Cla97C02G038330 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G038330
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	60S ribosomal protein L26-1-like
Location	Cla97Chr02 : 25692979 .. 25693419 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTCCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAATACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTGCAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCGAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCGCTGCTCGATCGTAAGGCCAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACGGCTGAGGATATTATGCAAAGTGTCGATTAA

mRNA sequence

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTCCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAATACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTGCAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCGAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCGCTGCTCGATCGTAAGGCCAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACGGCTGAGGATATTATGCAAAGTGTCGATTAA

Coding sequence (CDS)

ATGAAGTATAACCCTAGAGTCTCCAGCTCCCGCCGTAAGAATCGTAAGGCTCACTTCTCCGCGCCGTCGAGCGTCCGGCGGATTTTGATGAGTGCGCCCCTCTCCGGCGACCTCCGCTCCAAATACAATGTCCGCTCGATGCCGATCCGCAAGGACGACGAAGTTCAGGTCTTGAGAGGAACCTACAAAGGCCGTGAAGGTAAGGTCGTGCAGGTCTACCGTCGCAAGTGGATCATTCACATTGAGCGCATCACTAGAGAGAAGGTGAACGGCTCCACCGTCAATGTCGGAATCAAGCCGTCGAAGGTTATGATCACAAAGCTCAAGTTGGATAAGGACAGGAAATCGCTGCTCGATCGTAAGGCCAAGGGCCGTGCTTCTGCAGATAAGGATAAGGGCACTAAATTCACGGCTGAGGATATTATGCAAAGTGTCGATTAA

Protein sequence

MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRGTYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDRKAKGRASADKDKGTKFTAEDIMQSVD

Homology

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BLAST of Cla97C02G038330 vs. NCBI nr
Match: XP_008457837.1 (PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo])

HSP 1 Score: 279.3 bits (713), Expect = 7.7e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of Cla97C02G038330 vs. NCBI nr
Match: XP_004148028.1 (PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetical protein Csa_2G285350 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 6.5e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of Cla97C02G038330 vs. NCBI nr
Match: XP_022149443.1 (60S ribosomal protein L26-1-like [Momordica charantia])

HSP 1 Score: 275.4 bits (703), Expect = 1.1e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHF+APSSVRRILMSAPLSGDLRSKYNVRSMP+RKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFTAPSSVRRILMSAPLSGDLRSKYNVRSMPVRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of Cla97C02G038330 vs. NCBI nr
Match: XP_022948229.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023532418.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.9 bits (699), Expect = 3.2e-70
Identity = 140/146 (95.89%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIER+TREKVNGSTVNVG+ PSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERVTREKVNGSTVNVGMNPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRAS+DKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASSDKDKGTKFTAEDIMQSVD 146

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BLAST of Cla97C02G038330 vs. NCBI nr
Match: XP_022931741.1 (60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S ribosomal protein L26-1-like [Cucurbita maxima] >XP_023521000.1 60S ribosomal protein L26-1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.5 bits (698), Expect = 4.2e-70
Identity = 142/146 (97.26%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHFSAPSSVRR+LMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFSAPSSVRRVLMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGI PSKV+ITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGINPSKVVITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of Cla97C02G038330 vs. TrEMBL
Match: tr|A0A1S3C7Q4|A0A1S3C7Q4_CUCME (60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 5.1e-72
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

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BLAST of Cla97C02G038330 vs. TrEMBL
Match: tr|A0A0A0LJI3|A0A0A0LJI3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285350 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.3e-71
Identity = 145/146 (99.32%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSA LSGDLRSKYNVRSMPIRKDDEVQVLRG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSATLSGDLRSKYNVRSMPIRKDDEVQVLRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRASADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRASADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Cla97C02G038330 vs. TrEMBL
Match: tr|A0A1R3I630|A0A1R3I630_COCAP (Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Corchorus capsularis OX=210143 GN=CCACVL1_14727 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.3e-69
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLS DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Cla97C02G038330 vs. TrEMBL
Match: tr|A0A1R3FXG3|A0A1R3FXG3_9ROSI (Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Corchorus olitorius OX=93759 GN=COLO4_38036 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 5.3e-69
Identity = 138/146 (94.52%), Postives = 144/146 (98.63%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLS DLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSSDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Cla97C02G038330 vs. TrEMBL
Match: tr|W9RS71|W9RS71_9ROSA (60S ribosomal protein L26-1 OS=Morus notabilis OX=981085 GN=L484_009395 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 1.2e-68
Identity = 136/146 (93.15%), Postives = 145/146 (99.32%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRVSSSRRK+RKAHF+APSSVRR+LMSAPLSGDLRSKYNVRSMP+RKDDEVQV+RG
Sbjct: 1   MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSGDLRSKYNVRSMPVRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNGSTVNVGI PSKV+ITKL+LDKDRKSLLDR
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGINPSKVVITKLRLDKDRKSLLDR 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADKDKGTKFTAEDIMQSVD
Sbjct: 121 KAKGRAAADKDKGTKFTAEDIMQSVD 146

[Close]

BLAST of Cla97C02G038330 vs. Swiss-Prot
Match: sp|P51414|RL261_ARATH (60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2)

HSP 1 Score: 250.4 bits (638), Expect = 1.3e-65
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Cla97C02G038330 vs. Swiss-Prot
Match: sp|Q9FJX2|RL262_ARATH (60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 3.1e-64
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

[Close]

BLAST of Cla97C02G038330 vs. Swiss-Prot
Match: sp|Q39411|RL26_BRACM (60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.6e-60
Identity = 115/145 (79.31%), Postives = 135/145 (93.10%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRR+NRK HF+A SS RR+ MS+PLS DLR KYNVRSMPIRKDDE Q++RG
Sbjct: 1   MKYNPRVTSSRRRNRKPHFTASSSERRVXMSSPLSTDLRQKYNVRSMPIRKDDEXQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGK+ QVYRRK +IHIER+TREKVNG+TVNVG++P+KV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKLXQVYRRKXVIHIERLTREKVNGTTVNVGVQPTKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSV 146
           KAKGRA+ADKDKGTKFTA D+MQ+V
Sbjct: 121 KAKGRAAADKDKGTKFTAVDVMQNV 145

[Close]

BLAST of Cla97C02G038330 vs. Swiss-Prot
Match: sp|P12749|RL26_RAT (60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 1.6e-44
Identity = 96/142 (67.61%), Postives = 120/142 (84.51%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI+PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIRPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of Cla97C02G038330 vs. Swiss-Prot
Match: sp|P61257|RL26_BOVIN (60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 3.6e-44
Identity = 96/142 (67.61%), Postives = 119/142 (83.80%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NP V+S R KNRK HF+APS +RR +MS+PLS +LR KYNVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGRE-GKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLD 120
            YKG++ GKVVQVYR+K++I+IER+ REK NG+TV+VGI PSKV+IT+LKLDKDRK +L+
Sbjct: 61  HYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLDKDRKKILE 120

Query: 121 RKAKGRASADKDKGTKFTAEDI 142
           RKAK R    K+KG K+  E I
Sbjct: 121 RKAKSR-QVGKEKG-KYKEETI 140

[Close]

BLAST of Cla97C02G038330 vs. TAIR10
Match: AT3G49910.1 (Translation protein SH3-like family protein)

HSP 1 Score: 250.4 bits (638), Expect = 7.0e-67
Identity = 124/146 (84.93%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MKYNPRV+SSRRKNRKAHF+A SS RR++MS+PLS DLR KYNVRSMPIRKDDEVQ++RG
Sbjct: 1   MKYNPRVTSSRRKNRKAHFTASSSERRVIMSSPLSTDLRQKYNVRSMPIRKDDEVQIVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           TYKGREGKVVQVYRRKW+IHIERITREKVNG+TVNVGI+PSKV+ITKL+LDKDRKSLL+R
Sbjct: 61  TYKGREGKVVQVYRRKWVIHIERITREKVNGTTVNVGIQPSKVVITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KAKGRA+ADK+KGTKFT+ED+MQ+VD
Sbjct: 121 KAKGRAAADKEKGTKFTSEDVMQNVD 146

[Close]

BLAST of Cla97C02G038330 vs. TAIR10
Match: AT5G67510.1 (Translation protein SH3-like family protein)

HSP 1 Score: 245.7 bits (626), Expect = 1.7e-65
Identity = 122/146 (83.56%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MKYNPRVSSSRRKNRKAHFSAPSSVRRILMSAPLSGDLRSKYNVRSMPIRKDDEVQVLRG 60
           MK+NPRVSSSRRKNRKAHF+APSSVRR+LMS+PLS DLR+K+NVRSMPIRKDDEVQV+RG
Sbjct: 1   MKFNPRVSSSRRKNRKAHFTAPSSVRRVLMSSPLSKDLRNKHNVRSMPIRKDDEVQVVRG 60

Query: 61  TYKGREGKVVQVYRRKWIIHIERITREKVNGSTVNVGIKPSKVMITKLKLDKDRKSLLDR 120
           T+KGREGKV+QVYRRKW+IHIERITREKVNGSTVNVG+  S VMITKL+LDKDRKSLL+R
Sbjct: 61  TFKGREGKVMQVYRRKWVIHIERITREKVNGSTVNVGVNASNVMITKLRLDKDRKSLLER 120

Query: 121 KAKGRASADKDKGTKFTAEDIMQSVD 147
           KA GRA+ADK+KGTKF+AED+M++VD
Sbjct: 121 KANGRAAADKEKGTKFSAEDVMENVD 146

The following BLAST results are available for this feature:

BLAST of Cla97C02G038330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457837.1	7.7e-72	100.00	PREDICTED: 60S ribosomal protein L26-1-like [Cucumis melo]	[more]
XP_004148028.1	6.5e-71	99.32	PREDICTED: 60S ribosomal protein L26-1 [Cucumis sativus] >KGN62000.1 hypothetica...	[more]
XP_022149443.1	1.1e-70	97.26	60S ribosomal protein L26-1-like [Momordica charantia]	[more]
XP_022948229.1	3.2e-70	95.89	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_023007349.1 60S riboso...	[more]
XP_022931741.1	4.2e-70	97.26	60S ribosomal protein L26-1-like [Cucurbita moschata] >XP_022973193.1 60S riboso...	[more]

BLAST of Cla97C02G038330 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C7Q4\|A0A1S3C7Q4_CUCME	5.1e-72	100.00	60S ribosomal protein L26-1-like OS=Cucumis melo OX=3656 GN=LOC103497426 PE=3 SV...	[more]
tr\|A0A0A0LJI3\|A0A0A0LJI3_CUCSA	4.3e-71	99.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G285350 PE=4 SV=1	[more]
tr\|A0A1R3I630\|A0A1R3I630_COCAP	5.3e-69	94.52	Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Corchorus capsularis OX=21014...	[more]
tr\|A0A1R3FXG3\|A0A1R3FXG3_9ROSI	5.3e-69	94.52	Ribosomal protein L26/L24P, eukaryotic/archaeal OS=Corchorus olitorius OX=93759 ...	[more]
tr\|W9RS71\|W9RS71_9ROSA	1.2e-68	93.15	60S ribosomal protein L26-1 OS=Morus notabilis OX=981085 GN=L484_009395 PE=3 SV=...	[more]

BLAST of Cla97C02G038330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|P51414\|RL261_ARATH	1.3e-65	84.93	60S ribosomal protein L26-1 OS=Arabidopsis thaliana OX=3702 GN=RPL26A PE=2 SV=2	[more]
sp\|Q9FJX2\|RL262_ARATH	3.1e-64	83.56	60S ribosomal protein L26-2 OS=Arabidopsis thaliana OX=3702 GN=RPL26B PE=2 SV=1	[more]
sp\|Q39411\|RL26_BRACM	4.6e-60	79.31	60S ribosomal protein L26 OS=Brassica campestris OX=3711 GN=RPL26 PE=2 SV=1	[more]
sp\|P12749\|RL26_RAT	1.6e-44	67.61	60S ribosomal protein L26 OS=Rattus norvegicus OX=10116 GN=Rpl26 PE=1 SV=1	[more]
sp\|P61257\|RL26_BOVIN	3.6e-44	67.61	60S ribosomal protein L26 OS=Bos taurus OX=9913 GN=RPL26 PE=2 SV=1	[more]

BLAST of Cla97C02G038330 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G49910.1	7.0e-67	84.93	Translation protein SH3-like family protein	[more]
AT5G67510.1	1.7e-65	83.56	Translation protein SH3-like family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular
GO:0015934	large ribosomal subunit

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR008991	Translation_prot_SH3-like_sf
IPR005825	Ribosomal_L24/26_CS
IPR014722	Rib_L2_dom2
IPR005756	Ribosomal_L26/L24P_euk/arc
IPR005824	KOW

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G038330.1	Cla97C02G038330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 48..75 e-value: 4.9E-6 score: 36.1
IPR005824	KOW	PFAM	PF00467	KOW	coord: 51..82 e-value: 8.3E-10 score: 38.2
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	TIGRFAM	TIGR01080	TIGR01080	coord: 8..122 e-value: 2.4E-51 score: 171.0
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PFAM	PF16906	Ribosomal_L26	coord: 8..121 e-value: 8.2E-39 score: 131.9
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	PANTHER	PTHR11143	60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER	coord: 1..146
IPR005756	Ribosomal protein L26/L24, eukaryotic/archaeal	HAMAP	MF_01326_A	Ribosomal_L24_A	coord: 9..121 score: 20.47
IPR014722	Ribosomal protein L2, domain 2	GENE3D	G3DSA:2.30.30.30		coord: 1..144 e-value: 9.2E-58 score: 196.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR11143:SF13	60S RIBOSOMAL PROTEIN L26-1-RELATED	coord: 1..146
None	No IPR available	CDD	cd06089	KOW_RPL26	coord: 52..105 e-value: 1.44423E-14 score: 63.6878
IPR005825	Ribosomal protein L24/L26, conserved site	PROSITE	PS01108	RIBOSOMAL_L24	coord: 52..69
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	SSF50104	Translation proteins SH3-like domain	coord: 8..125

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G038330	Cla020201	Watermelon (97103) v1	wmwmbB316
Cla97C02G038330	Csa2G285350	Cucumber (Chinese Long) v2	cuwmbB115
Cla97C02G038330	MELO3C020906	Melon (DHL92) v3.5.1	mewmbB095
Cla97C02G038330	ClCG02G012650	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G038330	CSPI02G14220	Wild cucumber (PI 183967)	cpiwmbB117
Cla97C02G038330	Cucsa.366940	Cucumber (Gy14) v1	cgywmbB635
Cla97C02G038330	CmaCh20G010150	Cucurbita maxima (Rimu)	cmawmbB588
Cla97C02G038330	CmoCh02G005490	Cucurbita moschata (Rifu)	cmowmbB613
Cla97C02G038330	Lsi10G005550	Bottle gourd (USVL1VR-Ls)	lsiwmbB044
Cla97C02G038330	CsGy2G014100	Cucumber (Gy14) v2	cgybwmbB110
Cla97C02G038330	MELO3C020906.2	Melon (DHL92) v3.6.1	medwmbB091
Cla97C02G038330	Carg11613	Silver-seed gourd	carwmbB1120
Cla97C02G038330	CsaV3_2G016760	Cucumber (Chinese Long) v3	cucwmbB120
Cla97C02G038330	Bhi10G001704	Wax gourd	wgowmbB374

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G038330	Watermelon (97103) v2	wmbwmbB011
Cla97C02G038330	Silver-seed gourd	carwmbB1116
Cla97C02G038330	Cucurbita maxima (Rimu)	cmawmbB621
Cla97C02G038330	Cucurbita maxima (Rimu)	cmawmbB641
Cla97C02G038330	Cucurbita moschata (Rifu)	cmowmbB556
Cla97C02G038330	Cucurbita moschata (Rifu)	cmowmbB594
Cla97C02G038330	Melon (DHL92) v3.6.1	medwmbB101
Cla97C02G038330	Melon (DHL92) v3.5.1	mewmbB108