Cucsa.349160 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.349160
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	NADH-ubiquinone reductase complex 1 MLRQ subunit
Location	scaffold03487 : 468837 .. 469574 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAAGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTTCTTCATCCACTACAACCCCATCTGCCAATAATATTCAGAATGCTTCTTCTCCTTCTTCTTCTTCCAAGTTAATAAACAAAAAACCCATTTCGTTGTATATGTAATTAATTGATTAATTTTTTATGAGATAATATGATTAATGTGTGTACAGTGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCAGTGGTCGTGTCTATCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCAGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGACGCTATCCGATCCAGTTCATCCCGACCCATTTACCCGGTGAACGTCTCTTTGATCCTAGTTTACTTATTTTTACAGTGTGTTGATGTAATATTAAACTTACATTATTAACGTATTACTATTCAAGATCAAGTTTATATTTCAACAAATTAAAATGGTTGAATGGAAATTAAGAATACTAATGTACTGCATGGGTGCACTTGTGTATTACAGGCCACGTAATGCTGAAACTCTGAAAACTGCTGGAATTGACCCTACCCGCCGTTGA

mRNA sequence

AATAAGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTTCTTCATCCACTACAACCCCATCTGCCAATAATATTCAGAATGCTTCTTCTCCTTCTTCTTCTTCCAATGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCAGTGGTCGTGTCTATCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCAGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGACGCTATCCGATCCAGTTCATCCCGACCCATTTACCCGGCCACGTAATGCTGAAACTCTGAAAACTGCTGGAATTGACCCTACCCGCCGTTGA

Coding sequence (CDS)

AATAAGATGTGGAAATCAATGCTTGTCGAAACTAGGATCCAAGGGAACCGTCGTTTTTCTTCATCCACTACAACCCCATCTGCCAATAATATTCAGAATGCTTCTTCTCCTTCTTCTTCTTCCAATGGCGGTTCCGGTGGGAGTGAGTACATGAAAGGCGAGTACGCCCCAATCTACATTGTGATGGGGATGGTGGCAGTGGTCGTGTCTATCGCAACCCACACGGCGAAGCAACAACTGCTGCATTCGCCGATGGTTAACTGTAGCAAGAAGAAGAGGGAGAGCATTCCGGAGGTGGAGGACCCCGACACCGTCATCACTTCAGCTGACAAATTTATTAACAAATCCTTTCTTAGGAAGGTTGCTCACATTCAGAGTGACACGAAGACGCTATCCGATCCAGTTCATCCCGACCCATTTACCCGGCCACGTAATGCTGAAACTCTGAAAACTGCTGGAATTGACCCTACCCGCCGTTGA

Protein sequence

NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR*

Homology

[Close]

BLAST of Cucsa.349160 vs. TrEMBL
Match: A0A0A0KC39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091280 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 4.5e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI 60
           NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI
Sbjct: 10  NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI 69

Query: 61  VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK 120
           VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK
Sbjct: 70  VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK 129

Query: 121 VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 160
           VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR
Sbjct: 130 VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Cucsa.349160 vs. TrEMBL
Match: E5GB52_CUCME (Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-69
Identity = 139/153 (90.85%), Postives = 142/153 (92.81%), Query Frame = 1


Query: 7   MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVA 66
           MLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVA
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANA---SSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVA 60

Query: 67  VVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQS 126
           VVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ 
Sbjct: 61  VVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD 120

Query: 127 DTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 160
           DTKTL DPVH DPFTRPRNAETLKTAG+DPTRR
Sbjct: 121 DTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Cucsa.349160 vs. TrEMBL
Match: W9RLB6_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_017004 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-43
Identity = 96/155 (61.94%), Postives = 117/155 (75.48%), Query Frame = 1


Query: 4   WKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMG 63
           W+SML   R+  +R F +ST  P       A+  ++ S   +  +  MKGE+APIY+VMG
Sbjct: 9   WRSMLA--RLGSDRPFVTSTA-PKLKTF-TATFDAAHSAQSNFRALAMKGEFAPIYMVMG 68

Query: 64  MVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAH 123
           MV V V+IATHTAKQQLLHSP VN +KKKRE++PEV+DPD VI+SADKF+NKSFLRKVAH
Sbjct: 69  MVVVAVTIATHTAKQQLLHSPAVNINKKKRETMPEVDDPDGVISSADKFVNKSFLRKVAH 128

Query: 124 IQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTR 159
           IQ    TL DPV P+PFTRPRNAETLKT G+DP+R
Sbjct: 129 IQDHNPTLRDPVRPNPFTRPRNAETLKTVGVDPSR 159

[Close]

BLAST of Cucsa.349160 vs. TrEMBL
Match: A0A061E5D3_THECC (Ribosome biogenesis protein NEP1-like, putative OS=Theobroma cacao GN=TCM_008267 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-38
Identity = 85/155 (54.84%), Postives = 111/155 (71.61%), Query Frame = 1


Query: 4   WKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEY-MKGEYAPIYIVM 63
           WKSM+       +R F+SSTT      ++  S+ +++++     ++Y + GEYAP+YIVM
Sbjct: 106 WKSMITPLGRTHSRSFASSTTP----KLKQYSTTANAAHNPRPYNKYSISGEYAPVYIVM 165

Query: 64  GMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVA 123
           GM+ V +SIA HTAKQ L+H+P V  SKKKRESI E + PD  + SADKF+NKSFLRKVA
Sbjct: 166 GMLVVAISIAAHTAKQHLMHAPGVVISKKKRESISEADHPDQALASADKFLNKSFLRKVA 225

Query: 124 HIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPT 158
           HIQ + +TL DP  PDPFTRPR AETLKT G+DP+
Sbjct: 226 HIQDNKRTLPDPSRPDPFTRPRTAETLKTVGVDPS 256

[Close]

BLAST of Cucsa.349160 vs. TrEMBL
Match: A0A059BBM6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01269 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 6.6e-35
Identity = 79/156 (50.64%), Postives = 110/156 (70.51%), Query Frame = 1


Query: 4   WKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMG 63
           W+SML  +R   + R  ++ T P    +  A++ ++ S+     S  ++GEYAP+ +V  
Sbjct: 9   WRSML--SRAGASHRSFATATKPK---MFAATAGATHSDHHHERSSLLRGEYAPVGMVFA 68

Query: 64  MVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAH 123
           M+ V ++I  HT KQQL HSP V  SKKKRE++PEV+DPD+V+ SADKF+NKSFLRKVAH
Sbjct: 69  MLLVAMTIGMHTMKQQLAHSPGVRVSKKKRETVPEVDDPDSVVRSADKFLNKSFLRKVAH 128

Query: 124 IQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 160
           IQ + +TL DPV  +P+ +PR AETLK AG++PTRR
Sbjct: 129 IQENKRTLPDPVRANPYAKPREAETLKMAGVNPTRR 159

[Close]

BLAST of Cucsa.349160 vs. TAIR10
Match: AT1G63060.1 (AT1G63060.1 unknown protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-27
Identity = 64/149 (42.95%), Postives = 91/149 (61.07%), Query Frame = 1


Query: 9   VETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVV 68
           V  +  G+RRF++ T    A    N  S              + GE+AP+ I+ G V + 
Sbjct: 12  VGNQFGGSRRFAT-TVADGAKQTYNKFS--------------IMGEFAPVAIIGGFVGLA 71

Query: 69  VSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDT 128
           V +A H+ KQQL+H+P ++  K +R ++ EV+DP+  ++SADKFINKS+LRKV  IQ  +
Sbjct: 72  VLMAGHSLKQQLMHAPAISTRKNRRAAVAEVDDPENCVSSADKFINKSWLRKVGQIQDKS 131

Query: 129 KT-LSDPVHPDPFTRPRNAETLKTAGIDP 157
           K  LSDP  P+PFT PRNAETL + G+ P
Sbjct: 132 KAILSDPTRPNPFTTPRNAETLNSVGVAP 145

[Close]

BLAST of Cucsa.349160 vs. TAIR10
Match: AT5G07330.1 (AT5G07330.1 unknown protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.8e-23
Identity = 51/146 (34.93%), Postives = 85/146 (58.22%), Query Frame = 1


Query: 13  IQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVAVVVSIA 72
           +Q  R ++ +TT P +     A++        +  +   KG++ P+Y+ +G++++ V+  
Sbjct: 13  VQRLRTYTKATTVPRSKAYSTAATEYGGQRTATTAAA-TKGDFTPVYVSIGLISLSVTFG 72

Query: 73  THTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQSDTK--T 132
            +TA   L  +P V  +KK RE++PE+EDPD V+  AD+F N+S+ RK+AH+Q   K   
Sbjct: 73  VYTAYLHLHENPGVRVNKKMRETVPEIEDPDRVLNEADRFANRSWFRKIAHVQEFDKQDV 132

Query: 133 LSDPVHPDPFTRPRNAETLKTAGIDP 157
           +SDP+  D F     A TLK  G+DP
Sbjct: 133 ISDPIRKDQFAHKPRALTLKDVGVDP 157

[Close]

BLAST of Cucsa.349160 vs. NCBI nr
Match: gi|778711712|ref|XP_004140656.2| (PREDICTED: uncharacterized protein LOC101206372 [Cucumis sativus])

HSP 1 Score: 318.5 bits (815), Expect = 6.5e-84
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1


Query: 1   NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI 60
           NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI
Sbjct: 10  NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI 69

Query: 61  VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK 120
           VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK
Sbjct: 70  VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK 129

Query: 121 VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 160
           VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR
Sbjct: 130 VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 168

[Close]

BLAST of Cucsa.349160 vs. NCBI nr
Match: gi|659119944|ref|XP_008459927.1| (PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73
Identity = 145/159 (91.19%), Postives = 148/159 (93.08%), Query Frame = 1


Query: 1   NKMWKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYI 60
           NKMWKSMLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYI
Sbjct: 10  NKMWKSMLVGTRIQGNRRFASSTTAPSANA---SSSSSSSSKGGSGGSEYMKGEYAPIYI 69

Query: 61  VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK 120
           VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK
Sbjct: 70  VMGMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRK 129

Query: 121 VAHIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 160
           VAHIQ DTKTL DPVH DPFTRPRNAETLKTAG+DPTRR
Sbjct: 130 VAHIQDDTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 165

[Close]

BLAST of Cucsa.349160 vs. NCBI nr
Match: gi|307135822|gb|ADN33694.1| (hypothetical protein [Cucumis melo subsp. melo])

HSP 1 Score: 270.4 bits (690), Expect = 2.0e-69
Identity = 139/153 (90.85%), Postives = 142/153 (92.81%), Query Frame = 1


Query: 7   MLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMGMVA 66
           MLV TRIQGNRRF+SSTT PSAN    +SS SSSS GGSGGSEYMKGEYAPIYIVMGMVA
Sbjct: 1   MLVGTRIQGNRRFASSTTAPSANA---SSSSSSSSKGGSGGSEYMKGEYAPIYIVMGMVA 60

Query: 67  VVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQS 126
           VVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQ 
Sbjct: 61  VVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAHIQD 120

Query: 127 DTKTLSDPVHPDPFTRPRNAETLKTAGIDPTRR 160
           DTKTL DPVH DPFTRPRNAETLKTAG+DPTRR
Sbjct: 121 DTKTLPDPVHLDPFTRPRNAETLKTAGVDPTRR 150

[Close]

BLAST of Cucsa.349160 vs. NCBI nr
Match: gi|703126148|ref|XP_010103496.1| (hypothetical protein L484_017004 [Morus notabilis])

HSP 1 Score: 182.2 bits (461), Expect = 7.2e-43
Identity = 96/155 (61.94%), Postives = 117/155 (75.48%), Query Frame = 1


Query: 4   WKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEYMKGEYAPIYIVMG 63
           W+SML   R+  +R F +ST  P       A+  ++ S   +  +  MKGE+APIY+VMG
Sbjct: 9   WRSMLA--RLGSDRPFVTSTA-PKLKTF-TATFDAAHSAQSNFRALAMKGEFAPIYMVMG 68

Query: 64  MVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVAH 123
           MV V V+IATHTAKQQLLHSP VN +KKKRE++PEV+DPD VI+SADKF+NKSFLRKVAH
Sbjct: 69  MVVVAVTIATHTAKQQLLHSPAVNINKKKRETMPEVDDPDGVISSADKFVNKSFLRKVAH 128

Query: 124 IQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPTR 159
           IQ    TL DPV P+PFTRPRNAETLKT G+DP+R
Sbjct: 129 IQDHNPTLRDPVRPNPFTRPRNAETLKTVGVDPSR 159

[Close]

BLAST of Cucsa.349160 vs. NCBI nr
Match: gi|590691257|ref|XP_007043735.1| (Ribosome biogenesis protein NEP1-like, putative [Theobroma cacao])

HSP 1 Score: 167.5 bits (423), Expect = 1.8e-38
Identity = 85/155 (54.84%), Postives = 111/155 (71.61%), Query Frame = 1


Query: 4   WKSMLVETRIQGNRRFSSSTTTPSANNIQNASSPSSSSNGGSGGSEY-MKGEYAPIYIVM 63
           WKSM+       +R F+SSTT      ++  S+ +++++     ++Y + GEYAP+YIVM
Sbjct: 106 WKSMITPLGRTHSRSFASSTTP----KLKQYSTTANAAHNPRPYNKYSISGEYAPVYIVM 165

Query: 64  GMVAVVVSIATHTAKQQLLHSPMVNCSKKKRESIPEVEDPDTVITSADKFINKSFLRKVA 123
           GM+ V +SIA HTAKQ L+H+P V  SKKKRESI E + PD  + SADKF+NKSFLRKVA
Sbjct: 166 GMLVVAISIAAHTAKQHLMHAPGVVISKKKRESISEADHPDQALASADKFLNKSFLRKVA 225

Query: 124 HIQSDTKTLSDPVHPDPFTRPRNAETLKTAGIDPT 158
           HIQ + +TL DP  PDPFTRPR AETLKT G+DP+
Sbjct: 226 HIQDNKRTLPDPSRPDPFTRPRTAETLKTVGVDPS 256

The following BLAST results are available for this feature:

BLAST of Cucsa.349160 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC39_CUCSA	4.5e-84	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091280 PE=4 SV=1	[more]
E5GB52_CUCME	1.4e-69	90.85	Putative uncharacterized protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
W9RLB6_9ROSA	5.0e-43	61.94	Uncharacterized protein OS=Morus notabilis GN=L484_017004 PE=4 SV=1	[more]
A0A061E5D3_THECC	1.3e-38	54.84	Ribosome biogenesis protein NEP1-like, putative OS=Theobroma cacao GN=TCM_008267...	[more]
A0A059BBM6_EUCGR	6.6e-35	50.64	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01269 PE=4 SV=1	[more]

BLAST of Cucsa.349160 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G63060.1	1.6e-27	42.95	unknown protein	[more]
AT5G07330.1	1.8e-23	34.93	unknown protein	[more]

BLAST of Cucsa.349160 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778711712\|ref\|XP_004140656.2\|	6.5e-84	100.00	PREDICTED: uncharacterized protein LOC101206372 [Cucumis sativus]	[more]
gi\|659119944\|ref\|XP_008459927.1\|	1.4e-73	91.19	PREDICTED: uncharacterized protein LOC103498899 [Cucumis melo]	[more]
gi\|307135822\|gb\|ADN33694.1\|	2.0e-69	90.85	hypothetical protein [Cucumis melo subsp. melo]	[more]
gi\|703126148\|ref\|XP_010103496.1\|	7.2e-43	61.94	hypothetical protein L484_017004 [Morus notabilis]	[more]
gi\|590691257\|ref\|XP_007043735.1\|	1.8e-38	54.84	Ribosome biogenesis protein NEP1-like, putative [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.349160.1	Cucsa.349160.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33919	FAMILY NOT NAMED	coord: 3..156 score: 1.4
None	No IPR available	PANTHER	PTHR33919:SF3	SUBFAMILY NOT NAMED	coord: 3..156 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.349160	Cla007088	Watermelon (97103) v1	cgywmB626
Cucsa.349160	Csa6G091280	Cucumber (Chinese Long) v2	cgycuB490
Cucsa.349160	MELO3C022364	Melon (DHL92) v3.5.1	cgymeB564
Cucsa.349160	ClCG06G001670	Watermelon (Charleston Gray)	cgywcgB595
Cucsa.349160	CSPI06G07290	Wild cucumber (PI 183967)	cgycpiB517
Cucsa.349160	CmaCh08G000260	Cucurbita maxima (Rimu)	cgycmaB0955
Cucsa.349160	CmoCh08G000300	Cucurbita moschata (Rifu)	cgycmoB0955
Cucsa.349160	Lsi09G017740	Bottle gourd (USVL1VR-Ls)	cgylsiB562
Cucsa.349160	Cp4.1LG17g09470	Cucurbita pepo (Zucchini)	cgycpeB0911
Cucsa.349160	MELO3C022364.2	Melon (DHL92) v3.6.1	cgymedB565
Cucsa.349160	CsaV3_6G007690	Cucumber (Chinese Long) v3	cgycucB532
Cucsa.349160	Cla97C06G110960	Watermelon (97103) v2	cgywmbB596
Cucsa.349160	Bhi12G002118	Wax gourd	cgywgoB696
Cucsa.349160	Carg03802	Silver-seed gourd	carcgyB1099

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.349160	Cucurbita maxima (Rimu)	cgycmaB0951
Cucsa.349160	Cucurbita moschata (Rifu)	cgycmoB0951
Cucsa.349160	Cucurbita pepo (Zucchini)	cgycpeB0907
Cucsa.349160	Silver-seed gourd	carcgyB0012