Lsi10G004480 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G004480
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	SAUR-like auxin-responsive protein family
Location	chr10 : 6612425 .. 6612667 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATACTGTTTCTTCTAGAAATCAATGTGGTGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATTGAAAGAAAGCGGTTTGTAGTTCCAATATCATACTTAAACCATCCTTCCTTTTCAGCTTTGCTCAAGAGTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAGTCTCACATCCAGGCTGCAAACTTCCTGA

mRNA sequence

ATGCATACTGTTTCTTCTAGAAATCAATGTGGTGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATTGAAAGAAAGCGGTTTGTAGTTCCAATATCATACTTAAACCATCCTTCCTTTTCAGCTTTGCTCAAGAGTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAGTCTCACATCCAGGCTGCAAACTTCCTGA

Coding sequence (CDS)

ATGCATACTGTTTCTTCTAGAAATCAATGTGGTGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATTGAAAGAAAGCGGTTTGTAGTTCCAATATCATACTTAAACCATCCTTCCTTTTCAGCTTTGCTCAAGAGTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAGTCTCACATCCAGGCTGCAAACTTCCTGA

Protein sequence

MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFISLTSRLQTS

Homology

[Close]

BLAST of Lsi10G004480 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.2e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-22
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +E+EFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VPISYLN PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSR Q
Sbjct: 85 VTSRFQ 90

[Close]

BLAST of Lsi10G004480 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-22
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 4  VSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTI 63
          +S       PKG +AVYVG+ ++KR++VP+SYL+ PSF ALL  +EEEFGF HP GGLTI
Sbjct: 14 LSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTI 73

Query: 64 PCREDVFISLTSRLQ 79
          PC ED FI++TSRLQ
Sbjct: 74 PCPEDTFINVTSRLQ 88

[Close]

BLAST of Lsi10G004480 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-22
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYL+ PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCREDVFI+LTSRLQ S
Sbjct: 78 LTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of Lsi10G004480 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-28
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M +VS+R    +PKGHIAVYVG+IERKRFVVP+SYLNHP+F +LL  AEEEFGF HP+GG
Sbjct: 18 MQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLSLLNRAEEEFGFNHPSGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPC+ED FI LTS+L TS
Sbjct: 78 LTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of Lsi10G004480 vs. TrEMBL
Match: A0A0A0LJ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-27
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
           M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVPISYL HPSF  LL  +EEEFGF HP GG
Sbjct: 126 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 185

Query: 61  LTIPCREDVFISLTSRLQTS 81
           LTIPCRED FI+LT+RL TS
Sbjct: 186 LTIPCREDAFINLTARLHTS 205

[Close]

BLAST of Lsi10G004480 vs. TrEMBL
Match: A0A0A0LPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258770 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.3e-27
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 6  SRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPC 65
          ++NQ  VPKGH+ VYVG++++KRFVVPISYLNHPSF  LLK AEEEFGF+HP GGLTIPC
Sbjct: 23 TKNQLSVPKGHVVVYVGEMQKKRFVVPISYLNHPSFQQLLKYAEEEFGFQHPQGGLTIPC 82

Query: 66 REDVFISLTSRLQTS 81
          +ED FI LTSRLQ S
Sbjct: 83 KEDTFIDLTSRLQVS 97

[Close]

BLAST of Lsi10G004480 vs. TrEMBL
Match: A0A0A0LIZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-27
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1


Query: 3  TVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLT 62
          ++S R Q  VPKGHIAVYVG+I++KRF+VPISYLNHPSF  LL+ AEEEFGF HPTGGLT
Sbjct: 20 SISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLDLLRRAEEEFGFNHPTGGLT 79

Query: 63 IPCREDVFISLTSRLQTS 81
          IPC+E+ FI +TSRL TS
Sbjct: 80 IPCKEEAFIDVTSRLHTS 97

[Close]

BLAST of Lsi10G004480 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-25
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 6  SRNQCGVPKGHIAVYVGDI-ERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIP 65
          S N   +PKGH+AVYVG++ +++RFVVP++YL+HP F  LL+ AEEEFGF HP GGLTIP
Sbjct: 22 SSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGLTIP 81

Query: 66 CREDVFISLTSRLQTS 81
          C E +FI L SRL TS
Sbjct: 82 CTEQIFIDLASRLSTS 97

[Close]

BLAST of Lsi10G004480 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-24
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 5   SSRNQCGVPKGHIAVYVGD---IERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGL 64
           SS +   VPKGH+AVYVG+   +E+KRFVVPIS+LNHPSF   L  AEEEFGF HP GGL
Sbjct: 28  SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 65  TIPCREDVFISL-TSRLQ 79
           TIPCRE+VF+ L  SRLQ
Sbjct: 88  TIPCREEVFLDLIASRLQ 105

[Close]

BLAST of Lsi10G004480 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-24
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 5  SSRNQCGVPKGHIAVYVGDI--ERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLT 64
          S + Q  VPKGH+AVYVG+    +KRFVVPISYLNHPSF  LL  AEEEFGF HP GGLT
Sbjct: 14 SQKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLT 73

Query: 65 IPCREDVFISL 74
          IPCRE+ F+ L
Sbjct: 74 IPCREETFVGL 84

[Close]

BLAST of Lsi10G004480 vs. TAIR10
Match: AT5G18080.1 (AT5G18080.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-24
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480 vs. TAIR10
Match: AT5G18050.1 (AT5G18050.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-24
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +E+EFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCREDVFI+LTSRLQ S
Sbjct: 78 LTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of Lsi10G004480 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCREDVFI+LTSRLQ S
Sbjct: 78 LTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of Lsi10G004480 vs. NCBI nr
Match: gi|778669580|ref|XP_011649270.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M +VS+R    +PKGHIAVYVG+IERKRFVVP+SYLNHP+F +LL  AEEEFGF HP+GG
Sbjct: 18 MQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLSLLNRAEEEFGFNHPSGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPC+ED FI LTS+L TS
Sbjct: 78 LTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of Lsi10G004480 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-27
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVPISYL HPSF  LL  +EEEFGF HP GG
Sbjct: 18 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCRED FI+LT+RL TS
Sbjct: 78 LTIPCREDAFINLTARLHTS 97

[Close]

BLAST of Lsi10G004480 vs. NCBI nr
Match: gi|700206766|gb|KGN61885.1| (hypothetical protein Csa_2G258810 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-27
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
           M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVPISYL HPSF  LL  +EEEFGF HP GG
Sbjct: 126 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 185

Query: 61  LTIPCREDVFISLTSRLQTS 81
           LTIPCRED FI+LT+RL TS
Sbjct: 186 LTIPCREDAFINLTARLHTS 205

The following BLAST results are available for this feature:

BLAST of Lsi10G004480 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU24_ARATH	9.2e-23	69.70	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU22_ARATH	1.6e-22	68.18	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU20_ARATH	2.1e-22	69.70	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU21_ARATH	2.7e-22	61.33	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1	[more]
SAU19_ARATH	4.6e-22	68.18	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1	[more]

BLAST of Lsi10G004480 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM71_CUCSA	3.2e-38	96.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	8.7e-28	72.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]
A0A0A0LJ03_CUCSA	1.5e-27	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1	[more]
A0A0A0LPI5_CUCSA	4.3e-27	74.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258770 PE=4 SV=1	[more]
A0A0A0LIZ4_CUCSA	5.6e-27	73.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1	[more]

BLAST of Lsi10G004480 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21210.1	4.7e-25	63.16	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	1.4e-24	67.95	SAUR-like auxin-responsive protein family	[more]
AT4G34800.1	4.0e-24	69.01	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	5.2e-24	69.70	SAUR-like auxin-responsive protein family	[more]
AT5G18050.1	8.9e-24	68.18	SAUR-like auxin-responsive protein family	[more]

BLAST of Lsi10G004480 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458562\|ref\|XP_004147016.1\|	4.6e-38	96.25	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115600\|ref\|XP_008457637.1\|	4.6e-38	96.25	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669580\|ref\|XP_011649270.1\|	1.2e-27	72.50	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669614\|ref\|XP_011649278.1\|	2.1e-27	75.00	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|700206766\|gb\|KGN61885.1\|	2.1e-27	75.00	hypothetical protein Csa_2G258810 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G004480.1	Lsi10G004480.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 8..76 score: 4.3
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 5..80 score: 6.4
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 5..80 score: 6.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi10G004480	Csa2G258780	Cucumber (Chinese Long) v2	culsiB093
Lsi10G004480	CmaCh02G003410	Cucurbita maxima (Rimu)	cmalsiB548
Lsi10G004480	CmaCh20G007840	Cucurbita maxima (Rimu)	cmalsiB507
Lsi10G004480	CmoCh20G007860	Cucurbita moschata (Rifu)	cmolsiB489
Lsi10G004480	CmoCh20G007790	Cucurbita moschata (Rifu)	cmolsiB491
Lsi10G004480	Cla016634	Watermelon (97103) v1	lsiwmB084
Lsi10G004480	MELO3C020769	Melon (DHL92) v3.5.1	lsimeB054
Lsi10G004480	MELO3C020771.2	Melon (DHL92) v3.6.1	lsimedB056
Lsi10G004480	Bhi10G001515	Wax gourd	lsiwgoB080
Lsi10G004480	CsaV3_2G015550	Cucumber (Chinese Long) v3	cuclsiB104

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G004480	Watermelon (97103) v2	lsiwmbB043
Lsi10G004480	Bottle gourd (USVL1VR-Ls)	lsilsiB021
Lsi10G004480	Cucumber (Gy14) v1	cgylsiB281
Lsi10G004480	Cucumber (Gy14) v1	cgylsiB282
Lsi10G004480	Cucumber (Gy14) v1	cgylsiB617
Lsi10G004480	Cucurbita maxima (Rimu)	cmalsiB089
Lsi10G004480	Cucurbita maxima (Rimu)	cmalsiB466
Lsi10G004480	Cucurbita moschata (Rifu)	cmolsiB073
Lsi10G004480	Cucurbita moschata (Rifu)	cmolsiB451
Lsi10G004480	Cucurbita moschata (Rifu)	cmolsiB533
Lsi10G004480	Cucurbita pepo (Zucchini)	cpelsiB220
Lsi10G004480	Cucurbita pepo (Zucchini)	cpelsiB388
Lsi10G004480	Cucurbita pepo (Zucchini)	cpelsiB436
Lsi10G004480	Cucurbita pepo (Zucchini)	cpelsiB589
Lsi10G004480	Wild cucumber (PI 183967)	cpilsiB091
Lsi10G004480	Wild cucumber (PI 183967)	cpilsiB497
Lsi10G004480	Cucumber (Chinese Long) v2	culsiB489
Lsi10G004480	Melon (DHL92) v3.5.1	lsimeB064
Lsi10G004480	Watermelon (Charleston Gray)	lsiwcgB039
Lsi10G004480	Watermelon (Charleston Gray)	lsiwcgB057
Lsi10G004480	Watermelon (97103) v1	lsiwmB079
Lsi10G004480	Cucumber (Gy14) v2	cgyblsiB086
Lsi10G004480	Cucumber (Gy14) v2	cgyblsiB456