Lsi09G017740 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017740
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_12
Location	chr09 : 26494253 .. 26495163 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGAAAATGCTTCTTCATCTTCTTCTAAGTTAATAAGCAAAAAAAACCGTTACATTATATGTAATTAATTAATTAATTAATTATAATGTTGGTGGATGCATACACAGGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCATCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACTTCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGTCAACGCCTTTCCCTTTTTTAATTATTCAAAATGAAGTGCATATTTTGAGTTGAAAATTAGGAATACTAATGCATGCATGGATGGACTTGCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGATGAAACATCCTCCCAACTATTTATTTATTTATTTATTTATTTATTTATTTTCTTCGTGATATGATATGTGTATATATATATATATATATTTAAATATTATGGGCCCTTCTGCTTTTCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTATAGTACTAGCTACTGCTAGGGAATGCGGTCCTCATTTGTTTAATTAATTTTCTTTTTCGTATAATATAATAAAAGCAATTTAATTGGATAACCCAAA

mRNA sequence

AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGAAAATGCTTCTTCATCTTCTTCTAAGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCATCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACTTCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGATGAAACATCCTCCCAACTATTTATTTATTTATTTATTTATTTATTTATTTTCTTCGTGATATGATATGTGTATATATATATATATATATTTAAATATTATGGGCCCTTCTGCTTTTCTCTTCACTTTCTAGTATTGGGTGAAGACTGAAGTATAGTACTAGCTACTGCTAGGGAATGCGGTCCTCATTTGTTTAATTAATTTTCTTTTTCGTATAATATAATAAAAGCAATTTAATTGGATAACCCAAA

Coding sequence (CDS)

AAATATTTATATATGCAGAATAAGTTGTGGAAATCAATGCTTGTTGAAACTAGGATCCAAGGGAAGCGTGGTTTCGCCTCGTCCACTACGGCCCCACCGGCTAATATTGAAAATGCTTCTTCATCTTCTTCTAAGGGCGGTTCTAGTAAGAGCGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTTTGTCCATCGGAACCCACACCGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTTAACCTGAACAAGAAGAAGAGGGAGAGCATTCCAGAGGTGGAGGATCCCGACACCGTCATTACTTCCGCCGACAAATTTATCAACAAATCCTTTCTTAGGAAGGTCGCTCACATCCAGGACAACCCCAAGACGCTACCGGATCCCGTTCACCCCGACCCATTTACCCGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGACGTTGA

Protein sequence

KYLYMQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

Homology

[Close]

BLAST of Lsi09G017740 vs. TrEMBL
Match: A0A0A0KC39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.8e-65
Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 1


Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPAN-IENASS--SSSKGGSSKSEYMKGEYAPI 64
           + NK+WKSMLVETRIQG R F+SSTT P AN I+NASS  SSS GGS  SEYMKGEYAPI
Sbjct: 8   LANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPI 67

Query: 65  YIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFL 124
           YIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFL
Sbjct: 68  YIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFL 127

Query: 125 RKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           RKVAHIQ + KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 128 RKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Lsi09G017740 vs. TrEMBL
Match: E5GB52_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 8.9e-64
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 13  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVAL 72
           MLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAVVV 60

Query: 73  SIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPK 132
           SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ K
Sbjct: 61  SIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDTK 120

Query: 133 TLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           TLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Lsi09G017740 vs. TrEMBL
Match: W9RLB6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017004 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.0e-43
Identity = 99/154 (64.29%), Postives = 120/154 (77.92%), Query Frame = 1


Query: 10  WKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSS--KSEYMKGEYAPIYIVMGM 69
           W+SML   R+   R F +ST AP      A+  ++    S  ++  MKGE+APIY+VMGM
Sbjct: 9   WRSMLA--RLGSDRPFVTST-APKLKTFTATFDAAHSAQSNFRALAMKGEFAPIYMVMGM 68

Query: 70  VAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI 129
           V VA++I THTAKQQLLHSP VN+NKKKRE++PEV+DPD VI+SADKF+NKSFLRKVAHI
Sbjct: 69  VVVAVTIATHTAKQQLLHSPAVNINKKKRETMPEVDDPDGVISSADKFVNKSFLRKVAHI 128

Query: 130 QDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTR 162
           QD+  TL DPV P+PFTRPRNAETLKT GVDP+R
Sbjct: 129 QDHNPTLRDPVRPNPFTRPRNAETLKTVGVDPSR 159

[Close]

BLAST of Lsi09G017740 vs. TrEMBL
Match: A0A061E5D3_THECC (Ribosome biogenesis protein NEP1-like, putative OS=Theobroma cacao GN=TCM_008267 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-39
Identity = 87/151 (57.62%), Postives = 105/151 (69.54%), Query Frame = 1


Query: 10  WKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVA 69
           WKSM+        R FASSTT         ++++          + GEYAP+YIVMGM+ 
Sbjct: 106 WKSMITPLGRTHSRSFASSTTPKLKQYSTTANAAHNPRPYNKYSISGEYAPVYIVMGMLV 165

Query: 70  VALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD 129
           VA+SI  HTAKQ L+H+P V ++KKKRESI E + PD  + SADKF+NKSFLRKVAHIQD
Sbjct: 166 VAISIAAHTAKQHLMHAPGVVISKKKRESISEADHPDQALASADKFLNKSFLRKVAHIQD 225

Query: 130 NPKTLPDPVHPDPFTRPRNAETLKTAGVDPT 161
           N +TLPDP  PDPFTRPR AETLKT GVDP+
Sbjct: 226 NKRTLPDPSRPDPFTRPRTAETLKTVGVDPS 256

[Close]

BLAST of Lsi09G017740 vs. TrEMBL
Match: A0A059BBM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01269 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 1.2e-36
Identity = 84/153 (54.90%), Postives = 111/153 (72.55%), Query Frame = 1


Query: 10  WKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVA 69
           W+SML        R FA++T  P      A ++ S     +S  ++GEYAP+ +V  M+ 
Sbjct: 9   WRSMLSRAGAS-HRSFATATK-PKMFAATAGATHSDHHHERSSLLRGEYAPVGMVFAMLL 68

Query: 70  VALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD 129
           VA++IG HT KQQL HSP V ++KKKRE++PEV+DPD+V+ SADKF+NKSFLRKVAHIQ+
Sbjct: 69  VAMTIGMHTMKQQLAHSPGVRVSKKKRETVPEVDDPDSVVRSADKFLNKSFLRKVAHIQE 128

Query: 130 NPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           N +TLPDPV  +P+ +PR AETLK AGV+PTRR
Sbjct: 129 NKRTLPDPVRANPYAKPREAETLKMAGVNPTRR 159

[Close]

BLAST of Lsi09G017740 vs. TAIR10
Match: AT1G63060.1 (AT1G63060.1 unknown protein)

HSP 1 Score: 116.7 bits (291), Expect = 1.3e-26
Identity = 55/105 (52.38%), Postives = 76/105 (72.38%), Query Frame = 1


Query: 56  GEYAPIYIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKF 115
           GE+AP+ I+ G V +A+ +  H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SADKF
Sbjct: 41  GEFAPVAIIGGFVGLAVLMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDPENCVSSADKF 100

Query: 116 INKSFLRKVAHIQDNPKT-LPDPVHPDPFTRPRNAETLKTAGVDP 160
           INKS+LRKV  IQD  K  L DP  P+PFT PRNAETL + GV P
Sbjct: 101 INKSWLRKVGQIQDKSKAILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]

BLAST of Lsi09G017740 vs. TAIR10
Match: AT5G07330.1 (AT5G07330.1 unknown protein)

HSP 1 Score: 104.0 bits (258), Expect = 8.9e-23
Identity = 52/145 (35.86%), Postives = 89/145 (61.38%), Query Frame = 1


Query: 19  IQGKRGFASSTTAPPANIENASSSSSKGG--SSKSEYMKGEYAPIYIVMGMVAVALSIGT 78
           +Q  R +  +TT P +   + +++   G   ++ +   KG++ P+Y+ +G+++++++ G 
Sbjct: 13  VQRLRTYTKATTVPRSKAYSTAATEYGGQRTATTAAATKGDFTPVYVSIGLISLSVTFGV 72

Query: 79  HTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ--DNPKTL 138
           +TA   L  +P V +NKK RE++PE+EDPD V+  AD+F N+S+ RK+AH+Q  D    +
Sbjct: 73  YTAYLHLHENPGVRVNKKMRETVPEIEDPDRVLNEADRFANRSWFRKIAHVQEFDKQDVI 132

Query: 139 PDPVHPDPFTRPRNAETLKTAGVDP 160
            DP+  D F     A TLK  GVDP
Sbjct: 133 SDPIRKDQFAHKPRALTLKDVGVDP 157

[Close]

BLAST of Lsi09G017740 vs. NCBI nr
Match: gi|659119944|ref|XP_008459927.1| (PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 1.9e-67
Identity = 136/158 (86.08%), Postives = 144/158 (91.14%), Query Frame = 1


Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIV 64
           + NK+WKSMLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIV
Sbjct: 8   LANKMWKSMLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIV 67

Query: 65  MGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 124
           MGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKV
Sbjct: 68  MGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKV 127

Query: 125 AHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           AHIQD+ KTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 128 AHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Lsi09G017740 vs. NCBI nr
Match: gi|778711712|ref|XP_004140656.2| (PREDICTED: uncharacterized protein LOC101206372 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 4.0e-65
Identity = 135/161 (83.85%), Postives = 144/161 (89.44%), Query Frame = 1


Query: 5   MQNKLWKSMLVETRIQGKRGFASSTTAPPAN-IENASS--SSSKGGSSKSEYMKGEYAPI 64
           + NK+WKSMLVETRIQG R F+SSTT P AN I+NASS  SSS GGS  SEYMKGEYAPI
Sbjct: 8   LANKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPI 67

Query: 65  YIVMGMVAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFL 124
           YIVMGMVAV +SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFL
Sbjct: 68  YIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFL 127

Query: 125 RKVAHIQDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           RKVAHIQ + KTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 128 RKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Lsi09G017740 vs. NCBI nr
Match: gi|307135822|gb|ADN33694.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 251.1 bits (640), Expect = 1.3e-63
Identity = 131/150 (87.33%), Postives = 137/150 (91.33%), Query Frame = 1


Query: 13  MLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVAVAL 72
           MLV TRIQG R FASSTTAP AN  ++SSSSSKGGS  SEYMKGEYAPIYIVMGMVAV +
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVAVVV 60

Query: 73  SIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDNPK 132
           SI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD+ K
Sbjct: 61  SIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQDDTK 120

Query: 133 TLPDPVHPDPFTRPRNAETLKTAGVDPTRR 163
           TLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 TLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Lsi09G017740 vs. NCBI nr
Match: gi|703126148|ref|XP_010103496.1| (hypothetical protein L484_017004 [Morus notabilis])

HSP 1 Score: 183.0 bits (463), Expect = 4.3e-43
Identity = 99/154 (64.29%), Postives = 120/154 (77.92%), Query Frame = 1


Query: 10  WKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSS--KSEYMKGEYAPIYIVMGM 69
           W+SML   R+   R F +ST AP      A+  ++    S  ++  MKGE+APIY+VMGM
Sbjct: 9   WRSMLA--RLGSDRPFVTST-APKLKTFTATFDAAHSAQSNFRALAMKGEFAPIYMVMGM 68

Query: 70  VAVALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI 129
           V VA++I THTAKQQLLHSP VN+NKKKRE++PEV+DPD VI+SADKF+NKSFLRKVAHI
Sbjct: 69  VVVAVTIATHTAKQQLLHSPAVNINKKKRETMPEVDDPDGVISSADKFVNKSFLRKVAHI 128

Query: 130 QDNPKTLPDPVHPDPFTRPRNAETLKTAGVDPTR 162
           QD+  TL DPV P+PFTRPRNAETLKT GVDP+R
Sbjct: 129 QDHNPTLRDPVRPNPFTRPRNAETLKTVGVDPSR 159

[Close]

BLAST of Lsi09G017740 vs. NCBI nr
Match: gi|590691257|ref|XP_007043735.1| (Ribosome biogenesis protein NEP1-like, putative [Theobroma cacao])

HSP 1 Score: 169.9 bits (429), Expect = 3.8e-39
Identity = 87/151 (57.62%), Postives = 105/151 (69.54%), Query Frame = 1


Query: 10  WKSMLVETRIQGKRGFASSTTAPPANIENASSSSSKGGSSKSEYMKGEYAPIYIVMGMVA 69
           WKSM+        R FASSTT         ++++          + GEYAP+YIVMGM+ 
Sbjct: 106 WKSMITPLGRTHSRSFASSTTPKLKQYSTTANAAHNPRPYNKYSISGEYAPVYIVMGMLV 165

Query: 70  VALSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD 129
           VA+SI  HTAKQ L+H+P V ++KKKRESI E + PD  + SADKF+NKSFLRKVAHIQD
Sbjct: 166 VAISIAAHTAKQHLMHAPGVVISKKKRESISEADHPDQALASADKFLNKSFLRKVAHIQD 225

Query: 130 NPKTLPDPVHPDPFTRPRNAETLKTAGVDPT 161
           N +TLPDP  PDPFTRPR AETLKT GVDP+
Sbjct: 226 NKRTLPDPSRPDPFTRPRTAETLKTVGVDPS 256

The following BLAST results are available for this feature:

BLAST of Lsi09G017740 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi09G017740 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC39_CUCSA	2.8e-65	83.85	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091280 PE=4 SV=1	[more]
E5GB52_CUCME	8.9e-64	87.33	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RLB6_9ROSA	3.0e-43	64.29	Uncharacterized protein OS=Morus notabilis GN=L484_017004 PE=4 SV=1	[more]
A0A061E5D3_THECC	2.6e-39	57.62	Ribosome biogenesis protein NEP1-like, putative OS=Theobroma cacao GN=TCM_008267...	[more]
A0A059BBM6_EUCGR	1.2e-36	54.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01269 PE=4 SV=1	[more]

BLAST of Lsi09G017740 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63060.1	1.3e-26	52.38	unknown protein	[more]
AT5G07330.1	8.9e-23	35.86	unknown protein	[more]

BLAST of Lsi09G017740 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119944\|ref\|XP_008459927.1\|	1.9e-67	86.08	PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]	[more]
gi\|778711712\|ref\|XP_004140656.2\|	4.0e-65	83.85	PREDICTED: uncharacterized protein LOC101206372 [Cucumis sativus]	[more]
gi\|307135822\|gb\|ADN33694.1\|	1.3e-63	87.33	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703126148\|ref\|XP_010103496.1\|	4.3e-43	64.29	hypothetical protein L484_017004 [Morus notabilis]	[more]
gi\|590691257\|ref\|XP_007043735.1\|	3.8e-39	57.62	Ribosome biogenesis protein NEP1-like, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017740.1	Lsi09G017740.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919	FAMILY NOT NAMED	coord: 10..159 score: 5.8
None	No IPR available	PANTHER	PTHR33919:SF3	SUBFAMILY NOT NAMED	coord: 10..159 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G017740	Csa6G091280	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017740	CSPI06G07290	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017740	Cucsa.349160	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017740	CmoCh08G000300	Cucurbita moschata (Rifu)	cmolsiB798
Lsi09G017740	Cla007088	Watermelon (97103) v1	lsiwmB041
Lsi09G017740	MELO3C022364	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017740	ClCG06G001670	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017740	MELO3C022364.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017740	Cla97C06G110960	Watermelon (97103) v2	lsiwmbB026
Lsi09G017740	Bhi12G002118	Wax gourd	lsiwgoB021
Lsi09G017740	Cp4.1LG17g09470	Cucurbita pepo (Zucchini)	cpelsiB249
Lsi09G017740	CsGy6G007300	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017740	Carg03802	Silver-seed gourd	carlsiB890
Lsi09G017740	CsaV3_6G007690	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017740	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G017740	Cucurbita maxima (Rimu)	cmalsiB812
Lsi09G017740	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G017740	Cucurbita pepo (Zucchini)	cpelsiB103
Lsi09G017740	Silver-seed gourd	carlsiB011