Lsi10G002190.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.TAAACAAAAACCAAATTGAAAGAAAAAAAAAAATCCTCTCTCTTTCTTTCCCTACTCGTATTTCCTTTACCGTGAGTTCTTCCTTCCCATCTTTGCCGCAGCCGCACGCCCCATCGGCAGCTTCCTTCTCTCCTATCAGTATCTCCATTGCTTCTCAGCGCCAACCCTCCCCATCCATTGTTTCCTATCTTTCTCTCTCTCAGCTGCTGCCGTCGCCAGCCGCCGGCACGCCACCACACCAACAACGCAATGTCGTTTTTTTGAGAAAAGAATGTGATTGAATTGAATGGTTTATACATTTTATGCATTTGAAACCGTATTGATGTGTGATTGAAGTTTATACTCAAAGAAATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGGTATGGCCATTTATGGAGAATGCCTCCATTTCCTACTTGTTTTTGTTTCTTAGCATCTGGATGGGTTTTGGTAATGCATATTGATTCAAATTTTGTAGAACTCCAAGTATAGCCAGTGGCATCCTCAAACTTTTGTTTTCCTCAAATTTTTGCTTTTTCGTTATTCGATACTTGTTGCAATAGACTAACGTGTGGGTTAAACTTTTAATAACGTTTTCTATGCATGCAACGAAATATGAACATACGTGTATTCAAATGTTGCAAGAGTCCAGCAGTTATTGATGCCATTTTTCGATCTTAACATTGGAAGATGCCTTCTCTTTCTCTCCATCGTAACCAAAAGAGAATTCATTTAACCATCTTTTTCGTTTATTTCAACATTTTGGACTTGTGTTAAAATCTGCCAACATCTCCAACATGTTTTTGACAGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA TAAACAAAAACCAAATTGAAAGAAAAAAAAAAATCCTCTCTCTTTCTTTCCCTACTCGTATTTCCTTTACCGTGAGTTCTTCCTTCCCATCTTTGCCGCAGCCGCACGCCCCATCGGCAGCTTCCTTCTCTCCTATCAGTATCTCCATTGCTTCTCAGCGCCAACCCTCCCCATCCATTGTTTCCTATCTTTCTCTCTCTCAGCTGCTGCCGTCGCCAGCCGCCGGCACGCCACCACACCAACAACGCAATGTCGTTTTTTTGAGAAAAGAATGTGATTGAATTGAATGGTTTATACATTTTATGCATTTGAAACCGTATTGATGTGTGATTGAAGTTTATACTCAAAGAAATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA ATGGTGAACAAGTCGCAAGCATTTTCTTGGTCGCGTCTCCTTCTCAATCAGGTCGTTCACCAAAACCCCACTAAAACCCCACTTCATATTTCCCGGAAAATCTCCTGTCTCCAACGCTTCCCGATTGAGGAAATTCCGAAGATTTCAGCGACGCGGTGTTACTCCACTGCTTCAGCTAGAGTTGTGCAAGATCTTCTCGCTGAGGTGGAGAAGGAGAAGCAGAGAGAAAGGGAGCAGAGGAGAAGGGCTGGTATTGATACCAAGGATATTGACGATGAAGATGGAGAGGATTATATGGGTGTTGGGCCATTGATAGAGAAGCTCGAGAAGCAAAATTTAAAGGACACTGGGGACTTGAACGCCTATGAAGAGCCCACTGATTCTGATAATGATGAAGACGATGAAAGGTTTAGTCCTGAATCCGTCAAAAAGAGGTTTGATGATTTTGAGAGGAAATTCAAAAGACACGAGGAATTGCTGAAGAACTTCACTGACACTGAAAACATCGATGATGCTTTCAAATGGATGAGTAAAATCGACAGGTTTGAGCAAAAACACTTCCGGCTTCGCCCTGAATATCGGGTAATTGGTGAATTAATGAACCGCTTGAAAGTCGCAGAGGGCAAGGAAAAGTTCATTCTTCAGCAAAAGTTAAATAGGGCTATGAGAATAGTGGAGTGGAAGGAAGCTTATGACCCAAATAATCCTGCCAACTATGGAGTTATTCAACACAGAAAAGTAGGTCCATCAGCTGATCCCATGGATCAATCAGGATTTGAAAAAGAGAAGCAAACCATACTAGGGGCTGATGATGATGATGAGGAAGAGTTTGATGACATGAAAGAAAGGGATAATATACTACTGGAGAAGCTTAATGCTATAGATAAGAAACTCGAAGAGAAGCTAGCAGAGCTGGATCATACCTTTGGAAAGAAAGGAAAGGTTCTAGAAGAAGAAATCCGAGATCTTGCAGAGGAGAGAAATTCTTTAACTGAGAAGAAGAGAACACCTCTTTATCGAAAAGTATGTTACTCCATCATCTTGTTTGTGCCTTCTACTTTGTCGTCTTCTGTCTTCTTGTGGCAGTTGATAGTTTCCAACTAA MVNKSQAFSWSRLLLNQVVHQNPTKTPLHISRKISCLQRFPIEEIPKISATRCYSTASARVVQDLLAEVEKEKQREREQRRRAGIDTKDIDDEDGEDYMGVGPLIEKLEKQNLKDTGDLNAYEEPTDSDNDEDDERFSPESVKKRFDDFERKFKRHEELLKNFTDTENIDDAFKWMSKIDRFEQKHFRLRPEYRVIGELMNRLKVAEGKEKFILQQKLNRAMRIVEWKEAYDPNNPANYGVIQHRKVGPSADPMDQSGFEKEKQTILGADDDDEEEFDDMKERDNILLEKLNAIDKKLEEKLAELDHTFGKKGKVLEEEIRDLAEERNSLTEKKRTPLYRKVCYSIILFVPSTLSSSVFLWQLIVSN
BLAST of Lsi10G002190.1 vs. TrEMBL
Match: A0A0A0LNF1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G431220 PE=4 SV=1) HSP 1 Score: 556.6 bits (1433), Expect = 2.3e-155 Identity = 290/341 (85.04%), Postives = 316/341 (92.67%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. TrEMBL
Match: M5X2B8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004553mg PE=3 SV=1) HSP 1 Score: 502.3 bits (1292), Expect = 5.0e-139 Identity = 262/345 (75.94%), Postives = 298/345 (86.38%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. TrEMBL
Match: A0A067E9Y6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013474mg PE=4 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 9.2e-125 Identity = 253/387 (65.37%), Postives = 290/387 (74.94%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. TrEMBL
Match: V4VE22_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10031158mg PE=3 SV=1) HSP 1 Score: 454.9 bits (1169), Expect = 9.2e-125 Identity = 253/387 (65.37%), Postives = 290/387 (74.94%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. TrEMBL
Match: F6H502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0028g02100 PE=3 SV=1) HSP 1 Score: 448.7 bits (1153), Expect = 6.6e-123 Identity = 243/348 (69.83%), Postives = 286/348 (82.18%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. TAIR10
Match: AT1G64880.1 (AT1G64880.1 Ribosomal protein S5 family protein) HSP 1 Score: 371.3 bits (952), Expect = 6.8e-103 Identity = 215/369 (58.27%), Postives = 269/369 (72.90%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. NCBI nr
Match: gi|659125644|ref|XP_008462792.1| (PREDICTED: RNA-binding protein 25 [Cucumis melo]) HSP 1 Score: 558.5 bits (1438), Expect = 8.5e-156 Identity = 290/341 (85.04%), Postives = 315/341 (92.38%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. NCBI nr
Match: gi|449468275|ref|XP_004151847.1| (PREDICTED: probable 37S ribosomal protein S5, mitochondrial [Cucumis sativus]) HSP 1 Score: 556.6 bits (1433), Expect = 3.2e-155 Identity = 290/341 (85.04%), Postives = 316/341 (92.67%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. NCBI nr
Match: gi|700208234|gb|KGN63353.1| (hypothetical protein Csa_2G431220 [Cucumis sativus]) HSP 1 Score: 556.6 bits (1433), Expect = 3.2e-155 Identity = 290/341 (85.04%), Postives = 316/341 (92.67%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. NCBI nr
Match: gi|694363868|ref|XP_009361122.1| (PREDICTED: uncharacterized protein LOC103951474 [Pyrus x bretschneideri]) HSP 1 Score: 507.7 bits (1306), Expect = 1.7e-140 Identity = 264/343 (76.97%), Postives = 299/343 (87.17%), Query Frame = 1
BLAST of Lsi10G002190.1 vs. NCBI nr
Match: gi|596021703|ref|XP_007219033.1| (hypothetical protein PRUPE_ppa004553mg [Prunus persica]) HSP 1 Score: 502.3 bits (1292), Expect = 7.2e-139 Identity = 262/345 (75.94%), Postives = 298/345 (86.38%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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