Lsi10G002190 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi10G002190
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal protein S5, putative
Locationchr10 : 3545727 .. 3547611 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAACAAAAACCAAATTGAAAGAAAAAAAAAAATCCTCTCTCTTTCTTTCCCTACTCGTATTTCCTTTACCGTGAGTTCTTCCTTCCCATCTTTGCCGCAGCCGCACGCCCCATCGGCAGCTTCCTTCTCTCCTATCAGTATCTCCATTGCTTCTCAGCGCCAACCCTCCCCATCCATTGTTTCCTATCTTTCTCTCTCTCAGCTGCTGCCGTCGCCAGCCGCCGGCACGCCACCACACCAACAACGCAATGTCGTTTTTTTGAGAAAAGAATGTGATTGAATTGAATGGTTTATACATTTTATGCATTTGAAACCGTATTGATGTGTGATTGAAGTTTATACTCAAAGAAATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGGTATGGCCATTTATGGAGAATGCCTCCATTTCCTACTTGTTTTTGTTTCTTAGCATCTGGATGGGTTTTGGTAATGCATATTGATTCAAATTTTGTAGAACTCCAAGTATAGCCAGTGGCATCCTCAAACTTTTGTTTTCCTCAAATTTTTGCTTTTTCGTTATTCGATACTTGTTGCAATAGACTAACGTGTGGGTTAAACTTTTAATAACGTTTTCTATGCATGCAACGAAATATGAACATACGTGTATTCAAATGTTGCAAGAGTCCAGCAGTTATTGATGCCATTTTTCGATCTTAACATTGGAAGATGCCTTCTCTTTCTCTCCATCGTAACCAAAAGAGAATTCATTTAACCATCTTTTTCGTTTATTTCAACATTTTGGACTTGTGTTAAAATCTGCCAACATCTCCAACATGTTTTTGACAGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA

mRNA sequence

TAAACAAAAACCAAATTGAAAGAAAAAAAAAAATCCTCTCTCTTTCTTTCCCTACTCGTATTTCCTTTACCGTGAGTTCTTCCTTCCCATCTTTGCCGCAGCCGCACGCCCCATCGGCAGCTTCCTTCTCTCCTATCAGTATCTCCATTGCTTCTCAGCGCCAACCCTCCCCATCCATTGTTTCCTATCTTTCTCTCTCTCAGCTGCTGCCGTCGCCAGCCGCCGGCACGCCACCACACCAACAACGCAATGTCGTTTTTTTGAGAAAAGAATGTGATTGAATTGAATGGTTTATACATTTTATGCATTTGAAACCGTATTGATGTGTGATTGAAGTTTATACTCAAAGAAATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA

Coding sequence (CDS)

ATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA

Protein sequence

MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRKVCYSIILFVPSTLSSSVFLWQLIVSN
BLAST of Lsi10G002190 vs. TrEMBL
Match: A0A0A0LNF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431220 PE=4 SV=1)

HSP 1 Score: 556.6 bits (1433), Expect = 2.3e-155
Identity = 290/341 (85.04%), Postives = 316/341 (92.67%), Query Frame = 1

Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQN  KTPLHISRKIS LQRFPIE+I KIS TRCYSTA +R
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNLIKTPLHISRKISGLQRFPIEKISKISLTRCYSTAHSR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VV DLLAEVEKEK+REREQR RAG+DTKDID+ED EDYMGVGPLIEKL+K+N + TGDLN
Sbjct: 61  VVHDLLAEVEKEKKREREQRIRAGLDTKDIDNEDEEDYMGVGPLIEKLDKKNSRVTGDLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+D DDERFS ESV+KRF++F++KF+RH+ELLKNFTD +NIDDAFKWMSKID
Sbjct: 121 AYEEPSDSDSDADDERFSRESVRKRFENFQKKFERHKELLKNFTDADNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           RFEQKHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKLNRAMRIVEWKEAYDPNNPANYG
Sbjct: 181 RFEQKHFQLRPEYRVIGELMNRLKVAEGKEKFMLQQKLNRAMRIVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
            IQ R+ GPS +  ++S F K+KQTI G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 AIQRRQGGPSVNLEERSEFAKQKQTIQGIDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

BLAST of Lsi10G002190 vs. TrEMBL
Match: M5X2B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004553mg PE=3 SV=1)

HSP 1 Score: 502.3 bits (1292), Expect = 5.0e-139
Identity = 262/345 (75.94%), Postives = 298/345 (86.38%), Query Frame = 1

Query: 2   VNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPK----ISATRCYSTA 61
           +NKSQAFSWSRL+LNQ + +NPTK PL  S KIS    FP    PK     S    YST 
Sbjct: 1   MNKSQAFSWSRLILNQAI-KNPTKAPLPFSGKISTSPHFPTSHAPKPSFSFSGKTHYSTV 60

Query: 62  SARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLK-DT 121
           S+R  QDLLAEVE+EKQREREQR+RAG+DTKDID ED EDY+GV PLIEKL+K+ LK DT
Sbjct: 61  SSRAAQDLLAEVEREKQREREQRKRAGLDTKDIDQEDEEDYLGVIPLIEKLDKEKLKGDT 120

Query: 122 GDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWM 181
           GDLN YEEPTDSD+DEDDERF+P++VKKRFD+F++KF RHEELLKNFT+   +DDAFKWM
Sbjct: 121 GDLNLYEEPTDSDSDEDDERFTPDAVKKRFDEFQKKFTRHEELLKNFTEAGTLDDAFKWM 180

Query: 182 SKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNP 241
           +KID+FEQKHFRLRPEYRVIGEL+NRLKVAEGK+KFILQQKLNRAMR+V+WKEA+DPNNP
Sbjct: 181 NKIDKFEQKHFRLRPEYRVIGELINRLKVAEGKDKFILQQKLNRAMRLVQWKEAFDPNNP 240

Query: 242 ANYGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDK 301
           ANYGVIQH +V  S D ++ +GFEKEKQ I G DDDD+EEF+DMKE+D+ILLEKLNAIDK
Sbjct: 241 ANYGVIQHEQVDSSVDLLEHAGFEKEKQIIQGVDDDDDEEFNDMKEKDDILLEKLNAIDK 300

Query: 302 KLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLEEKLAELDHTFGKKGKVLEEEIRDLAEERN +TEKKR PLYRK
Sbjct: 301 KLEEKLAELDHTFGKKGKVLEEEIRDLAEERNDVTEKKRRPLYRK 344

BLAST of Lsi10G002190 vs. TrEMBL
Match: A0A067E9Y6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013474mg PE=4 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 9.2e-125
Identity = 253/387 (65.37%), Postives = 290/387 (74.94%), Query Frame = 1

Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRF-------------------- 60
           M NK++ FSWSRLLLNQ + +NPTKTPL  SRKIS    F                    
Sbjct: 1   MTNKTRPFSWSRLLLNQNL-KNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNAS 60

Query: 61  ------PIEEI-----------------PKISATRCYSTASA--RVVQDLLAEVEKEKQR 120
                 PI                    P I     +ST SA  RV QDLLAEVE+EK R
Sbjct: 61  QEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEVEREKGR 120

Query: 121 EREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDE 180
           ERE R+R G+DTKDID ED EDYMGVGPLIEKLEK+ LKDTGDLN YEEPTDSD+DEDDE
Sbjct: 121 EREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTDSDSDEDDE 180

Query: 181 RFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRV 240
           RFS ++V KRF  F++KFKRH+ELL+NFT+ E  D+AFKWM+KID+FEQKHF LR EYRV
Sbjct: 181 RFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRV 240

Query: 241 IGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMD 300
           IGELMNRLK AEGK+KF+LQQKLNRAMR+VEWKE YDPNNP NYGVI+H + GP+ D ++
Sbjct: 241 IGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVE 300

Query: 301 QSGFEKEKQTIL-GADDDDEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGK 342
            +  ++EK+ +  G DDDDEEEFDDMKERD+ILLE+LNAIDKKLEEKLAELDHTFGKKGK
Sbjct: 301 NAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGK 360

BLAST of Lsi10G002190 vs. TrEMBL
Match: V4VE22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031158mg PE=3 SV=1)

HSP 1 Score: 454.9 bits (1169), Expect = 9.2e-125
Identity = 253/387 (65.37%), Postives = 290/387 (74.94%), Query Frame = 1

Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRF-------------------- 60
           M NK++ FSWSRLLLNQ + +NPTKTPL  SRKIS    F                    
Sbjct: 1   MTNKTRPFSWSRLLLNQNL-KNPTKTPLSFSRKISTFPHFLTNQTPPNPLPPRTHFPNAS 60

Query: 61  ------PIEEI-----------------PKISATRCYSTASA--RVVQDLLAEVEKEKQR 120
                 PI                    P I     +ST SA  RV QDLLAEVE+EK R
Sbjct: 61  QEYSAKPIYSFSRKISTFSHFRYNQTSKPSILLKSHFSTGSAYSRVAQDLLAEVEREKGR 120

Query: 121 EREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDE 180
           ERE R+R G+DTKDID ED EDYMGVGPLIEKLEK+ LKDTGDLN YEEPTDSD+DEDDE
Sbjct: 121 EREARKRQGLDTKDIDQEDEEDYMGVGPLIEKLEKERLKDTGDLNLYEEPTDSDSDEDDE 180

Query: 181 RFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRV 240
           RFS ++V KRF  F++KFKRH+ELL+NFT+ E  D+AFKWM+KID+FEQKHF LR EYRV
Sbjct: 181 RFSRDAVNKRFQVFQKKFKRHKELLQNFTEAETPDEAFKWMNKIDKFEQKHFPLRHEYRV 240

Query: 241 IGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMD 300
           IGELMNRLK AEGK+KF+LQQKLNRAMR+VEWKE YDPNNP NYGVI+H + GP+ D ++
Sbjct: 241 IGELMNRLKEAEGKDKFMLQQKLNRAMRLVEWKEVYDPNNPTNYGVIRHEQAGPNVDAVE 300

Query: 301 QSGFEKEKQTIL-GADDDDEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGK 342
            +  ++EK+ +  G DDDDEEEFDDMKERD+ILLE+LNAIDKKLEEKLAELDHTFGKKGK
Sbjct: 301 NAEMDEEKRLLQGGVDDDDEEEFDDMKERDDILLERLNAIDKKLEEKLAELDHTFGKKGK 360

BLAST of Lsi10G002190 vs. TrEMBL
Match: F6H502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=1)

HSP 1 Score: 448.7 bits (1153), Expect = 6.6e-123
Identity = 243/348 (69.83%), Postives = 286/348 (82.18%), Query Frame = 1

Query: 1   MVNKSQAF--SWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKI---SATRCYS 60
           M  KSQA   S SRL+ ++++ + P   PL      S    FP  + P       +R +S
Sbjct: 1   MAIKSQAAASSISRLIFSKIIFKKPPIKPL------STFPHFPTAQTPHFPFPGTSRFFS 60

Query: 61  TASARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKD 120
             SAR VQ+LLAEVE+EKQRE+EQR+RAG+D K+I+DED EDYMGVGPLIEKLEK+ LK 
Sbjct: 61  --SARTVQELLAEVEREKQREKEQRKRAGLDVKEIEDEDEEDYMGVGPLIEKLEKEKLKS 120

Query: 121 TGDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKW 180
           +GDLN YEE TDSD+DEDDERF+ E+VKKR + FE+KFKRH ELL NF + E +DDAFKW
Sbjct: 121 SGDLNMYEERTDSDSDEDDERFTTEAVKKRAEVFEKKFKRHGELLNNFAEAETLDDAFKW 180

Query: 181 MSKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNN 240
           M++ID+FEQKH +LRPEYRVIGELMNRLK AEGK+KFILQQKLNRA+R++EWKEAYDPNN
Sbjct: 181 MTRIDKFEQKHLQLRPEYRVIGELMNRLKEAEGKDKFILQQKLNRAVRLIEWKEAYDPNN 240

Query: 241 PANYGVIQHRKVGPSADPMDQSGFEKEKQTILGA--DDDDEEEFDDMKERDNILLEKLNA 300
           PANYG IQH++VGP+ D ++ +GFEKEKQ I GA  D+DD+ EFDDMKERD+ILLEKLNA
Sbjct: 241 PANYGYIQHQQVGPNVDLLEHAGFEKEKQMIQGAEMDEDDDGEFDDMKERDDILLEKLNA 300

Query: 301 IDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           IDKKLEEKLAELDHTFGKKGK+LEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 IDKKLEEKLAELDHTFGKKGKLLEEEIRDLAEERNSLTEKKRRPLYRK 340

BLAST of Lsi10G002190 vs. TAIR10
Match: AT1G64880.1 (AT1G64880.1 Ribosomal protein S5 family protein)

HSP 1 Score: 371.3 bits (952), Expect = 6.8e-103
Identity = 215/369 (58.27%), Postives = 269/369 (72.90%), Query Frame = 1

Query: 4   KSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQR-----------------FPIEEIP 63
           +++A SW RLLL +    NP  +    SR+IS L                   FP+ + P
Sbjct: 4   RTRASSWPRLLLRR----NPRSS---FSRQISTLDSSTSTFPRRISGYYSSSFFPVNQTP 63

Query: 64  KISATRCYSTASA--------RVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDY 123
            IS+ R    +S+        RVV++L+AEVEKEKQRERE+R+R G+D KDID ED EDY
Sbjct: 64  WISSQRYRFFSSSTMSPSEADRVVRELIAEVEKEKQREREERQRQGLDYKDIDAEDEEDY 123

Query: 124 MGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEE 183
           +G+ P IEKL+KQNLKD G+LN  EE +DSD++ D+     E  +K+ D F +KF+RH+E
Sbjct: 124 LGIEPFIEKLKKQNLKDDGELNRREESSDSDSEYDEIDLDEE--RKKEDIFNKKFQRHKE 183

Query: 184 LLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKL 243
           LL+  T +E +D+AF+WM+K+D+FE+KHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKL
Sbjct: 184 LLQTLTKSETLDEAFRWMNKLDKFEEKHFKLRPEYRVIGELMNRLKVAEGKEKFVLQQKL 243

Query: 244 NRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMDQSGFEKEKQTILGA------DDD 303
           NRAMR+VEWKEA+DPNNPANYGVI+        D +   G E+E++ +         DDD
Sbjct: 244 NRAMRLVEWKEAFDPNNPANYGVIER-------DNVQGGGEEREERLVADGPKDDNDDDD 303

Query: 304 DEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTE 342
           DEEEFDDMKERD+ILLEKLNAIDKKLE KL+ELDHTFGKKGK LEEEIR+LAE+RN+LTE
Sbjct: 304 DEEEFDDMKERDDILLEKLNAIDKKLEIKLSELDHTFGKKGKRLEEEIRELAEDRNALTE 356

BLAST of Lsi10G002190 vs. NCBI nr
Match: gi|659125644|ref|XP_008462792.1| (PREDICTED: RNA-binding protein 25 [Cucumis melo])

HSP 1 Score: 558.5 bits (1438), Expect = 8.5e-156
Identity = 290/341 (85.04%), Postives = 315/341 (92.38%), Query Frame = 1

Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQN  KTPLHISRKISCLQR PI++I KIS TRCYSTA +R
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNLIKTPLHISRKISCLQRLPIDKISKISLTRCYSTAHSR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VV DLLAEVEKEK+RERE R RAG+DTKDID+ED EDYMGVGPLIEKL+K+N + TGDLN
Sbjct: 61  VVHDLLAEVEKEKKREREMRIRAGLDTKDIDNEDEEDYMGVGPLIEKLDKKNSRVTGDLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+DEDDERFS ESV+KRF +F+RKF+RH+ELLKNFTD +NIDDAFKWMSKID
Sbjct: 121 AYEEPSDSDSDEDDERFSTESVRKRFQNFQRKFERHKELLKNFTDADNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           RFEQKHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKLNRAMRIVEWKEAYDPN+PANYG
Sbjct: 181 RFEQKHFQLRPEYRVIGELMNRLKVAEGKEKFMLQQKLNRAMRIVEWKEAYDPNDPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
            IQ R+ GPS +  +QS F K+KQTI G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 AIQRRQGGPSVNLEEQSEFAKQKQTIQGIDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

BLAST of Lsi10G002190 vs. NCBI nr
Match: gi|449468275|ref|XP_004151847.1| (PREDICTED: probable 37S ribosomal protein S5, mitochondrial [Cucumis sativus])

HSP 1 Score: 556.6 bits (1433), Expect = 3.2e-155
Identity = 290/341 (85.04%), Postives = 316/341 (92.67%), Query Frame = 1

Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQN  KTPLHISRKIS LQRFPIE+I KIS TRCYSTA +R
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNLIKTPLHISRKISGLQRFPIEKISKISLTRCYSTAHSR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VV DLLAEVEKEK+REREQR RAG+DTKDID+ED EDYMGVGPLIEKL+K+N + TGDLN
Sbjct: 61  VVHDLLAEVEKEKKREREQRIRAGLDTKDIDNEDEEDYMGVGPLIEKLDKKNSRVTGDLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+D DDERFS ESV+KRF++F++KF+RH+ELLKNFTD +NIDDAFKWMSKID
Sbjct: 121 AYEEPSDSDSDADDERFSRESVRKRFENFQKKFERHKELLKNFTDADNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           RFEQKHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKLNRAMRIVEWKEAYDPNNPANYG
Sbjct: 181 RFEQKHFQLRPEYRVIGELMNRLKVAEGKEKFMLQQKLNRAMRIVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
            IQ R+ GPS +  ++S F K+KQTI G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 AIQRRQGGPSVNLEERSEFAKQKQTIQGIDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

BLAST of Lsi10G002190 vs. NCBI nr
Match: gi|700208234|gb|KGN63353.1| (hypothetical protein Csa_2G431220 [Cucumis sativus])

HSP 1 Score: 556.6 bits (1433), Expect = 3.2e-155
Identity = 290/341 (85.04%), Postives = 316/341 (92.67%), Query Frame = 1

Query: 1   MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASAR 60
           MVNKSQAFSWSRLLLNQVVHQN  KTPLHISRKIS LQRFPIE+I KIS TRCYSTA +R
Sbjct: 1   MVNKSQAFSWSRLLLNQVVHQNLIKTPLHISRKISGLQRFPIEKISKISLTRCYSTAHSR 60

Query: 61  VVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLN 120
           VV DLLAEVEKEK+REREQR RAG+DTKDID+ED EDYMGVGPLIEKL+K+N + TGDLN
Sbjct: 61  VVHDLLAEVEKEKKREREQRIRAGLDTKDIDNEDEEDYMGVGPLIEKLDKKNSRVTGDLN 120

Query: 121 AYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKID 180
           AYEEP+DSD+D DDERFS ESV+KRF++F++KF+RH+ELLKNFTD +NIDDAFKWMSKID
Sbjct: 121 AYEEPSDSDSDADDERFSRESVRKRFENFQKKFERHKELLKNFTDADNIDDAFKWMSKID 180

Query: 181 RFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYG 240
           RFEQKHF+LRPEYRVIGELMNRLKVAEGKEKF+LQQKLNRAMRIVEWKEAYDPNNPANYG
Sbjct: 181 RFEQKHFQLRPEYRVIGELMNRLKVAEGKEKFMLQQKLNRAMRIVEWKEAYDPNNPANYG 240

Query: 241 VIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEE 300
            IQ R+ GPS +  ++S F K+KQTI G DDDDEEEFDDMKERD+ILLEKLNAIDKKLEE
Sbjct: 241 AIQRRQGGPSVNLEERSEFAKQKQTIQGIDDDDEEEFDDMKERDDILLEKLNAIDKKLEE 300

Query: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKR PLYRK
Sbjct: 301 KLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRRPLYRK 341

BLAST of Lsi10G002190 vs. NCBI nr
Match: gi|694363868|ref|XP_009361122.1| (PREDICTED: uncharacterized protein LOC103951474 [Pyrus x bretschneideri])

HSP 1 Score: 507.7 bits (1306), Expect = 1.7e-140
Identity = 264/343 (76.97%), Postives = 299/343 (87.17%), Query Frame = 1

Query: 2   VNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPK---ISATRCYSTAS 61
           ++KSQ FSWSRL++ Q + +NP+K PL +SRKIS    FP    P     S+   YST S
Sbjct: 1   MSKSQGFSWSRLIVKQGI-KNPSKAPLPLSRKISTRPHFPATPQPPKWPFSSKIPYSTVS 60

Query: 62  ARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGD 121
           +R  QDLLAEVE+EKQREREQR+RAG+DTKDID ED EDYMGV PLIEKLEK+ LKDTGD
Sbjct: 61  SRAAQDLLAEVEREKQREREQRKRAGLDTKDIDREDEEDYMGVMPLIEKLEKEKLKDTGD 120

Query: 122 LNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSK 181
           LN YEEPTDSD+DEDDERF+P++VKKRFD+F+RKF RHEELL NFT+ E +DDA+KWM+K
Sbjct: 121 LNLYEEPTDSDSDEDDERFTPDAVKKRFDEFQRKFTRHEELLNNFTEAETLDDAYKWMNK 180

Query: 182 IDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPAN 241
           ID+FEQKHFRLRPEYRVIGELMNRLKVAEGK+KFILQQKLNRAMR+V+WKEAYDPNNPAN
Sbjct: 181 IDKFEQKHFRLRPEYRVIGELMNRLKVAEGKDKFILQQKLNRAMRLVQWKEAYDPNNPAN 240

Query: 242 YGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKL 301
           YGVIQH +V PS D ++ +GFEKEKQ I G DDDDEEEF+DMKE+D+ILLEKLNAIDKKL
Sbjct: 241 YGVIQHEQVEPSVDLLEHAGFEKEKQIIQGVDDDDEEEFNDMKEKDDILLEKLNAIDKKL 300

Query: 302 EEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           EEKLAELDHTFGKKGKVLEEEIRDLAEERN LTEKKR PLYRK
Sbjct: 301 EEKLAELDHTFGKKGKVLEEEIRDLAEERNDLTEKKRRPLYRK 342

BLAST of Lsi10G002190 vs. NCBI nr
Match: gi|596021703|ref|XP_007219033.1| (hypothetical protein PRUPE_ppa004553mg [Prunus persica])

HSP 1 Score: 502.3 bits (1292), Expect = 7.2e-139
Identity = 262/345 (75.94%), Postives = 298/345 (86.38%), Query Frame = 1

Query: 2   VNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPK----ISATRCYSTA 61
           +NKSQAFSWSRL+LNQ + +NPTK PL  S KIS    FP    PK     S    YST 
Sbjct: 1   MNKSQAFSWSRLILNQAI-KNPTKAPLPFSGKISTSPHFPTSHAPKPSFSFSGKTHYSTV 60

Query: 62  SARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLK-DT 121
           S+R  QDLLAEVE+EKQREREQR+RAG+DTKDID ED EDY+GV PLIEKL+K+ LK DT
Sbjct: 61  SSRAAQDLLAEVEREKQREREQRKRAGLDTKDIDQEDEEDYLGVIPLIEKLDKEKLKGDT 120

Query: 122 GDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWM 181
           GDLN YEEPTDSD+DEDDERF+P++VKKRFD+F++KF RHEELLKNFT+   +DDAFKWM
Sbjct: 121 GDLNLYEEPTDSDSDEDDERFTPDAVKKRFDEFQKKFTRHEELLKNFTEAGTLDDAFKWM 180

Query: 182 SKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNP 241
           +KID+FEQKHFRLRPEYRVIGEL+NRLKVAEGK+KFILQQKLNRAMR+V+WKEA+DPNNP
Sbjct: 181 NKIDKFEQKHFRLRPEYRVIGELINRLKVAEGKDKFILQQKLNRAMRLVQWKEAFDPNNP 240

Query: 242 ANYGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDK 301
           ANYGVIQH +V  S D ++ +GFEKEKQ I G DDDD+EEF+DMKE+D+ILLEKLNAIDK
Sbjct: 241 ANYGVIQHEQVDSSVDLLEHAGFEKEKQIIQGVDDDDDEEFNDMKEKDDILLEKLNAIDK 300

Query: 302 KLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRK 342
           KLEEKLAELDHTFGKKGKVLEEEIRDLAEERN +TEKKR PLYRK
Sbjct: 301 KLEEKLAELDHTFGKKGKVLEEEIRDLAEERNDVTEKKRRPLYRK 344

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LNF1_CUCSA2.3e-15585.04Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431220 PE=4 SV=1[more]
M5X2B8_PRUPE5.0e-13975.94Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004553mg PE=3 SV=1[more]
A0A067E9Y6_CITSI9.2e-12565.37Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013474mg PE=4 SV=1[more]
V4VE22_9ROSI9.2e-12565.37Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031158mg PE=3 SV=1[more]
F6H502_VITVI6.6e-12369.83Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT1G64880.16.8e-10358.27 Ribosomal protein S5 family protein[more]
Match NameE-valueIdentityDescription
gi|659125644|ref|XP_008462792.1|8.5e-15685.04PREDICTED: RNA-binding protein 25 [Cucumis melo][more]
gi|449468275|ref|XP_004151847.1|3.2e-15585.04PREDICTED: probable 37S ribosomal protein S5, mitochondrial [Cucumis sativus][more]
gi|700208234|gb|KGN63353.1|3.2e-15585.04hypothetical protein Csa_2G431220 [Cucumis sativus][more]
gi|694363868|ref|XP_009361122.1|1.7e-14076.97PREDICTED: uncharacterized protein LOC103951474 [Pyrus x bretschneideri][more]
gi|596021703|ref|XP_007219033.1|7.2e-13975.94hypothetical protein PRUPE_ppa004553mg [Prunus persica][more]
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR000851Ribosomal_S5
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005768 endosome
cellular_component GO:0005763 mitochondrial small ribosomal subunit
cellular_component GO:0005802 trans-Golgi network
cellular_component GO:0005840 ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G002190.1Lsi10G002190.1mRNA


Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000851Ribosomal protein S5PANTHERPTHR13718RIBOSOMAL S SUBUNITcoord: 1..341
score: 1.4E
NoneNo IPR availableunknownCoilCoilcoord: 313..336
score: -coord: 288..308
score: -coord: 59..86
scor
NoneNo IPR availablePANTHERPTHR13718:SF63SUBFAMILY NOT NAMEDcoord: 1..341
score: 1.4E