Lsi10G003960 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAGGAGGTGAACATGTACATGGGGAAGCCCATGGGGACTTTAGGGCTAAGGTTTGGAGCATGAGCGGAGGACCTTATTGCCGGCCCAAGCATTGGAAACGCAATACCGCTATTGCTATGGCCGGCATCGTTCTCATCTGCATCCCTATCGCTATGAAATCTGCAGAGCTTGAGGTTTCTCTTTGCCCATTTTTGTCTATCTATTCCTTGTTTTTTTTGGCTATTCAAAGATGGATTTTTATATATTTTTAATTGTCGTTTTGGGTGGGGTGAATCATGGATTCATTCTATTCCCGCCCACAATAAATAGACAAGATGTAGTGAAATTGAACTAGAATTTACATGGACTCAACCCTAACTTAAAAAATTAAGGATCTAACTACAACTCTAGGGCATGGTTTGTTTAAGGTTGTTCCCTAGCTAAATGGCTATGGCGGTAGCATCTTGAGTCTAATTCCCCTTTGGCAAAGGGTTATTGTGAGAAAATATGGGCCTCCCCTTCCGAATGGATTGGAGGGAGGGGCTAAAGGCACTTGTATAACCCCTTAGGAAGGTATAATTGAGGGTATCATATTCTTTTCATAGTTCATTGGGTGATGGAAGGGATATTTTTTCTTGGAGGATAGGTTGTTGGGGGATAGATCCCACTGCGCTCTTTTCCCTTGTTTGTATCATTTTTCATCAATTAGGAACCACTCAATGGCGGATGCGTTGCCCTTGCCCTTTTCTCAGATATTTTCTTTGCCTATGTTGGGGTTCCAATATTCTTTGTCTGATAGGGAGTTGTCAGATTTTATCTCTTTTCTCTCTTTGATTTTGGAGTTCTCTTGTAGTCTGGGGAGCAAGGATGTTCTTTTTGTAGCCATTGTCCTTTTCAAAGACTTCTTGTGAAAGTCTTTCTTTTGTTGTTTGGTCGATCCCTCTCCCTTGAATGGTGCCTTGGCCTTCCTGTGGAAGGTGAAAATTCTGAATAGTGGTTGGTTTTCCATGGATGGGTTAATACTTTGGATCGAGTTTCGAGAAGGTTGCACAATTTGATTGTTATCCTTCTCGTATATTTTTTGTAGGCGGGTGGATAAGGACCTTGATCCTATTCTCTGAAGTTGGAACTTTGCGCAGGCGATTTGGAGTTGTTTTTTTCGAGTAGTTTGGCTTGAGTTTGTCTGGACATAGGGGCTATACAAAGATGCTCGAGGAACTCCTTTCCCTCCTTTTTGCAAAAATGAAGGTTTTTATTGAAGGTCTGTGTAGTTTTGTGGAGTATTTGGGGGAGGGGAATAACTGTCTTTAGAGGTTTTGAGAGATCTTGGAGTGATGTTTGGATCCTTGTTAGGTTCAACGTCTCTCTATGGGATTCGGTGGCTAAGCCTTTATGTAACTATGCGACAGTCTTATTTTGCTTAACTTGAGGCCCTTTCTTTAGTTTGCCTCCTTTTGTGGAGGGCCCTTTGTTGTGGTCTCTTTCTTTCATGAGTTCATTTTTTGTGTGCCCTTGTATTTTTTTTTTTTTTCCCTTCAATCAATGAGAGTTACTCATTACAAAAAAATTAATAGCCTTATTGTTAATGCACGTGTGCCATGATTTGCCATGCATTGGCGTCAAAAGGGTATCTGTTTTGTATTAACTAGGCAGCCGAGACTCATACGGTAGTGGAAAAGATTTGGAAGAGTAACTCCTAGCACATGGTCTGGATTAACACCCTTTGGATCGTTGCTTGTGTTACTCCTTGGAATAGTATAAACACCATTTAACCTCTAAATTAGTTTTCATCCTTTTGGCCTTTATAACAGTTGGATTGAGTTATAAATTTGTTTGTATTGGATCTGGTTCAAATAATTGTTTTACAGAGGATAAAATTATTGGTTCATATCTCTCCTTGATACTGGAAAGGGATGGTGTAAAATTTATTGTTGAAAGTTTCAATTTTATCGGATGTCCCGAAGGGGCTAGCTGAAAGTTTTATCTGCACAAGACAGAATATTCCATATTGGTGTTCATTGAGAATGAAGAACATATAAACCCTTGAAAAGTGATGCTAGCAAAATTGCCCACATATCATCTTTTATTAAAGCTGGTGTTTCAGGATTGATATGAATTTTAGGTTTTGTCATGTCCTTATTTAGCCAACTGCTGCATTTCATATCTGAACTGCTTAGCCTTCCATAGTGTTAGAAACGAATTTTTAAATTTTAAACCCTTTTTTTACAAGAAACCATGAGAAATATATTCCGGTTGGAAGGCCTTTATGTTTGGGTGTCTTCATTCTTAGATTCTTGAAATATATTTTCTATGTATTTAATTTCTTCCCATTAGATATTTATTTGTGCTTTGATTTTTTTTTTCCTAGTATGTTTGATTGAAATAAGGTTTATTTATTTATTTATTTATTTTTACGCAGTTTCATTGATAAAATGAAATAAAGGAGTATAAACTCCAAACACTTAAGAAATTCAATTGGATATAAAAAAAGATAAGCTATAAAGTGCAAAAGGGTGTATATTCTTATGCCAAAAGAAAGTCGTAGAAAGAACCCTATCATGAAGTGCTCAGAAGAAAATGAATCATCATGAGTTGATCTAGTAATAAAAAATGAGACATAGTCTCGACTCTCAATAAATGGCTAAGAGGTCATGAGTTCAATCCATGATGGTCACTTACCTAGAAATTAATATCTTACGAGTTTTCTTGACACCAAATATTGTAGGGTTAGGTAGGTTGTCCCGTGAGATCAGTCGAGGTGCATGTATAAGCTGACGGACACTCACGAATATTAAAAAAAAAAGGTGCTTAGAAGAAAATGATACAACCCTGGGGTTGGACATTTATTTGATTTCCATCATATGATTCCAAAATTGCAGAGCCTTCTTTCATTGAAGTAAAAAAAAACTCCCTATAATTCATTGGAACTAGAATTAGAATCCACAAGCTTTTCTGAAATTTTCTGATTTGAATGTCTCCAAGTATATTCAGCGAGTAATCTCTGTCATCGCTTTTCCAATGCAGCAACGGCCACACAATCCCGTTCGGCCGATTCCCTCGCAGCTCTGGTGCAAGAATTTTGGAAACAAGGAGTACTAA ATGGGAGGAGGTGAACATGTACATGGGGAAGCCCATGGGGACTTTAGGGCTAAGGTTTGGAGCATGAGCGGAGGACCTTATTGCCGGCCCAAGCATTGGAAACGCAATACCGCTATTGCTATGGCCGGCATCGTTCTCATCTGCATCCCTATCGCTATGAAATCTGCAGAGCTTGAGCGAGTAATCTCTGTCATCGCTTTTCCAATGCAGCAACGGCCACACAATCCCGTTCGGCCGATTCCCTCGCAGCTCTGGTGCAAGAATTTTGGAAACAAGGAGTACTAA ATGGGAGGAGGTGAACATGTACATGGGGAAGCCCATGGGGACTTTAGGGCTAAGGTTTGGAGCATGAGCGGAGGACCTTATTGCCGGCCCAAGCATTGGAAACGCAATACCGCTATTGCTATGGCCGGCATCGTTCTCATCTGCATCCCTATCGCTATGAAATCTGCAGAGCTTGAGCGAGTAATCTCTGTCATCGCTTTTCCAATGCAGCAACGGCCACACAATCCCGTTCGGCCGATTCCCTCGCAGCTCTGGTGCAAGAATTTTGGAAACAAGGAGTACTAA MGGGEHVHGEAHGDFRAKVWSMSGGPYCRPKHWKRNTAIAMAGIVLICIPIAMKSAELERVISVIAFPMQQRPHNPVRPIPSQLWCKNFGNKEY
BLAST of Lsi10G003960 vs. TrEMBL
Match: A0A0A0LIT8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G249800 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 4.0e-40 Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 1
BLAST of Lsi10G003960 vs. TrEMBL
Match: M5XJK6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014128mg PE=4 SV=1) HSP 1 Score: 165.6 bits (418), Expect = 2.9e-38 Identity = 78/95 (82.11%), Postives = 81/95 (85.26%), Query Frame = 1
BLAST of Lsi10G003960 vs. TrEMBL
Match: A5BV96_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0046g03680 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 1.1e-37 Identity = 75/94 (79.79%), Postives = 78/94 (82.98%), Query Frame = 1
BLAST of Lsi10G003960 vs. TrEMBL
Match: I1N3M1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G229200 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 1.0e-35 Identity = 72/93 (77.42%), Postives = 76/93 (81.72%), Query Frame = 1
BLAST of Lsi10G003960 vs. TrEMBL
Match: W9RXD8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_006549 PE=4 SV=1) HSP 1 Score: 157.1 bits (396), Expect = 1.0e-35 Identity = 76/95 (80.00%), Postives = 78/95 (82.11%), Query Frame = 1
BLAST of Lsi10G003960 vs. TAIR10
Match: AT4G00585.1 (AT4G00585.1 unknown protein) HSP 1 Score: 137.1 bits (344), Expect = 5.5e-33 Identity = 63/93 (67.74%), Postives = 71/93 (76.34%), Query Frame = 1
BLAST of Lsi10G003960 vs. NCBI nr
Match: gi|449464700|ref|XP_004150067.1| (PREDICTED: uncharacterized protein LOC101205849 [Cucumis sativus]) HSP 1 Score: 171.8 bits (434), Expect = 5.7e-40 Identity = 81/94 (86.17%), Postives = 82/94 (87.23%), Query Frame = 1
BLAST of Lsi10G003960 vs. NCBI nr
Match: gi|659122116|ref|XP_008460976.1| (PREDICTED: uncharacterized protein LOC103499701 [Cucumis melo]) HSP 1 Score: 170.2 bits (430), Expect = 1.7e-39 Identity = 79/94 (84.04%), Postives = 82/94 (87.23%), Query Frame = 1
BLAST of Lsi10G003960 vs. NCBI nr
Match: gi|596049479|ref|XP_007220499.1| (hypothetical protein PRUPE_ppa014128mg [Prunus persica]) HSP 1 Score: 165.6 bits (418), Expect = 4.1e-38 Identity = 78/95 (82.11%), Postives = 81/95 (85.26%), Query Frame = 1
BLAST of Lsi10G003960 vs. NCBI nr
Match: gi|147863419|emb|CAN83614.1| (hypothetical protein VITISV_007756 [Vitis vinifera]) HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37 Identity = 75/94 (79.79%), Postives = 78/94 (82.98%), Query Frame = 1
BLAST of Lsi10G003960 vs. NCBI nr
Match: gi|297745210|emb|CBI40290.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 163.7 bits (413), Expect = 1.6e-37 Identity = 75/94 (79.79%), Postives = 78/94 (82.98%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |