Lsi10G004480.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G004480.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	SAUR-like auxin-responsive protein family
Location	chr10 : 6612425 .. 6612667 (-)
Sequence length	243

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATACTGTTTCTTCTAGAAATCAATGTGGTGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATTGAAAGAAAGCGGTTTGTAGTTCCAATATCATACTTAAACCATCCTTCCTTTTCAGCTTTGCTCAAGAGTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAGTCTCACATCCAGGCTGCAAACTTCCTGA

mRNA sequence

ATGCATACTGTTTCTTCTAGAAATCAATGTGGTGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATTGAAAGAAAGCGGTTTGTAGTTCCAATATCATACTTAAACCATCCTTCCTTTTCAGCTTTGCTCAAGAGTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAGTCTCACATCCAGGCTGCAAACTTCCTGA

Coding sequence (CDS)

ATGCATACTGTTTCTTCTAGAAATCAATGTGGTGTTCCCAAAGGCCATATTGCAGTCTATGTGGGAGATATTGAAAGAAAGCGGTTTGTAGTTCCAATATCATACTTAAACCATCCTTCCTTTTCAGCTTTGCTCAAGAGTGCTGAAGAAGAATTTGGATTTAAACATCCAACTGGAGGTTTGACAATTCCTTGCAGAGAAGATGTCTTCATCAGTCTCACATCCAGGCTGCAAACTTCCTGA

Protein sequence

MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFISLTSRLQTS

Homology

[Close]

BLAST of Lsi10G004480.1 vs. Swiss-Prot
Match: SAU24_ARATH (Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 9.2e-23
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480.1 vs. Swiss-Prot
Match: SAU22_ARATH (Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.6e-22
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +E+EFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480.1 vs. Swiss-Prot
Match: SAU20_ARATH (Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-22
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VPISYLN PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPISYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSR Q
Sbjct: 85 VTSRFQ 90

[Close]

BLAST of Lsi10G004480.1 vs. Swiss-Prot
Match: SAU21_ARATH (Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.7e-22
Identity = 46/75 (61.33%), Postives = 58/75 (77.33%), Query Frame = 1


Query: 4  VSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTI 63
          +S       PKG +AVYVG+ ++KR++VP+SYL+ PSF ALL  +EEEFGF HP GGLTI
Sbjct: 14 LSRSTASAAPKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFDHPMGGLTI 73

Query: 64 PCREDVFISLTSRLQ 79
          PC ED FI++TSRLQ
Sbjct: 74 PCPEDTFINVTSRLQ 88

[Close]

BLAST of Lsi10G004480.1 vs. Swiss-Prot
Match: SAU19_ARATH (Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.6e-22
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYL+ PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLSQPSFQALLSKSEEEFGFAHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480.1 vs. TrEMBL
Match: A0A0A0LM71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.2e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCREDVFI+LTSRLQ S
Sbjct: 78 LTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of Lsi10G004480.1 vs. TrEMBL
Match: A0A0A0LPH3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 8.7e-28
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M +VS+R    +PKGHIAVYVG+IERKRFVVP+SYLNHP+F +LL  AEEEFGF HP+GG
Sbjct: 18 MQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLSLLNRAEEEFGFNHPSGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPC+ED FI LTS+L TS
Sbjct: 78 LTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of Lsi10G004480.1 vs. TrEMBL
Match: A0A0A0LJ03_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.5e-27
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
           M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVPISYL HPSF  LL  +EEEFGF HP GG
Sbjct: 126 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 185

Query: 61  LTIPCREDVFISLTSRLQTS 81
           LTIPCRED FI+LT+RL TS
Sbjct: 186 LTIPCREDAFINLTARLHTS 205

[Close]

BLAST of Lsi10G004480.1 vs. TrEMBL
Match: A0A0A0LPI5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258770 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 4.3e-27
Identity = 56/75 (74.67%), Postives = 65/75 (86.67%), Query Frame = 1


Query: 6  SRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPC 65
          ++NQ  VPKGH+ VYVG++++KRFVVPISYLNHPSF  LLK AEEEFGF+HP GGLTIPC
Sbjct: 23 TKNQLSVPKGHVVVYVGEMQKKRFVVPISYLNHPSFQQLLKYAEEEFGFQHPQGGLTIPC 82

Query: 66 REDVFISLTSRLQTS 81
          +ED FI LTSRLQ S
Sbjct: 83 KEDTFIDLTSRLQVS 97

[Close]

BLAST of Lsi10G004480.1 vs. TrEMBL
Match: A0A0A0LIZ4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.6e-27
Identity = 57/78 (73.08%), Postives = 67/78 (85.90%), Query Frame = 1


Query: 3  TVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLT 62
          ++S R Q  VPKGHIAVYVG+I++KRF+VPISYLNHPSF  LL+ AEEEFGF HPTGGLT
Sbjct: 20 SISGRCQSSVPKGHIAVYVGEIQKKRFLVPISYLNHPSFLDLLRRAEEEFGFNHPTGGLT 79

Query: 63 IPCREDVFISLTSRLQTS 81
          IPC+E+ FI +TSRL TS
Sbjct: 80 IPCKEEAFIDVTSRLHTS 97

[Close]

BLAST of Lsi10G004480.1 vs. TAIR10
Match: AT2G21210.1 (AT2G21210.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 110.5 bits (275), Expect = 4.7e-25
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 6  SRNQCGVPKGHIAVYVGDI-ERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIP 65
          S N   +PKGH+AVYVG++ +++RFVVP++YL+HP F  LL+ AEEEFGF HP GGLTIP
Sbjct: 22 SSNNVAIPKGHLAVYVGEMMQKRRFVVPVTYLSHPCFQKLLRKAEEEFGFDHPMGGLTIP 81

Query: 66 CREDVFISLTSRLQTS 81
          C E +FI L SRL TS
Sbjct: 82 CTEQIFIDLASRLSTS 97

[Close]

BLAST of Lsi10G004480.1 vs. TAIR10
Match: AT4G34810.1 (AT4G34810.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 109.0 bits (271), Expect = 1.4e-24
Identity = 53/78 (67.95%), Postives = 61/78 (78.21%), Query Frame = 1


Query: 5   SSRNQCGVPKGHIAVYVGD---IERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGL 64
           SS +   VPKGH+AVYVG+   +E+KRFVVPIS+LNHPSF   L  AEEEFGF HP GGL
Sbjct: 28  SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 65  TIPCREDVFISL-TSRLQ 79
           TIPCRE+VF+ L  SRLQ
Sbjct: 88  TIPCREEVFLDLIASRLQ 105

[Close]

BLAST of Lsi10G004480.1 vs. TAIR10
Match: AT4G34800.1 (AT4G34800.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.5 bits (267), Expect = 4.0e-24
Identity = 49/71 (69.01%), Postives = 55/71 (77.46%), Query Frame = 1


Query: 5  SSRNQCGVPKGHIAVYVGDI--ERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLT 64
          S + Q  VPKGH+AVYVG+    +KRFVVPISYLNHPSF  LL  AEEEFGF HP GGLT
Sbjct: 14 SQKQQSRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLT 73

Query: 65 IPCREDVFISL 74
          IPCRE+ F+ L
Sbjct: 74 IPCREETFVGL 84

[Close]

BLAST of Lsi10G004480.1 vs. TAIR10
Match: AT5G18080.1 (AT5G18080.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 107.1 bits (266), Expect = 5.2e-24
Identity = 46/66 (69.70%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +EEEFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPVSYLNQPSFQALLSKSEEEFGFDHPMGGLTIPCPEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480.1 vs. TAIR10
Match: AT5G18050.1 (AT5G18050.1 SAUR-like auxin-responsive protein family )

HSP 1 Score: 106.3 bits (264), Expect = 8.9e-24
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 13 PKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGGLTIPCREDVFIS 72
          PKG +AVYVG+ ++KR++VP+SYLN PSF ALL  +E+EFGF HP GGLTIPC ED FI+
Sbjct: 25 PKGFLAVYVGESQKKRYLVPLSYLNQPSFQALLSKSEDEFGFDHPMGGLTIPCHEDTFIN 84

Query: 73 LTSRLQ 79
          +TSRLQ
Sbjct: 85 VTSRLQ 90

[Close]

BLAST of Lsi10G004480.1 vs. NCBI nr
Match: gi|449458562|ref|XP_004147016.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCREDVFI+LTSRLQ S
Sbjct: 78 LTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of Lsi10G004480.1 vs. NCBI nr
Match: gi|659115600|ref|XP_008457637.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-38
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVP+SYLNHPSFSALLKSAEEEFGFKHPTGG
Sbjct: 18 MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPLSYLNHPSFSALLKSAEEEFGFKHPTGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCREDVFI+LTSRLQ S
Sbjct: 78 LTIPCREDVFINLTSRLQIS 97

[Close]

BLAST of Lsi10G004480.1 vs. NCBI nr
Match: gi|778669580|ref|XP_011649270.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-27
Identity = 58/80 (72.50%), Postives = 68/80 (85.00%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M +VS+R    +PKGHIAVYVG+IERKRFVVP+SYLNHP+F +LL  AEEEFGF HP+GG
Sbjct: 18 MQSVSTRCHSNIPKGHIAVYVGEIERKRFVVPVSYLNHPTFLSLLNRAEEEFGFNHPSGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPC+ED FI LTS+L TS
Sbjct: 78 LTIPCKEDAFIDLTSKLHTS 97

[Close]

BLAST of Lsi10G004480.1 vs. NCBI nr
Match: gi|778669614|ref|XP_011649278.1| (PREDICTED: auxin-induced protein 15A-like [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-27
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1  MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
          M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVPISYL HPSF  LL  +EEEFGF HP GG
Sbjct: 18 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 77

Query: 61 LTIPCREDVFISLTSRLQTS 81
          LTIPCRED FI+LT+RL TS
Sbjct: 78 LTIPCREDAFINLTARLHTS 97

[Close]

BLAST of Lsi10G004480.1 vs. NCBI nr
Match: gi|700206766|gb|KGN61885.1| (hypothetical protein Csa_2G258810 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 2.1e-27
Identity = 60/80 (75.00%), Postives = 67/80 (83.75%), Query Frame = 1


Query: 1   MHTVSSRNQCGVPKGHIAVYVGDIERKRFVVPISYLNHPSFSALLKSAEEEFGFKHPTGG 60
           M  +S+RNQ  VPKGHIAVYVG+I+RKRFVVPISYL HPSF  LL  +EEEFGF HP GG
Sbjct: 126 MQAMSARNQSDVPKGHIAVYVGEIQRKRFVVPISYLKHPSFVDLLNRSEEEFGFCHPMGG 185

Query: 61  LTIPCREDVFISLTSRLQTS 81
           LTIPCRED FI+LT+RL TS
Sbjct: 186 LTIPCREDAFINLTARLHTS 205

The following BLAST results are available for this feature:

BLAST of Lsi10G004480.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SAU24_ARATH	9.2e-23	69.70	Auxin-responsive protein SAUR24 OS=Arabidopsis thaliana GN=SAUR24 PE=2 SV=1	[more]
SAU22_ARATH	1.6e-22	68.18	Auxin-responsive protein SAUR22 OS=Arabidopsis thaliana GN=SAUR22 PE=2 SV=1	[more]
SAU20_ARATH	2.1e-22	69.70	Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1	[more]
SAU21_ARATH	2.7e-22	61.33	Auxin-responsive protein SAUR21 OS=Arabidopsis thaliana GN=SAUR21 PE=2 SV=1	[more]
SAU19_ARATH	4.6e-22	68.18	Auxin-responsive protein SAUR19 OS=Arabidopsis thaliana GN=SAUR19 PE=2 SV=1	[more]

BLAST of Lsi10G004480.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM71_CUCSA	3.2e-38	96.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258780 PE=4 SV=1	[more]
A0A0A0LPH3_CUCSA	8.7e-28	72.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258670 PE=4 SV=1	[more]
A0A0A0LJ03_CUCSA	1.5e-27	75.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258810 PE=4 SV=1	[more]
A0A0A0LPI5_CUCSA	4.3e-27	74.67	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258770 PE=4 SV=1	[more]
A0A0A0LIZ4_CUCSA	5.6e-27	73.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G258710 PE=4 SV=1	[more]

BLAST of Lsi10G004480.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G21210.1	4.7e-25	63.16	SAUR-like auxin-responsive protein family	[more]
AT4G34810.1	1.4e-24	67.95	SAUR-like auxin-responsive protein family	[more]
AT4G34800.1	4.0e-24	69.01	SAUR-like auxin-responsive protein family	[more]
AT5G18080.1	5.2e-24	69.70	SAUR-like auxin-responsive protein family	[more]
AT5G18050.1	8.9e-24	68.18	SAUR-like auxin-responsive protein family	[more]

BLAST of Lsi10G004480.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449458562\|ref\|XP_004147016.1\|	4.6e-38	96.25	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|659115600\|ref\|XP_008457637.1\|	4.6e-38	96.25	PREDICTED: auxin-induced protein 15A-like [Cucumis melo]	[more]
gi\|778669580\|ref\|XP_011649270.1\|	1.2e-27	72.50	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|778669614\|ref\|XP_011649278.1\|	2.1e-27	75.00	PREDICTED: auxin-induced protein 15A-like [Cucumis sativus]	[more]
gi\|700206766\|gb\|KGN61885.1\|	2.1e-27	75.00	hypothetical protein Csa_2G258810 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0009733	response to auxin

Vocabulary: **INTERPRO**
Term	Definition
IPR003676	SAUR_fam

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009733	response to auxin
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G004480	Lsi10G004480	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G004480.1.CDS.1	Lsi10G004480.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G004480.1	Lsi10G004480.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003676	Small auxin-up RNA	PFAM	PF02519	Auxin_inducible	coord: 8..76 score: 4.3
None	No IPR available	PANTHER	PTHR31929	FAMILY NOT NAMED	coord: 5..80 score: 6.4
None	No IPR available	PANTHER	PTHR31929:SF3	SUBFAMILY NOT NAMED	coord: 5..80 score: 6.4