTTGAATGAAGAATTGATCTTGATTTAGTTTCTGGTCGACAGGCATTGTTGTT

mRNA sequence

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGCAAGGCACACTTCTCCGCGCCGTCCAGCGTACGGCGGATTTTGATGAGTGCGACCCTCTCCGGCGACCTTCGTTCTAAGTACAATGTCCGCTCCATGCCGATCCGGAAGGACGACGAAGTTCAGGTCTTGAGAGGAACGTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCATATTGAGCGCATCACTAGAGAGAAAGTGAATGGCTCCACTGTTAATGTTGGAATTAAGCCGTCGAAGGTTATGATTACGAAGCTCAAGTTGGATAAGGATAGGAAGTCGTTGCTTGATCGTAAGGCTAAGGGTCGTGCTTCTGCAGATAAGGATAAGGGTACTAAATTCACTGCTGAGGATATTATGCAAAGCGTCGACTAA

Coding sequence (CDS)

ATGAAGTACAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGCAAGGCACACTTCTCCGCGCCGTCCAGCGTACGGCGGATTTTGATGAGTGCGACCCTCTCCGGCGACCTTCGTTCTAAGTACAATGTCCGCTCCATGCCGATCCGGAAGGACGACGAAGTTCAGGTCTTGAGAGGAACGTACAAAGGCCGTGAAGGTAAGGTCGTACAGGTCTACCGTCGCAAGTGGATCATTCATATTGAGCGCATCACTAGAGAGAAAGTGAATGGCTCCACTGTTAATGTTGGAATTAAGCCGTCGAAGGTTATGATTACGAAGCTCAAGTTGGATAAGGATAGGAAGTCGTTGCTTGATCGTAAGGCTAAGGGTCGTGCTTCTGCAGATAAGGATAAGGGTACTAAATTCACTGCTGAGGATATTATGCAAAGCGTCGACTAA

Protein sequence

MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDRKAKGRASADKDKGTKFTAEDIMQSVD*

Homology

[Close]

BLAST of Csa2G285350 vs. Swiss-Prot
Match: RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2)

HSP 1 Score: 255.0 bits (650), Expect = 5.0e-67
Identity = 123/146 (84.25%), Postives = 139/146 (95.21%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+ LS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Csa2G285350 vs. Swiss-Prot
Match: RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-65
Identity = 121/146 (82.88%), Postives = 138/146 (94.52%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+ LS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Csa2G285350 vs. Swiss-Prot
Match: RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-61
Identity = 114/145 (78.62%), Postives = 132/145 (91.03%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HF+A SS RR+ MS+ LS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSV 146
           KAKGRA+ADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of Csa2G285350 vs. Swiss-Prot
Match: RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.4e-46
Identity = 95/142 (66.90%), Postives = 117/142 (82.39%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+ LS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of Csa2G285350 vs. Swiss-Prot
Match: RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.4e-45
Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+ LS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of Csa2G285350 vs. TrEMBL
Match: A0A0A0LJI3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285350 PE=4 SV=1)

HSP 1 Score: 286.2 bits (731), Expect = 2.3e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. TrEMBL
Match: A0A061F5L5_THECC (Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.6e-70
Identity = 136/146 (93.15%), Postives = 143/146 (97.95%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSA LS DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. TrEMBL
Match: W9RS71_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 2.6e-70
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSA LSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. TrEMBL
Match: A0A061DP29_THECC (Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_000792 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 4.4e-70
Identity = 134/146 (91.78%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSA++S DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRVLMSASVSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. TrEMBL
Match: A0A0A0KGI0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 7.6e-70
Identity = 136/146 (93.15%), Postives = 143/146 (97.95%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR++MSA LS DLRSKYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVIMSAPLSTDLRSKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           K KGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KGKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. TAIR10
Match: AT3G49910.1 (AT3G49910.1 Translation protein SH3-like family protein)

HSP 1 Score: 255.0 bits (650), Expect = 2.8e-68
Identity = 123/146 (84.25%), Postives = 139/146 (95.21%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+ LS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Csa2G285350 vs. TAIR10
Match: AT5G67510.1 (AT5G67510.1 Translation protein SH3-like family protein)

HSP 1 Score: 250.4 bits (638), Expect = 7.0e-67
Identity = 121/146 (82.88%), Postives = 138/146 (94.52%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+ LS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Csa2G285350 vs. NCBI nr
Match: gi|449460590|ref|XP_004148028.1| (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus])

HSP 1 Score: 286.2 bits (731), Expect = 3.3e-74
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. NCBI nr
Match: gi|659115979|ref|XP_008457837.1| (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo])

HSP 1 Score: 283.9 bits (725), Expect = 1.6e-73
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. NCBI nr
Match: gi|703123225|ref|XP_010102767.1| (60S ribosomal protein L26-1 [Morus notabilis])

HSP 1 Score: 272.7 bits (696), Expect = 3.7e-70
Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSA LSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. NCBI nr
Match: gi|590638131|ref|XP_007029307.1| (Translation protein SH3-like family protein [Theobroma cacao])

HSP 1 Score: 272.7 bits (696), Expect = 3.7e-70
Identity = 136/146 (93.15%), Postives = 143/146 (97.95%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSA LS DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Csa2G285350 vs. NCBI nr
Match: gi|590705729|ref|XP_007047521.1| (Translation protein SH3-like family protein [Theobroma cacao])

HSP 1 Score: 271.9 bits (694), Expect = 6.4e-70
Identity = 134/146 (91.78%), Postives = 144/146 (98.63%), Query Frame = 1


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRR+LMSA++S DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRVLMSASVSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

The following BLAST results are available for this feature:

BLAST of Csa2G285350 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL261_ARATH	5.0e-67	84.25	60S ribosomal protein L26-1 OS=Arabidopsis thaliana GN=RPL26A PE=2 SV=2	[more]
RL262_ARATH	1.2e-65	82.88	60S ribosomal protein L26-2 OS=Arabidopsis thaliana GN=RPL26B PE=2 SV=1	[more]
RL26_BRACM	1.9e-61	78.62	60S ribosomal protein L26 OS=Brassica campestris GN=RPL26 PE=2 SV=1	[more]
RL26_RAT	6.4e-46	66.90	60S ribosomal protein L26 OS=Rattus norvegicus GN=Rpl26 PE=1 SV=1	[more]
RL26_BOVIN	1.4e-45	66.90	60S ribosomal protein L26 OS=Bos taurus GN=RPL26 PE=2 SV=1	[more]

BLAST of Csa2G285350 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJI3_CUCSA	2.3e-74	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G285350 PE=4 SV=1	[more]
A0A061F5L5_THECC	2.6e-70	93.15	Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_025183 PE=...	[more]
W9RS71_9ROSA	2.6e-70	92.47	60S ribosomal protein L26-1 OS=Morus notabilis GN=L484_009395 PE=3 SV=1	[more]
A0A061DP29_THECC	4.4e-70	91.78	Translation protein SH3-like family protein OS=Theobroma cacao GN=TCM_000792 PE=...	[more]
A0A0A0KGI0_CUCSA	7.6e-70	93.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495670 PE=4 SV=1	[more]

BLAST of Csa2G285350 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49910.1	2.8e-68	84.25	Translation protein SH3-like family protein	[more]
AT5G67510.1	7.0e-67	82.88	Translation protein SH3-like family protein	[more]

BLAST of Csa2G285350 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449460590\|ref\|XP_004148028.1\|	3.3e-74	100.00	PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus]	[more]
gi\|659115979\|ref\|XP_008457837.1\|	1.6e-73	99.32	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo]	[more]
gi\|703123225\|ref\|XP_010102767.1\|	3.7e-70	92.47	60S ribosomal protein L26-1 [Morus notabilis]	[more]
gi\|590638131\|ref\|XP_007029307.1\|	3.7e-70	93.15	Translation protein SH3-like family protein [Theobroma cacao]	[more]
gi\|590705729\|ref\|XP_007047521.1\|	6.4e-70	91.78	Translation protein SH3-like family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005756	Ribosomal_L26/L24P_euk/arc
IPR005824	KOW
IPR005825	Ribosomal_L24/26_CS
IPR008991	Translation_prot_SH3-like_sf
IPR014722	Rib_L2_dom2

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0015934	large ribosomal subunit
GO:0005622	intracellular
GO:0005840	ribosome

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU100222	cucumber EST collection version 3.0	transcribed_cluster
CU122614	cucumber EST collection version 3.0	transcribed_cluster
CU167058	cucumber EST collection version 3.0	transcribed_cluster
CU170299	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa2G285350.1	Csa2G285350.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU100222	CU100222	transcribed_cluster
CU167058	CU167058	transcribed_cluster
CU122614	CU122614	transcribed_cluster
CU170299	CU170299	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 2..146 score: 1.2E
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 score: 3.3
IPR005756	Ribosomal protein L26/L24P, eukaryotic/archaeal	TIGRFAMs	TIGR01080	TIGR01080	coord: 8..122 score: 4.9
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 score: 8.7
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 score: 4.
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69 scor
IPR008991	Translation protein SH3-like domain	unknown	SSF50104	Translation proteins SH3-like domain	coord: 8..125 score: 9.89
IPR014722	Ribosomal protein L2 domain 2	GENE3D	G3DSA:2.30.30.30		coord: 7..125 score: 5.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa2G285350	Cla020201	Watermelon (97103) v1	cuwmB140
Csa2G285350	MELO3C020906	Melon (DHL92) v3.5.1	cumeB094
Csa2G285350	ClCG02G012650	Watermelon (Charleston Gray)	cuwcgB119
Csa2G285350	Lsi10G005550	Bottle gourd (USVL1VR-Ls)	culsiB093
Csa2G285350	MELO3C020906.2	Melon (DHL92) v3.6.1	cumedB083
Csa2G285350	Cla97C02G038330	Watermelon (97103) v2	cuwmbB115
Csa2G285350	Bhi10G001704	Wax gourd	cuwgoB186
Csa2G285350	CSPI02G14220	Wild cucumber (PI 183967)	cpicuB065
Csa2G285350	Cucsa.366940	Cucumber (Gy14) v1	cgycuB513
Csa2G285350	CsGy2G014100	Cucumber (Gy14) v2	cgybcuB056

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Csa2G285350	Csa6G495670	Cucumber (Chinese Long) v2	cucuB071

The following block(s) are covering this gene:


Gene	Organism	Block
Csa2G285350	Melon (DHL92) v3.6.1	cumedB094
Csa2G285350	Silver-seed gourd	carcuB1070
Csa2G285350	Wax gourd	cuwgoB175
Csa2G285350	Cucurbita maxima (Rimu)	cmacuB540
Csa2G285350	Cucurbita maxima (Rimu)	cmacuB582
Csa2G285350	Cucurbita maxima (Rimu)	cmacuB852
Csa2G285350	Cucurbita moschata (Rifu)	cmocuB529
Csa2G285350	Cucurbita moschata (Rifu)	cmocuB571
Csa2G285350	Cucurbita moschata (Rifu)	cmocuB839
Csa2G285350	Watermelon (97103) v1	cuwmB138
Csa2G285350	Cucurbita pepo (Zucchini)	cpecuB272
Csa2G285350	Cucurbita pepo (Zucchini)	cpecuB479
Csa2G285350	Cucurbita pepo (Zucchini)	cpecuB710