Cla007088 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla007088
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr6 : 1625996 .. 1627615 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGTTCAGAACCTCTCTCACAGTAAGCCTCACATTGCTTCCAATCCATTCTGTTTTTCTTCTCTTTTCAATATCATATAATATGATATAATTGTGTGACTATGTATTATTAATTTAATTAACGTGTGTGTGTGTGTATATATGTATATAGATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATAAGTTAATAAACAAAAACCATTATAGTATATGTAATTAATTAGAATGTTGTTGGTGCATGTCATGTGGATTGGTTAATTTGATGATAATATATATAATAATATAATATGGTGGTAAACAGGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACAGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGTCAACCCCTTTTCTTTCCCTCATTTCCTTGACAGACAAATAACATTTGAGTTTTTTTTTTTTTTTTTTTTTTTTTCCTTTTTTTTCTTTCTTTCTTTCTTTAACTAATTTATTATTTTTAATTTATTTTAAGAGAATTTATTATTAATAGAAAAAATATCATACTATTTATAAATATATAAAAAAAATTGTGTAAAATTTTATTACATTTTCTATATTTAAAAATAATTCATATTTTGATAAATAATAATTAGATTTTTAATAGATTTTCAAGGAGATAAATCTTAGAGTGTTGATGTAATTAAATTTAACTGTAATTTATGAACTTAAACTTTTGGATCTTGGACTTATACAAACAACAAGGTTTAATTCTTAATCTTTAGGTTTTTGTTTTCTTTTAGAGAGAGAATAGATAAGTAGGAGGGCATTAACGTAAGCTTAAGAGCTTCCATTAGGTGCAACTTGGGTTTCACAGAAGTTGCAAGAAAATTTTGGGAGAATCTACCCATATTATTATTATAAATTTTAAAATATAAGATTAAGATATTGCCTTTTGACACCCTTAACTTTATGTCTACATAAAAAAAAAAAAAAAAAAAAAATTACAAAAATTATCTTGGGCAGAGATCGAATGGCATCAAAAGCTAGAATTTTTCTTTTCCGAAAAAGATAATTTTCTTTTTGTAATTGGAGGAATACATGGAAATAAATATAAACTTGAACCAAGTATGAGTTGTTACAAATGATTTTTTGTTTTTTTAATTATAGGAAAAAACAAAAATGGTCTCCCATCCTATAAAATATATTTAGAGCTGAAAATTTAAGAATATTAATGCATGGATGCACTTGCGCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGA

mRNA sequence

ATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACAGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGA

Coding sequence (CDS)

ATGGCTTTGTTCAGAACCTCTCTCACAATGCAGAATAAAATGTGGAAATCAATGCTTGTTGGAACAAGAATCGAAGGGAAGCGTCGTCTCGCATCGTCCAATACAACCCCAGCGGCCAATATTGAAAATGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAATAAGGGCGGGTCTAGTGCGAGTGAGTACATGAAAGGCGAGTATGCCCCAATCTACATTGTGATGGGGATGGTGGCGGTGGCTGTGTCGATCGGAACCCACACAGCGAAGCAGCAGCTGTTGCATTCGCCGGTGGTGAACTTGAACAAGAAGAAGAGGGAAAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCCGCCGACAAGTTTATCAATAAATCATTTCTGAGGAAGGTGGCTCACATTCAGAACGACACCAAGACGCTACCGGATCCCGTTCACCCCGACCCGTTTACCAGGCCACGTAATGCGGAAACTCTGAAAACGGCTGGAGTGGATCCTACCCGTCGTTGA

Protein sequence

MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR

Homology

[Close]

BLAST of Cla007088 vs. TrEMBL
Match: A0A0A0KC39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.2e-71
Identity = 145/173 (83.82%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAAN-IENASSSSSSSSSNKGGSS 60
           M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+AN I+NASS SSSS+   GGS 
Sbjct: 1   MGLFRTSLA--NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSN---GGSG 60

Query: 61  ASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVI 120
            SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVI
Sbjct: 61  GSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI 120

Query: 121 TSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 173
           TSADKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 121 TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Cla007088 vs. TrEMBL
Match: E5GB52_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 2.7e-66
Identity = 133/155 (85.81%), Postives = 140/155 (90.32%), Query Frame = 1


Query: 18  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGM 77
           MLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  SEYMKGEYAPIYIVMGM
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSAN-----ASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGM 60

Query: 78  VAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI 137
           VAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI
Sbjct: 61  VAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI 120

Query: 138 QNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 173
           Q+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 QDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Cla007088 vs. TrEMBL
Match: W9RLB6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017004 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 3.8e-44
Identity = 97/157 (61.78%), Postives = 118/157 (75.16%), Query Frame = 1


Query: 15  WKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIV 74
           W+SML      G  R   ++T P      A+  ++ S+ +   + A   MKGE+APIY+V
Sbjct: 9   WRSMLARL---GSDRPFVTSTAPKLKTFTATFDAAHSAQSNFRALA---MKGEFAPIYMV 68

Query: 75  MGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 134
           MGMV VAV+I THTAKQQLLHSP VN+NKKKRE++PEV+DPD VI+SADKF+NKSFLRKV
Sbjct: 69  MGMVVVAVTIATHTAKQQLLHSPAVNINKKKRETMPEVDDPDGVISSADKFVNKSFLRKV 128

Query: 135 AHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTR 172
           AHIQ+   TL DPV P+PFTRPRNAETLKT GVDP+R
Sbjct: 129 AHIQDHNPTLRDPVRPNPFTRPRNAETLKTVGVDPSR 159

[Close]

BLAST of Cla007088 vs. TrEMBL
Match: A0A061E5D3_THECC (Ribosome biogenesis protein NEP1-like, putative OS=Theobroma cacao GN=TCM_008267 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.4e-38
Identity = 87/156 (55.77%), Postives = 114/156 (73.08%), Query Frame = 1


Query: 15  WKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIV 74
           WKSM+        R  ASS TTP   ++  S++++++ + +  +  S  + GEYAP+YIV
Sbjct: 106 WKSMITPLGRTHSRSFASS-TTP--KLKQYSTTANAAHNPRPYNKYS--ISGEYAPVYIV 165

Query: 75  MGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 134
           MGM+ VA+SI  HTAKQ L+H+P V ++KKKRESI E + PD  + SADKF+NKSFLRKV
Sbjct: 166 MGMLVVAISIAAHTAKQHLMHAPGVVISKKKRESISEADHPDQALASADKFLNKSFLRKV 225

Query: 135 AHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPT 171
           AHIQ++ +TLPDP  PDPFTRPR AETLKT GVDP+
Sbjct: 226 AHIQDNKRTLPDPSRPDPFTRPRTAETLKTVGVDPS 256

[Close]

BLAST of Cla007088 vs. TrEMBL
Match: A0A059BBM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01269 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 7.6e-37
Identity = 82/158 (51.90%), Postives = 110/158 (69.62%), Query Frame = 1


Query: 15  WKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIV 74
           W+SML  +R     R  ++ T P      A ++ S     +     S  ++GEYAP+ +V
Sbjct: 9   WRSML--SRAGASHRSFATATKPKMFAATAGATHSDHHHER-----SSLLRGEYAPVGMV 68

Query: 75  MGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 134
             M+ VA++IG HT KQQL HSP V ++KKKRE++PEV+DPD+V+ SADKF+NKSFLRKV
Sbjct: 69  FAMLLVAMTIGMHTMKQQLAHSPGVRVSKKKRETVPEVDDPDSVVRSADKFLNKSFLRKV 128

Query: 135 AHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 173
           AHIQ + +TLPDPV  +P+ +PR AETLK AGV+PTRR
Sbjct: 129 AHIQENKRTLPDPVRANPYAKPREAETLKMAGVNPTRR 159

[Close]

BLAST of Cla007088 vs. NCBI nr
Match: gi|659119944|ref|XP_008459927.1| (PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 9.4e-73
Identity = 146/172 (84.88%), Postives = 154/172 (89.53%), Query Frame = 1


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSA 60
           M+LFRTSL   NKMWKSMLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  
Sbjct: 1   MSLFRTSLA--NKMWKSMLVGTRIQGNRRFASSTTAPSAN-----ASSSSSSSSKGGSGG 60

Query: 61  SEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVIT 120
           SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVIT
Sbjct: 61  SEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVIT 120

Query: 121 SADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 173
           SADKFINKSFLRKVAHIQ+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 SADKFINKSFLRKVAHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Cla007088 vs. NCBI nr
Match: gi|778711712|ref|XP_004140656.2| (PREDICTED: uncharacterized protein LOC101206372 [Cucumis sativus])

HSP 1 Score: 277.3 bits (708), Expect = 1.8e-71
Identity = 145/173 (83.82%), Postives = 154/173 (89.02%), Query Frame = 1


Query: 1   MALFRTSLTMQNKMWKSMLVGTRIEGKRRLASSNTTPAAN-IENASSSSSSSSSNKGGSS 60
           M LFRTSL   NKMWKSMLV TRI+G RR +SS TTP+AN I+NASS SSSS+   GGS 
Sbjct: 1   MGLFRTSLA--NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSN---GGSG 60

Query: 61  ASEYMKGEYAPIYIVMGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVI 120
            SEYMKGEYAPIYIVMGMVAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVI
Sbjct: 61  GSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVI 120

Query: 121 TSADKFINKSFLRKVAHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 173
           TSADKFINKSFLRKVAHIQ+DTKTL DPVHPDPFTRPRNAETLKTAG+DPTRR
Sbjct: 121 TSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Cla007088 vs. NCBI nr
Match: gi|307135822|gb|ADN33694.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 259.6 bits (662), Expect = 3.8e-66
Identity = 133/155 (85.81%), Postives = 140/155 (90.32%), Query Frame = 1


Query: 18  MLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIVMGM 77
           MLVGTRI+G RR ASS T P+AN     +SSSSSSS+KGGS  SEYMKGEYAPIYIVMGM
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSAN-----ASSSSSSSSKGGSGGSEYMKGEYAPIYIVMGM 60

Query: 78  VAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI 137
           VAV VSI THTAKQQLLHSP+VN +KKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI
Sbjct: 61  VAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHI 120

Query: 138 QNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTRR 173
           Q+DTKTLPDPVH DPFTRPRNAETLKTAGVDPTRR
Sbjct: 121 QDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Cla007088 vs. NCBI nr
Match: gi|703126148|ref|XP_010103496.1| (hypothetical protein L484_017004 [Morus notabilis])

HSP 1 Score: 186.0 bits (471), Expect = 5.4e-44
Identity = 97/157 (61.78%), Postives = 118/157 (75.16%), Query Frame = 1


Query: 15  WKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIV 74
           W+SML      G  R   ++T P      A+  ++ S+ +   + A   MKGE+APIY+V
Sbjct: 9   WRSMLARL---GSDRPFVTSTAPKLKTFTATFDAAHSAQSNFRALA---MKGEFAPIYMV 68

Query: 75  MGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 134
           MGMV VAV+I THTAKQQLLHSP VN+NKKKRE++PEV+DPD VI+SADKF+NKSFLRKV
Sbjct: 69  MGMVVVAVTIATHTAKQQLLHSPAVNINKKKRETMPEVDDPDGVISSADKFVNKSFLRKV 128

Query: 135 AHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPTR 172
           AHIQ+   TL DPV P+PFTRPRNAETLKT GVDP+R
Sbjct: 129 AHIQDHNPTLRDPVRPNPFTRPRNAETLKTVGVDPSR 159

[Close]

BLAST of Cla007088 vs. NCBI nr
Match: gi|590691257|ref|XP_007043735.1| (Ribosome biogenesis protein NEP1-like, putative [Theobroma cacao])

HSP 1 Score: 167.5 bits (423), Expect = 2.0e-38
Identity = 87/156 (55.77%), Postives = 114/156 (73.08%), Query Frame = 1


Query: 15  WKSMLVGTRIEGKRRLASSNTTPAANIENASSSSSSSSSNKGGSSASEYMKGEYAPIYIV 74
           WKSM+        R  ASS TTP   ++  S++++++ + +  +  S  + GEYAP+YIV
Sbjct: 106 WKSMITPLGRTHSRSFASS-TTP--KLKQYSTTANAAHNPRPYNKYS--ISGEYAPVYIV 165

Query: 75  MGMVAVAVSIGTHTAKQQLLHSPVVNLNKKKRESIPEVEDPDTVITSADKFINKSFLRKV 134
           MGM+ VA+SI  HTAKQ L+H+P V ++KKKRESI E + PD  + SADKF+NKSFLRKV
Sbjct: 166 MGMLVVAISIAAHTAKQHLMHAPGVVISKKKRESISEADHPDQALASADKFLNKSFLRKV 225

Query: 135 AHIQNDTKTLPDPVHPDPFTRPRNAETLKTAGVDPT 171
           AHIQ++ +TLPDP  PDPFTRPR AETLKT GVDP+
Sbjct: 226 AHIQDNKRTLPDPSRPDPFTRPRTAETLKTVGVDPS 256

The following BLAST results are available for this feature:

BLAST of Cla007088 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC39_CUCSA	1.2e-71	83.82	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091280 PE=4 SV=1	[more]
E5GB52_CUCME	2.7e-66	85.81	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RLB6_9ROSA	3.8e-44	61.78	Uncharacterized protein OS=Morus notabilis GN=L484_017004 PE=4 SV=1	[more]
A0A061E5D3_THECC	1.4e-38	55.77	Ribosome biogenesis protein NEP1-like, putative OS=Theobroma cacao GN=TCM_008267...	[more]
A0A059BBM6_EUCGR	7.6e-37	51.90	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01269 PE=4 SV=1	[more]

BLAST of Cla007088 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659119944\|ref\|XP_008459927.1\|	9.4e-73	84.88	PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]	[more]
gi\|778711712\|ref\|XP_004140656.2\|	1.8e-71	83.82	PREDICTED: uncharacterized protein LOC101206372 [Cucumis sativus]	[more]
gi\|307135822\|gb\|ADN33694.1\|	3.8e-66	85.81	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703126148\|ref\|XP_010103496.1\|	5.4e-44	61.78	hypothetical protein L484_017004 [Morus notabilis]	[more]
gi\|590691257\|ref\|XP_007043735.1\|	2.0e-38	55.77	Ribosome biogenesis protein NEP1-like, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla007088	Cla007088.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919	FAMILY NOT NAMED	coord: 1..169 score: 4.4
None	No IPR available	PANTHER	PTHR33919:SF3	SUBFAMILY NOT NAMED	coord: 1..169 score: 4.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla007088	Cla97C06G110960	Watermelon (97103) v2	wmwmbB407
Cla007088	Csa6G091280	Cucumber (Chinese Long) v2	cuwmB537
Cla007088	MELO3C022364	Melon (DHL92) v3.5.1	mewmB140
Cla007088	ClCG06G001670	Watermelon (Charleston Gray)	wcgwmB345
Cla007088	CSPI06G07290	Wild cucumber (PI 183967)	cpiwmB556
Cla007088	Cucsa.349160	Cucumber (Gy14) v1	cgywmB626
Cla007088	CmaCh08G000260	Cucurbita maxima (Rimu)	cmawmB879
Cla007088	CmoCh08G000300	Cucurbita moschata (Rifu)	cmowmB868
Cla007088	Lsi09G017740	Bottle gourd (USVL1VR-Ls)	lsiwmB041
Cla007088	Cp4.1LG17g09470	Cucurbita pepo (Zucchini)	cpewmB341
Cla007088	CsGy6G007300	Cucumber (Gy14) v2	cgybwmB501
Cla007088	MELO3C022364.2	Melon (DHL92) v3.6.1	medwmB138
Cla007088	Carg03802	Silver-seed gourd	carwmB0986
Cla007088	CsaV3_6G007690	Cucumber (Chinese Long) v3	cucwmB562
Cla007088	Bhi12G002118	Wax gourd	wgowmB092

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla007088	Silver-seed gourd	carwmB0015
Cla007088	Watermelon (97103) v1	wmwmB167
Cla007088	Cucurbita maxima (Rimu)	cmawmB352
Cla007088	Cucurbita moschata (Rifu)	cmowmB347
Cla007088	Cucurbita pepo (Zucchini)	cpewmB156