CmoCh20G007860 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh20G007860
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSAUR-like auxin-responsive protein family
LocationCmo_Chr20 : 3916788 .. 3918746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGGTTTGACAATTCTTTTTAGAGAAGATGCCTTTATCAACCTCATTTCTAGGCTGCATACTTCTTGAAAGAGTGAAGAAAAACAAATTTCCACACAGTTTTGCAGAATTTCTTTCATTGTTTTCTTCTTTTTGCCACAGTTGAGGAGTAGAATATCAATGCATAGTTAGTTTCTATATGTATGAAGAAGCAAAAGTTGATTCAATATCAGTGTACGATTTATAATTGCAGAGATGGAAATATAGAAATGGATTCACATTTTCTTATTGAAATACTGCTTGCTTCAGCCTCTGAATTTTGATCTATTTAAACTCCATCTTTTGACTCTTTCCTTGATGTTTTTGTGTTATGATACTTGGACATATATGTGCACTAATTTTTTTTCACAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGGTATCTTATTTACAAAGAAGTGTTAGATCACCTTGCACATGATGGAAACTAAACTCTTTCTCGACATGTTTGAGAACTCTTGGAATGAAGAACGGCTGAGATTCGATACTGTGACCATAGGGGTTTTCTTTCGATCTCTCCCATCTAAACTGCTAAATAATCGTCTAGAACATCTAGTTGGTTCAGGTGAAACGTATTGCATCTCAAGGATTTTCTTGCTATGCAGAATTAGAAAGTTAAGACCCGGTTCGATAACCATTTGAATTTTAGTTCTTATTTTGTAAAAGTAAGCTGACAAACACTACTTCTTAAGTGATTTATCATGATCTGGCAACAGTTTTTCTTAGTTCCATGGATTGCAGGTTAACCATCACAAATAAAGCAGAAAAGAAAAGGCTATATAGATATTGAAGCTAAATTGTGTTTTCTTTTGATTCACTTCTGTTGGTAAATGCACCATTACAATGCCACTCATTTACAGGCAAGAAAGGCATTCCATTCTACAACATTCTAGTATGGGTCAAAATACAATTGAGTCAGAAACAACCAGAAAAGGTTGTAAAAAATTGCAGCTTGAGCATTGCTGTTCATCCTTCAAGATACTTGCAGTCTAGAAGTGAGATCGATGAAGGCATCTTCTTTGCAAGGAATTGTTAGGCCCCCTTGAGGATGATGGAAGCCAAACTTCTCCTCTGCGTGGCTGAGCAGTTGCTGGAACGACGGGTGGTTTAGGTAAGATATTGGAACCACGAACCGCTTCCTTTGAATCTCTCCCACGTAAACTGCTACATGGCCTTTTGGAACATCCAACTGGTTTTTGGTGAAACCTGACTGCATCTTCAGAATTTGCTTGGCATGAGGAACCAAAGATAGAAATCGAATCCCCATTTTGTTGAGATGAAAGAGTGTCAAAAAGGTCAGGAGCTAACTATAAGAGGATGTAGTACTTAAAATGAGTTGAATTCGGTGTTTGAGTCTCATTTTGATGTTTATATTTATAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGGTTCATTGGTCAATTGTTTCCGTATATCTCCTGTCAACTTATAGATACTTCCACTCCATATTCTCTGTTTTGGCATTTGGTTTTGAAGTTTTCTTGATCTCTTATTTTGGATTATAAATGCACCTCAATGAAACCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA

mRNA sequence

ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA

Coding sequence (CDS)

ATGTTTTATATTTCCTTTGTAAGGAAGCGGTTTGTAGTTCCAACATCATACTTGAGCCACCCTTCTTTTGTAGCTCTGCTCAAGAGCGCTCAACAAGAATTTGGATTTAGACATCCAACAGGAGACATTGATAATCTTGAAGTGAATGATCATTTTTCAATCTCAATGGCATTCATTCAAATTCTGGAAGAGTTTCTGAAGGAAGTGCTGTCTATGCTGGTGAGTGTGGCCTTTCCAGTGGCTCTGTGGGGTAGTGATGTCTGGTGGTTGGGTATATTTGAGTATACTGGTTCACATGGCTTTGCCCAACTCATGAAAGGGCCATCCATTTTCTTCTCCCACTCGATAGTCTCTGTATTCTATACCACAAATTTCAGTGGGACTGTCACCCGTAGTCAGGGCACATATGGAAGTGCCTGTATACAAACCAAGTAA
Homology
[Close]
BLAST of CmoCh20G007860 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.3e-06
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP SYLS PSF ALL  +++EFGF HP G +
Sbjct: 38 KKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGL 73

[Close]
BLAST of CmoCh20G007860 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 8.1e-08
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 78

[Close]
BLAST of CmoCh20G007860 vs. TrEMBL
Match: A0A0A0LJ92_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258690 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.6e-06
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRF VP SYLSHPSFV LL  A++EFGF HPTG +
Sbjct: 43 RKRFFVPISYLSHPSFVELLNKAEEEFGFSHPTGGL 78

[Close]
BLAST of CmoCh20G007860 vs. TrEMBL
Match: A0A061DZI1_THECC (SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.4e-06
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 8   RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
           RKRFVVP SYL+HPSF  LL  A++EFGF HPTG +
Sbjct: 122 RKRFVVPISYLNHPSFAELLNRAEEEFGFNHPTGGL 157

[Close]
BLAST of CmoCh20G007860 vs. TrEMBL
Match: A0A0A0LM65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.8e-06
Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRF+VP SYL+HPSFV LL  A++EFGF HPTG +
Sbjct: 43 RKRFLVPISYLNHPSFVNLLSRAEEEFGFSHPTGGL 78

[Close]
BLAST of CmoCh20G007860 vs. TrEMBL
Match: W5HY43_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.6e-06
Identity = 26/41 (63.41%), Postives = 32/41 (78.05%), Query Frame = 1 

Query: 3  YISFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          Y+   R RFV+PT+YL HPSFVALL+SA++EFGF H  G I
Sbjct: 36 YVGEARARFVIPTAYLRHPSFVALLESAEEEFGFDHHGGGI 76

[Close]
BLAST of CmoCh20G007860 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-08
Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KRFVVP SYL+HPSF  LL  A++EFGF HP G +
Sbjct: 37 KKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGL 72

[Close]
BLAST of CmoCh20G007860 vs. TAIR10
Match: AT4G34770.1 (AT4G34770.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.9 bits (128), Expect = 9.4e-08
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 

Query: 5  SFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDIDNLEVNDHFS 54
          ++ RKRFV+P SYL+HP F  LL  A++EFGF HP G +      D+F+
Sbjct: 47 TYHRKRFVIPISYLNHPLFQGLLNLAEEEFGFDHPMGGLTIPCTEDYFT 95

[Close]
BLAST of CmoCh20G007860 vs. TAIR10
Match: AT4G13790.1 (AT4G13790.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 53.1 bits (126), Expect = 1.6e-07
Identity = 21/36 (58.33%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          +KR++VP  YL+ PSF ALL+ A++EFGF HPTG +
Sbjct: 40 KKRYLVPVCYLNKPSFQALLRKAEEEFGFNHPTGGL 75

[Close]
BLAST of CmoCh20G007860 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.8 bits (125), Expect = 2.1e-07
Identity = 21/36 (58.33%), Postives = 28/36 (77.78%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          ++RFVVP +YLSHP F  LL+ A++EFGF HP G +
Sbjct: 43 KRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGL 78

[Close]
BLAST of CmoCh20G007860 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 52.0 bits (123), Expect = 3.6e-07
Identity = 22/40 (55.00%), Postives = 28/40 (70.00%), Query Frame = 1 

Query: 4  ISFVRKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          I   +KRFVVP S+L+HPSF   L  A++EFGF HP G +
Sbjct: 48 IEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

[Close]
BLAST of CmoCh20G007860 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 78

[Close]
BLAST of CmoCh20G007860 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 1.2e-07
Identity = 28/36 (77.78%), Postives = 33/36 (91.67%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF ALLKSA++EFGF+HPTG +
Sbjct: 43 RKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGGL 78

[Close]
BLAST of CmoCh20G007860 vs. NCBI nr
Match: gi|778669586|ref|XP_011649271.1| (PREDICTED: auxin-induced protein X10A-like [Cucumis sativus])

HSP 1 Score: 60.1 bits (144), Expect = 3.7e-06
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRF VP SYLSHPSFV LL  A++EFGF HPTG +
Sbjct: 43 RKRFFVPISYLSHPSFVELLNKAEEEFGFSHPTGGL 78

[Close]
BLAST of CmoCh20G007860 vs. NCBI nr
Match: gi|659115586|ref|XP_008457629.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 

Query: 8  RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
          RKRFVVP SYL+HPSF++LL  A++EFGF HP+G +
Sbjct: 43 RKRFVVPVSYLNHPSFLSLLNRAEEEFGFNHPSGGL 78

[Close]
BLAST of CmoCh20G007860 vs. NCBI nr
Match: gi|590684897|ref|XP_007041961.1| (SAUR-like auxin-responsive protein family [Theobroma cacao])

HSP 1 Score: 59.3 bits (142), Expect = 6.4e-06
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 

Query: 8   RKRFVVPTSYLSHPSFVALLKSAQQEFGFRHPTGDI 44
           RKRFVVP SYL+HPSF  LL  A++EFGF HPTG +
Sbjct: 122 RKRFVVPISYLNHPSFAELLNRAEEEFGFNHPTGGL 157

The following BLAST results are available for this feature:
BLAST of CmoCh20G007860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SAU19_ARATH8.3e-0658.33Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1[more]
BLAST of CmoCh20G007860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LM71_CUCSA8.1e-0877.78Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1[more]
A0A0A0LJ92_CUCSA2.6e-0672.22Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258690 PE=4 SV=1[more]
A0A061DZI1_THECC4.4e-0669.44SAUR-like auxin-responsive protein family OS=Theobroma cacao GN=TCM_006725 PE=4 ... [more]
A0A0A0LM65_CUCSA5.8e-0669.44Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258730 PE=4 SV=1[more]
W5HY43_WHEAT7.6e-0663.41Uncharacterized protein OS=Triticum aestivum PE=4 SV=1[more]
BLAST of CmoCh20G007860 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G34800.13.2e-0863.89 SAUR-like auxin-responsive protein family [more]
AT4G34770.19.4e-0848.98 SAUR-like auxin-responsive protein family [more]
AT4G13790.11.6e-0758.33 SAUR-like auxin-responsive protein family [more]
AT2G21210.12.1e-0758.33 SAUR-like auxin-responsive protein family [more]
AT4G34810.13.6e-0755.00 SAUR-like auxin-responsive protein family [more]
BLAST of CmoCh20G007860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659115600|ref|XP_008457637.1|1.2e-0777.78PREDICTED: auxin-induced protein 15A-like [Cucumis melo][more]
gi|449458562|ref|XP_004147016.1|1.2e-0777.78PREDICTED: auxin-induced protein 15A-like [Cucumis sativus][more]
gi|778669586|ref|XP_011649271.1|3.7e-0672.22PREDICTED: auxin-induced protein X10A-like [Cucumis sativus][more]
gi|659115586|ref|XP_008457629.1|6.4e-0666.67PREDICTED: auxin-induced protein 15A-like [Cucumis melo][more]
gi|590684897|ref|XP_007041961.1|6.4e-0669.44SAUR-like auxin-responsive protein family [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003676SAUR_fam
Vocabulary: Biological Process
TermDefinition
GO:0009733response to auxin
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh20G007860.1CmoCh20G007860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 8..39
score: 3.1
NoneNo IPR availablePANTHERPTHR31929FAMILY NOT NAMEDcoord: 8..41
score: 3.0
NoneNo IPR availablePANTHERPTHR31929:SF3SUBFAMILY NOT NAMEDcoord: 8..41
score: 3.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh20G007860Lsi10G004480Bottle gourd (USVL1VR-Ls)cmolsiB489
CmoCh20G007860MELO3C020769.2Melon (DHL92) v3.6.1cmomedB559
CmoCh20G007860Cla97C11G210310Watermelon (97103) v2cmowmbB544
CmoCh20G007860Bhi05G001511Wax gourdcmowgoB0673
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh20G007860Wild cucumber (PI 183967)cmocpiB536
CmoCh20G007860Wild cucumber (PI 183967)cmocpiB567
CmoCh20G007860Cucumber (Chinese Long) v2cmocuB531
CmoCh20G007860Cucumber (Chinese Long) v2cmocuB561
CmoCh20G007860Melon (DHL92) v3.5.1cmomeB484
CmoCh20G007860Melon (DHL92) v3.5.1cmomeB503
CmoCh20G007860Watermelon (Charleston Gray)cmowcgB476
CmoCh20G007860Watermelon (97103) v1cmowmB534
CmoCh20G007860Cucurbita pepo (Zucchini)cmocpeB517
CmoCh20G007860Cucurbita pepo (Zucchini)cmocpeB521
CmoCh20G007860Cucurbita pepo (Zucchini)cmocpeB534
CmoCh20G007860Bottle gourd (USVL1VR-Ls)cmolsiB491
CmoCh20G007860Cucumber (Gy14) v2cgybcmoB209
CmoCh20G007860Cucumber (Chinese Long) v3cmocucB0635
CmoCh20G007860Cucumber (Chinese Long) v3cmocucB0637
CmoCh20G007860Wax gourdcmowgoB0679
CmoCh20G007860Cucurbita moschata (Rifu)cmocmoB404
CmoCh20G007860Cucurbita moschata (Rifu)cmocmoB416
CmoCh20G007860Cucumber (Gy14) v1cgycmoB0482
CmoCh20G007860Cucumber (Gy14) v1cgycmoB1051
CmoCh20G007860Cucumber (Gy14) v1cgycmoB1052
CmoCh20G007860Cucurbita maxima (Rimu)cmacmoB551
CmoCh20G007860Cucurbita maxima (Rimu)cmacmoB606