Lsi09G018000 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G018000
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cytochrome oxidase complex assembly protein
Location	chr09 : 26744607 .. 26748970 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATACAAGACACGTATCATGAAATTAAAGACAAATGACTTTATTTTATTGAGGAAGCGCTGAGCGATAGAAGGAGCAAGGAACCCCAAAGCTGAAAATGCTGGCGAAAAGGTTCGTTTCCATGTTCAAGCGCTCTCCAAATCCACGGTCTTCCAGGTGCGCCCTTTTTGTAATCCCCATTTTCGCTTTTTTTCTGCTTTTTATTCACGCTTCCATTTATCGGAATTTTACACCAACAGTTACTAATTCACCCATGAACTTCAGCTGAACATGGAATCAATCGATTGCCCGCCTTTTTTGGAAGAGATATAATATCTAGGTTCTTCAATTTTTGCCTGTTTTGATCGTATAACAGGCTTAATTTCCACCTTTATGCTCGTTTAGAACTTGGAACTGTTTTATTTGTTGTTTTCTATGAAAAAGGAAACGCTGGACCTGATTTTTACAAATTTTTTTCATTGATTCTAAATGGATAGAGTGGAACTTGGTGATCTCTGATTAAGAGTTGCTTGCAGCAGTTCCATAAAGCCATCGGAGGATGGGGTGAATAAATGGGGTCGGAAAGCAGTCTCTTTTGTACTTATTACTGTTACTGGTGGTGTAGCTTTGAGTGCTTTAGATGACCTTGCCATTTATCATAGCTGTAGCAGGTATGTACGACTTGTTACAGATTTTCAATTTTGGATGAATTATATCGTTAAAGCAAATGAAAGTCTGAATTTGGCGGAAATAAACTCATGTATCTTGGGATTTTTCTTTATGCAAGTGTTTGCTGCCTTGTTTCACTTATTAGTGTTTTGAAGTTCAAGGAAATTAGTGTAGTAGGATTATGGTAAATTGGGTTATCTTTGTTAACTACTTGATTAATTAGGGTTAGGGTTAGTTTGTTTTTCAATTATCTATGTATGGAGAATTGTCCTCTTATATTCATAACTCTTGATTCATTATAAGCATTTAACTGATTCTGGGAGAGAATTCTCCTTTTAATCACTTAGGCTACATCTGAAACTCTCACAATTGCTATGTTGTTTTCAACCTTTAAAATGGGCTATGATTTTACATTACTCAGGTGAGTCAGGTCATTGTATTTTTGGAACCAAGCCTTATCACTTCAGATGGACTAATGAATTGGATTGAATAATATCTTATATTAGTATTCAGTGATGTTTACATTATTGTTACCGAAAGAGTTCAGTTGTCAACCTTGGGGATAAGAGAATGAAAGAATTCATTGTCTTTGGGTTTCTTTTACCTATACATTCTTTGCTTGGTCTGTTTCTGTTGGGAGGCTTTAGATCTTTGTTATTGCCCCAGTTACTCAGGTACAATACTCTTTTTTGGATGAAATCGTGCAAATAGATGATAGATCTTCTAGGGCTTTACTTGGATGCATTTTTTTTTATTCCACGAATACTCAACACACCCTTTTCTTTTTTGGCTTGATGTATCTATTAGATGACTGAGATCACCATTTGCAATAAGTTAGCCACCTTGTTACAATTAAGACGAAGCCCTTTAGTATTTGATCAATGGTTTTTTGAAATAAATAGGAATGACTTAGAACCAACTGAACTAGGACTAATTTTCCTTATTGAGAAATCAAAGCTTCCCCAATTTTTTGGCTCTTATCTTGATTGTCTTTGAACCTGGATTCCAAACAATTTTCTTCTTTGGGTATACCTCCAAAAGGAAGACCAAGGTGTTTGAGATGCTCTAATAACAAAAGTGAAATATTCAGGAATAGAAGCTAGTTCTAATCTGATATGAGTTGTAAAAATTGGATTAATTGTAGCCTATGGTTGATCCCAACTACAAAAAAGTGTTACGGAGGTTGACTTTTAAACCTGATGCCTCTTTGATTTTAGCCTTAAGGAAGGAAGATAATTGCAAAGTGGCTATTAACAAACTGTTAGTGGTTGATGTTCCTTTTCCTAATACACACAGAAAATCTACCATGCCATTTTTATCCAAAGATTTAGTCAACAATCTACTTTGGTAGTCATAGTCTACTTCTAACAAAAATTAAAAAGAAGAGACCTCATCTTGACGAAGTTGCCTAGAAGCAAGAATTAGCCTGTTGGCTTATCATTCAATACTCAAAAGCATTGAAAAGCTTAGAGAAGAAGACAGACTTTGATCCACACTGTATTTCCTACCAAATATTTAGAGCTACATATATAAGTCCCAATTCACAAGATTATTGTCCTTCCTTTTAGTGGATAACCGAGCTTGTATAATGAGAGAATACGGAAGGGCATACAAAAAGACAACCCGACAAAAGGAGCCAAACTATAACCTGACGAACTATACAACAAAGGGCAGGCTCCGCCAATGCAAAAGGATAATTCTAATTCAATTTCATATGTGTGTGTTCAGATAGATAGATAGATAGATTTAACATCTCGTTTCACGTTATGCTTGCATCTTGCATTGTGCCTTAAATACATTTGTTAAGAACCAGTGCTTTGTAATACTTCTGAAAAAGAAATTGTCTGATAATTCTCTTTAATAAAAGAAGGAACCAAACTTTGGTTCTCATGGACCTTTTCGTCACATGTGTGAAAGCTTTTAGGAATGGGAAGCTAGGGTTCTCATGATTTTCTTTTGCAGCTGCTTGCTCAAATTGACTTATTTTATCTTGTTACTTTTCTCAGCAAAGCCATAGAGAAAGCCAGAAACAATCAAGCAGTTATAGATGCTATTGGAGAACCCATTGCTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCAGTATCAGGACCACAAGGCACAGGGATCCTCCAACTGAAGGCAGTTCGTAATGGAGGTTGATATACTTTTCCTGTATTTTGTTTTGTTGATTCAAGTTTTGATCTTATGTGATATCTTCTATTTGATTTATCTCATTGCATTATATAATAAATGATATTATGCATGGGAACTCCATTAGAAAAAAAATTATACACAGAAATCCTCTTGTAGAATTGGGCGTAAATCTTGTTCCTAAAAGAAAATCCTTTTTTTTTTTGTTTGGGGGGGGGGCGTTAAGAAACCAAGTTTTTTTTTTTTCCTTTTCAAAGTTCTCTTCATCTGTAATTAAGTGGATCAATCACCATTTCTGGGACTTAGTTATGCTGTCTGCTTTCTTAAATGTTTATTTACTGCAACTTTTTGGAGTTGAAGGATGGGTTGACAGTTGTGAAAATTGTGTTTAGCCATCCATCTTAGCTGCCGTAACTTCAATCTGAATTATTTGGAAAATGCTATACATTGAACTTTTTTAGATAAAATTGGAAGATTCTGAAGGTATTTGGTAGGTATAGAATTTTCTTCTATAGGTAATATTCTTTAAATTTTCAAACCATGGTTGGCAGATTTAATTTCTTATGCCTTACATCCATGCATATCAATTCTTTAGATTTTACTTTTGCATCAATATATTCAAAATGGAATCTTGTTCTATTTTGTTTTGTTTTTTCTTTTTTTTTTTACATGAATTATCATCCTCTGTCAACTTTTTATTCTCTTGTCAACTTTTCTTTTCTTCTTTTTATATATGTTTTGAATGGTAATACTAAGTTGGAATATCTCAACAGAGGATTCCTGGATTTCTTTTCTCCGGCCTCGAGACTGGGACATTCTGATCATGGATGCTCTCCTTCATGTTCCTGCAAACGAAGGTAAGCAGAAAACATTGCGTATTAACCTCACTGAGAAGTTTGCCCCCGCTGCTTGTGTCTCATGCACTGACTGTCAGCCTCCAGAGACAGAGAAGAGATGAAGTCAGCTTGTAAGGTTATTGAGAAACTATTGTCAAAAGTTAGCAGTTTCTATCAGGTTTCTGTCCCGACATGATTTTGAGCTAACCGAAGGATCAAAGTATTCGTTATCCACACCAAAATAATATTTTCTTTGAGGTTGAGTTCAAACTATGGTGGAATCAGTTTAGAAGATTTATTATTATACAACTTTGCTGACATCAAATGTGGCAAAGTTATATGGTTCTCCTGTAAAACCCAAGTTATAAAAGAAATAATAGTAGTTATTCACTTGATTTTTGTTCTTATTTGTTTGTTTGGGTAGGGGGTGGGGGTCGTGTTCTACAGATGTTGCCATTGACTTTGATCTACTTTGATTTGTATCACAACCATCATGAGTTGGTGGTCAAAAAGGATCATGGCTTTAATAAAGAACCTAGATGGAATGAGTTTAATCCATGGTGGTTAACTACTTAGGAGTTACACCCAAATGTTGTAAGGTCAATCAAGTTGTCTCATGATTAGTTGAGGTACATATAAGATGCCTCGGACGCTCATAGATATAAAAGAACATAAAAAATTTTGATTCGT

mRNA sequence

CAATACAAGACACGTATCATGAAATTAAAGACAAATGACTTTATTTTATTGAGGAAGCGCTGAGCGATAGAAGGAGCAAGGAACCCCAAAGCTGAAAATGCTGGCGAAAAGGTTCGTTTCCATGTTCAAGCGCTCTCCAAATCCACGGTCTTCCAGCAGTTCCATAAAGCCATCGGAGGATGGGGTGAATAAATGGGGTCGGAAAGCAGTCTCTTTTGTACTTATTACTGTTACTGGTGGTGTAGCTTTGAGTGCTTTAGATGACCTTGCCATTTATCATAGCTGTAGCAGCAAAGCCATAGAGAAAGCCAGAAACAATCAAGCAGTTATAGATGCTATTGGAGAACCCATTGCTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCAGTATCAGGACCACAAGGCACAGGGATCCTCCAACTGAAGGCAGTTCGTAATGGAGAGGATTCCTGGATTTCTTTTCTCCGGCCTCGAGACTGGGACATTCTGATCATGGATGCTCTCCTTCATGTTCCTGCAAACGAAGGTAAGCAGAAAACATTGCGTATTAACCTCACTGAGAAGTTTGCCCCCGCTGCTTGTGTCTCATGCACTGACTGTCAGCCTCCAGAGACAGAGAAGAGATGAAGTCAGCTTGTAAGGTTATTGAGAAACTATTGTCAAAAGTTAGCAGTTTCTATCAGGTTTCTGTCCCGACATGATTTTGAGCTAACCGAAGGATCAAAGTATTCGTTATCCACACCAAAATAATATTTTCTTTGAGGTTGAGTTCAAACTATGGTGGAATCAGTTTAGAAGATTTATTATTATACAACTTTGCTGACATCAAATGTGGCAAAGTTATATGGTTCTCCTGTAAAACCCAAGTTATAAAAGAAATAATAGTAGTTATTCACTTGATTTTTGTTCTTATTTGTTTGTTTGGGTAGGGGGTGGGGGTCGTGTTCTACAGATGTTGCCATTGACTTTGATCTACTTTGATTTGTATCACAACCATCATGAGTTGGTGGTCAAAAAGGATCATGGCTTTAATAAAGAACCTAGATGGAATGAGTTTAATCCATGGTGGTTAACTACTTAGGAGTTACACCCAAATGTTGTAAGGTCAATCAAGTTGTCTCATGATTAGTTGAGGTACATATAAGATGCCTCGGACGCTCATAGATATAAAAGAACATAAAAAATTTTGATTCGT

Coding sequence (CDS)

ATGCTGGCGAAAAGGTTCGTTTCCATGTTCAAGCGCTCTCCAAATCCACGGTCTTCCAGCAGTTCCATAAAGCCATCGGAGGATGGGGTGAATAAATGGGGTCGGAAAGCAGTCTCTTTTGTACTTATTACTGTTACTGGTGGTGTAGCTTTGAGTGCTTTAGATGACCTTGCCATTTATCATAGCTGTAGCAGCAAAGCCATAGAGAAAGCCAGAAACAATCAAGCAGTTATAGATGCTATTGGAGAACCCATTGCTAAAGGTCCATGGTACAATGCATCACTTGCAGTAGCTCATAAGAGACATTCTCTATCCTGCACGTTTCCAGTATCAGGACCACAAGGCACAGGGATCCTCCAACTGAAGGCAGTTCGTAATGGAGAGGATTCCTGGATTTCTTTTCTCCGGCCTCGAGACTGGGACATTCTGATCATGGATGCTCTCCTTCATGTTCCTGCAAACGAAGGTAAGCAGAAAACATTGCGTATTAACCTCACTGAGAAGTTTGCCCCCGCTGCTTGTGTCTCATGCACTGACTGTCAGCCTCCAGAGACAGAGAAGAGATGA

Protein sequence

MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR

Homology

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BLAST of Lsi09G018000 vs. TrEMBL
Match: A0A0A0KF26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087990 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 2.8e-93
Identity = 172/189 (91.01%), Postives = 180/189 (95.24%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAI 60
           MLAKRF S+FKRS  P +SS+SIKP+E+ VNK WGRKAVSFVLITVTGGVALSALDDLAI
Sbjct: 1   MLAKRFASIFKRSSTPHASSNSIKPTENEVNKSWGRKAVSFVLITVTGGVALSALDDLAI 60

Query: 61  YHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL 120
           YHSCSSKAIEK RNNQAVIDAIGEPI KGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL
Sbjct: 61  YHSCSSKAIEKVRNNQAVIDAIGEPIDKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL 120

Query: 121 QLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTD 180
           QLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINL+EKFAPAACVSCTD
Sbjct: 121 QLKAVRNGEDSWISFLRPRDWDILMMDALLYVPENEGKQKTLRINLSEKFAPAACVSCTD 180

Query: 181 CQPPETEKR 189
           CQPPETEKR
Sbjct: 181 CQPPETEKR 189

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BLAST of Lsi09G018000 vs. TrEMBL
Match: A0A061DNP0_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003906 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 3.9e-71
Identity = 131/188 (69.68%), Postives = 157/188 (83.51%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           M+    VS FK SP+ + SS+    +E+    + RKAVSFVLITVTGGVALSALDDLAIY
Sbjct: 1   MIWSTLVSFFKNSPSSKVSSTGNSVNEEKSKSFVRKAVSFVLITVTGGVALSALDDLAIY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
           H CSSKA+EKA  NQA+IDAIGEPI KGPWYNASLAVAHKRHS+SCTFPVSGPQGTG+LQ
Sbjct: 61  HGCSSKAMEKASKNQAIIDAIGEPIEKGPWYNASLAVAHKRHSVSCTFPVSGPQGTGVLQ 120

Query: 121 LKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDC 180
           LKAVRNG+D+W S++ PRDW+ILIM+ALLHVP NE KQ+TLRI+L EK    AC++CT+C
Sbjct: 121 LKAVRNGDDNWYSYILPRDWEILIMEALLHVPGNEEKQQTLRISLLEKTPSPACIACTEC 180

Query: 181 QPPETEKR 189
           +P ++EK+
Sbjct: 181 RPQQSEKK 188

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BLAST of Lsi09G018000 vs. TrEMBL
Match: I1N9V0_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G168400 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 9.7e-70
Identity = 131/186 (70.43%), Postives = 152/186 (81.72%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           MLAKR  S FK SP P+ S+S+ K  E+    +G+KAVSF LIT+TGGVALSALDDLAIY
Sbjct: 1   MLAKRLSSFFKLSPKPQISTSTKKVDEETGKYYGKKAVSFFLITITGGVALSALDDLAIY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
           H CS KA+EK   NQA+IDAIGEPI KGPWYNASL+VAHKRHS+SC+FPVSGPQGTG+LQ
Sbjct: 61  HGCSRKAMEKVSKNQALIDAIGEPIVKGPWYNASLSVAHKRHSVSCSFPVSGPQGTGVLQ 120

Query: 121 LKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDC 180
           LKAVRNG+D+W SF  PRDWDILIMDALLHVP NE K +TLRINL +K  P +C +CT+C
Sbjct: 121 LKAVRNGDDTWSSFFLPRDWDILIMDALLHVPGNEEKHQTLRINLADK--PLSCTTCTEC 180

Query: 181 QPPETE 187
            P  +E
Sbjct: 181 TPHPSE 184

[Close]

BLAST of Lsi09G018000 vs. TrEMBL
Match: A0A0B2NZG9_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_002489 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 9.7e-70
Identity = 131/186 (70.43%), Postives = 152/186 (81.72%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           MLAKR  S FK SP P+ S+S+ K  E+    +G+KAVSF LIT+TGGVALSALDDLAIY
Sbjct: 1   MLAKRLSSFFKLSPKPQISTSTKKVDEETGKYYGKKAVSFFLITITGGVALSALDDLAIY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
           H CS KA+EK   NQA+IDAIGEPI KGPWYNASL+VAHKRHS+SC+FPVSGPQGTG+LQ
Sbjct: 61  HGCSRKAMEKVSKNQALIDAIGEPIVKGPWYNASLSVAHKRHSVSCSFPVSGPQGTGVLQ 120

Query: 121 LKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDC 180
           LKAVRNG+D+W SF  PRDWDILIMDALLHVP NE K +TLRINL +K  P +C +CT+C
Sbjct: 121 LKAVRNGDDTWSSFFLPRDWDILIMDALLHVPGNEEKHQTLRINLADK--PLSCTTCTEC 180

Query: 181 QPPETE 187
            P  +E
Sbjct: 181 TPHPSE 184

[Close]

BLAST of Lsi09G018000 vs. TrEMBL
Match: W9RB84_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_015872 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 129/185 (69.73%), Postives = 150/185 (81.08%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           ML +RF+S FK SP  + SSS     E+    +GRKAVSF+LITVTGGVALSALDDLA+Y
Sbjct: 1   MLGRRFISFFKNSPKSKLSSSKNPVDEEIDKSFGRKAVSFILITVTGGVALSALDDLALY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
           HSCS KA+EK  NNQ + DA+GEPI KGPWYNASLAVAHKR S+SCTFPVSGPQGTG+LQ
Sbjct: 61  HSCSRKALEKIGNNQQIKDALGEPIVKGPWYNASLAVAHKRQSVSCTFPVSGPQGTGVLQ 120

Query: 121 LKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKF--APAACVSCT 180
           LKAVRNGED+W SFLRPRDWDI+IMDALLHVP N+ K +T RI++++ F   P AC +CT
Sbjct: 121 LKAVRNGEDTWFSFLRPRDWDIIIMDALLHVPGNDEKHQTFRISVSDYFPPPPQACTACT 180

Query: 181 DCQPP 184
           DC  P
Sbjct: 181 DCSKP 185

[Close]

BLAST of Lsi09G018000 vs. TAIR10
Match: AT2G20390.2 (AT2G20390.2 unknown protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.3e-46
Identity = 108/223 (48.43%), Postives = 139/223 (62.33%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           M A+RF S FK S     S+SS   +   +  +GRKAVSFVLITVTGGVALSALDDL+IY
Sbjct: 1   MFARRFTSFFKGS-----STSSPDKTAGTLGSFGRKAVSFVLITVTGGVALSALDDLSIY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
             CSSKA+EK  N++ +I+AIGEPI KGPWYNASLAV+H+RHS+SC+FPV GPQGTGIL 
Sbjct: 61  RGCSSKAMEKVMNSKVMIEAIGEPIEKGPWYNASLAVSHQRHSVSCSFPVIGPQGTGILH 120

Query: 121 LKAVRNG------------EDSWISFLRPRDWDIL-------IMDAL------------- 180
           LKAVRNG            ++  + +L    + ++       I D++             
Sbjct: 121 LKAVRNGGKHSQTRTVTQRQNICVRYLHLPFFLLIGSPFLLGIEDSMFGFLQQRDWDILI 180

Query: 181 ----LHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEK 188
               +HVP+NEG Q+TLRIN+T+   P+        +P E EK
Sbjct: 181 MDALVHVPSNEGPQQTLRINVTDIVDPSPGTHDKPLEPLEPEK 218

[Close]

BLAST of Lsi09G018000 vs. NCBI nr
Match: gi|449445634|ref|XP_004140577.1| (PREDICTED: uncharacterized protein LOC101206927 [Cucumis sativus])

HSP 1 Score: 349.4 bits (895), Expect = 4.0e-93
Identity = 172/189 (91.01%), Postives = 180/189 (95.24%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAI 60
           MLAKRF S+FKRS  P +SS+SIKP+E+ VNK WGRKAVSFVLITVTGGVALSALDDLAI
Sbjct: 1   MLAKRFASIFKRSSTPHASSNSIKPTENEVNKSWGRKAVSFVLITVTGGVALSALDDLAI 60

Query: 61  YHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL 120
           YHSCSSKAIEK RNNQAVIDAIGEPI KGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL
Sbjct: 61  YHSCSSKAIEKVRNNQAVIDAIGEPIDKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL 120

Query: 121 QLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTD 180
           QLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINL+EKFAPAACVSCTD
Sbjct: 121 QLKAVRNGEDSWISFLRPRDWDILMMDALLYVPENEGKQKTLRINLSEKFAPAACVSCTD 180

Query: 181 CQPPETEKR 189
           CQPPETEKR
Sbjct: 181 CQPPETEKR 189

[Close]

BLAST of Lsi09G018000 vs. NCBI nr
Match: gi|659120019|ref|XP_008459968.1| (PREDICTED: uncharacterized protein LOC103498925 isoform X1 [Cucumis melo])

HSP 1 Score: 347.8 bits (891), Expect = 1.2e-92
Identity = 173/189 (91.53%), Postives = 179/189 (94.71%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAI 60
           MLAKRF S+FKRS  P +SS+SIKPSE+ VNK WGRKAVSFVLITVTGGVALSALDDLAI
Sbjct: 20  MLAKRFASIFKRSSTPYASSNSIKPSENEVNKSWGRKAVSFVLITVTGGVALSALDDLAI 79

Query: 61  YHSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGIL 120
           YHSCSSKAIEKARNNQAV DAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQG GIL
Sbjct: 80  YHSCSSKAIEKARNNQAVKDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGAGIL 139

Query: 121 QLKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTD 180
           QLKAVRNGEDSWISFLRPRDWDIL+MDALL+VP NEGKQKTLRINLTEKFAPAACVSCT 
Sbjct: 140 QLKAVRNGEDSWISFLRPRDWDILMMDALLYVPENEGKQKTLRINLTEKFAPAACVSCTG 199

Query: 181 CQPPETEKR 189
           CQPPETEKR
Sbjct: 200 CQPPETEKR 208

[Close]

BLAST of Lsi09G018000 vs. NCBI nr
Match: gi|659120021|ref|XP_008459969.1| (PREDICTED: uncharacterized protein LOC103498925 isoform X2 [Cucumis melo])

HSP 1 Score: 323.6 bits (828), Expect = 2.4e-85
Identity = 159/169 (94.08%), Postives = 163/169 (96.45%), Query Frame = 1


Query: 21  SSIKPSEDGVNK-WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVID 80
           +SIKPSE+ VNK WGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAV D
Sbjct: 9   NSIKPSENEVNKSWGRKAVSFVLITVTGGVALSALDDLAIYHSCSSKAIEKARNNQAVKD 68

Query: 81  AIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQLKAVRNGEDSWISFLRPRD 140
           AIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQG GILQLKAVRNGEDSWISFLRPRD
Sbjct: 69  AIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGAGILQLKAVRNGEDSWISFLRPRD 128

Query: 141 WDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDCQPPETEKR 189
           WDIL+MDALL+VP NEGKQKTLRINLTEKFAPAACVSCT CQPPETEKR
Sbjct: 129 WDILMMDALLYVPENEGKQKTLRINLTEKFAPAACVSCTGCQPPETEKR 177

[Close]

BLAST of Lsi09G018000 vs. NCBI nr
Match: gi|590715325|ref|XP_007050163.1| (Uncharacterized protein TCM_003906 [Theobroma cacao])

HSP 1 Score: 275.8 bits (704), Expect = 5.6e-71
Identity = 131/188 (69.68%), Postives = 157/188 (83.51%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           M+    VS FK SP+ + SS+    +E+    + RKAVSFVLITVTGGVALSALDDLAIY
Sbjct: 1   MIWSTLVSFFKNSPSSKVSSTGNSVNEEKSKSFVRKAVSFVLITVTGGVALSALDDLAIY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
           H CSSKA+EKA  NQA+IDAIGEPI KGPWYNASLAVAHKRHS+SCTFPVSGPQGTG+LQ
Sbjct: 61  HGCSSKAMEKASKNQAIIDAIGEPIEKGPWYNASLAVAHKRHSVSCTFPVSGPQGTGVLQ 120

Query: 121 LKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDC 180
           LKAVRNG+D+W S++ PRDW+ILIM+ALLHVP NE KQ+TLRI+L EK    AC++CT+C
Sbjct: 121 LKAVRNGDDNWYSYILPRDWEILIMEALLHVPGNEEKQQTLRISLLEKTPSPACIACTEC 180

Query: 181 QPPETEKR 189
           +P ++EK+
Sbjct: 181 RPQQSEKK 188

[Close]

BLAST of Lsi09G018000 vs. NCBI nr
Match: gi|1009165641|ref|XP_015901150.1| (PREDICTED: uncharacterized protein LOC107434225 [Ziziphus jujuba])

HSP 1 Score: 273.9 bits (699), Expect = 2.1e-70
Identity = 128/186 (68.82%), Postives = 155/186 (83.33%), Query Frame = 1


Query: 1   MLAKRFVSMFKRSPNPRSSSSSIKPSEDGVNKWGRKAVSFVLITVTGGVALSALDDLAIY 60
           ML ++F+S FKRSP  + SSS+  P E     +GRKAVSFVLITVTGG+ALSALDDLAIY
Sbjct: 1   MLGRKFISFFKRSPKLQVSSSA-SPDEGNNKSFGRKAVSFVLITVTGGIALSALDDLAIY 60

Query: 61  HSCSSKAIEKARNNQAVIDAIGEPIAKGPWYNASLAVAHKRHSLSCTFPVSGPQGTGILQ 120
           H CSSKA+EKA  NQA+ DAIGEPI KGPWYNASLAVAHKR+S+SC+FPVSGP GTG+LQ
Sbjct: 61  HGCSSKAMEKASENQAIKDAIGEPIMKGPWYNASLAVAHKRNSVSCSFPVSGPHGTGVLQ 120

Query: 121 LKAVRNGEDSWISFLRPRDWDILIMDALLHVPANEGKQKTLRINLTEKFAPAACVSCTDC 180
           LKA+RNGED+W SF RPRDWDI+IMDALLH+P NE KQ+T+R+++++ F P AC +CT C
Sbjct: 121 LKAIRNGEDTWFSFFRPRDWDIIIMDALLHIPGNEEKQQTMRVSVSDYFPPPACTACTGC 180

Query: 181 QPPETE 187
           +  E +
Sbjct: 181 EVGEKD 185

The following BLAST results are available for this feature:

BLAST of Lsi09G018000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G018000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF26_CUCSA	2.8e-93	91.01	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087990 PE=4 SV=1	[more]
A0A061DNP0_THECC	3.9e-71	69.68	Uncharacterized protein OS=Theobroma cacao GN=TCM_003906 PE=4 SV=1	[more]
I1N9V0_SOYBN	9.7e-70	70.43	Uncharacterized protein OS=Glycine max GN=GLYMA_19G168400 PE=4 SV=1	[more]
A0A0B2NZG9_GLYSO	9.7e-70	70.43	Uncharacterized protein OS=Glycine soja GN=glysoja_002489 PE=4 SV=1	[more]
W9RB84_9ROSA	1.3e-69	69.73	Uncharacterized protein OS=Morus notabilis GN=L484_015872 PE=4 SV=1	[more]

BLAST of Lsi09G018000 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20390.2	1.3e-46	48.43	unknown protein	[more]

BLAST of Lsi09G018000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445634\|ref\|XP_004140577.1\|	4.0e-93	91.01	PREDICTED: uncharacterized protein LOC101206927 [Cucumis sativus]	[more]
gi\|659120019\|ref\|XP_008459968.1\|	1.2e-92	91.53	PREDICTED: uncharacterized protein LOC103498925 isoform X1 [Cucumis melo]	[more]
gi\|659120021\|ref\|XP_008459969.1\|	2.4e-85	94.08	PREDICTED: uncharacterized protein LOC103498925 isoform X2 [Cucumis melo]	[more]
gi\|590715325\|ref\|XP_007050163.1\|	5.6e-71	69.68	Uncharacterized protein TCM_003906 [Theobroma cacao]	[more]
gi\|1009165641\|ref\|XP_015901150.1\|	2.1e-70	68.82	PREDICTED: uncharacterized protein LOC107434225 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR014807	Cyt_oxidase_assembly-1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G018000.1	Lsi09G018000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014807	Cytochrome oxidase assembly protein 1	PFAM	PF08695	Coa1	coord: 49..129 score: 4.
None	No IPR available	PANTHER	PTHR35114	FAMILY NOT NAMED	coord: 1..186 score: 2.0
None	No IPR available	PANTHER	PTHR35114:SF1	SUBFAMILY NOT NAMED	coord: 1..186 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G018000	Csa6G087990	Cucumber (Chinese Long) v2	culsiB402
Lsi09G018000	CSPI06G06980	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G018000	Cucsa.348860	Cucumber (Gy14) v1	cgylsiB562
Lsi09G018000	CmaCh17G013710	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G018000	CmoCh17G013250	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G018000	Cla007063	Watermelon (97103) v1	lsiwmB041
Lsi09G018000	MELO3C022392	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G018000	ClCG06G001410	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G018000	MELO3C022392.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G018000	Cla97C06G110710	Watermelon (97103) v2	lsiwmbB026
Lsi09G018000	Bhi12G002084	Wax gourd	lsiwgoB021
Lsi09G018000	Cp4.1LG12g10170	Cucurbita pepo (Zucchini)	cpelsiB103
Lsi09G018000	CsGy6G007000	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G018000	Carg11539	Silver-seed gourd	carlsiB011
Lsi09G018000	CsaV3_6G007350	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G018000	Cucurbita maxima (Rimu)	cmalsiB812
Lsi09G018000	Cucurbita moschata (Rifu)	cmolsiB798
Lsi09G018000	Cucurbita pepo (Zucchini)	cpelsiB249
Lsi09G018000	Silver-seed gourd	carlsiB890