Lsi09G017700 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G017700
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ethylene-responsive transcription factor
Location	chr09 : 26473043 .. 26474152 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGTTTGGCCACTACCCATGCCTTGTTTTTTCAATCTTTTTTTGGTTTTGGTTTTGGTTTTGGTATAAAATATATTAACTAAACAATTGAAATTCAACATTATTTAAACGGGTAAATTAAAGAGTGCAAATAAAAAGGTAGGGATTGATGCATGTTACGTTAGAGAATTTGGTCACGGGCACGGCCACACACGGCCACCGACTTTTGTATTTATTAATATCTTCTTTTTTTTTCTTTTCTTTTTTGTGGTGCATGGAAAGGTTTAGGAAATGAAGAACATGGGGGAGGTGTAGGAGAGAGAGATGTGTCAATGCCATGTGTGTTCATGCTTCTTTTATTTGTTTATTATACTAAAATATGTTACGAAGAGAAAAGCCCGATACAATGTGNTGCGACGGTGTTTTGGAATAATTTCTCACATACAATAGAATATTATATATATAGAGAGAGGGAGCTAGGTCTAGTGCACATGCAGGCATTTAAATAATATAGCAATATGGAGAGATATTGTTTATTATAAAGGTGTTATGATTTATATATGTGTGTATATGTATATGTGTATGTGATGGCAGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGTGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTAAGATTTAAAGGAACCAAAGCCAAGCTTAATTTTCCTGAACGAGTTCAAGCCAATCCTGCTGACTTTGGCTTTCTTCCCTCCGCCACCGCCGCTGCTTCTTCTGCTGCTCCACCTCCCCCAGCCACCGTGGCTTCATTTTCATTGCCTTCTGTTTCTCTTCCGCCGCCGTTGTCAGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAACCCCATTATCCTTCTTCTTCTCATACTCAACAACACCAACAAGATCAGGATCACTACGGCAAAGGTTTCGGCACCGGTGGCTCACCCAATTAG

mRNA sequence

ATGGCTTGTTTGGCCACTACCCATGCCTTGTTTTTTCAATCTTTTTTTGGTTTTGGTTTTGGTTTTGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGTGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTAAGATTTAAAGGAACCAAAGCCAAGCTTAATTTTCCTGAACGAGTTCAAGCCAATCCTGCTGACTTTGGCTTTCTTCCCTCCGCCACCGCCGCTGCTTCTTCTGCTGCTCCACCTCCCCCAGCCACCGTGGCTTCATTTTCATTGCCTTCTGTTTCTCTTCCGCCGCCGTTGTCAGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAACCCCATTATCCTTCTTCTTCTCATACTCAACAACACCAACAAGATCAGGATCACTACGGCAAAGGTTTCGGCACCGGTGGCTCACCCAATTAG

Coding sequence (CDS)

ATGGCTTGTTTGGCCACTACCCATGCCTTGTTTTTTCAATCTTTTTTTGGTTTTGGTTTTGGTTTTGAAACAGAAAGTGGGAGGAAGCGTCATTATAGAGGTGTAAGACAAAGACCATGGGGAAAATGGGCAGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACTGCCGAGGCTGCTGCCATTGCTTATGATAACGCCGCTTTAAGATTTAAAGGAACCAAAGCCAAGCTTAATTTTCCTGAACGAGTTCAAGCCAATCCTGCTGACTTTGGCTTTCTTCCCTCCGCCACCGCCGCTGCTTCTTCTGCTGCTCCACCTCCCCCAGCCACCGTGGCTTCATTTTCATTGCCTTCTGTTTCTCTTCCGCCGCCGTTGTCAGAGGAAGAAGCTTTCCCTGGACTTCATCAGTACGCTCAACTTCTCTCTAGCACCGACGCTGATTTCCCTTATTATTCTTCCACTCTTCTTCTCAACCAACAACAACCCCATTATCCTTCTTCTTCTCATACTCAACAACACCAACAAGATCAGGATCACTACGGCAAAGGTTTCGGCACCGGTGGCTCACCCAATTAG

Protein sequence

MACLATTHALFFQSFFGFGFGFETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQQPHYPSSSHTQQHQQDQDHYGKGFGTGGSPN

Homology

[Close]

BLAST of Lsi09G017700 vs. Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.7e-33
Identity = 88/164 (53.66%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           + +  R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AA+AYD AAL+FKGTK
Sbjct: 30  DQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTK 89

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGL 142
           AKLNFPERVQ  P     +  A    S +   PP      S  + S P   +++     +
Sbjct: 90  AKLNFPERVQ-GPTTTTTISHAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQD-----I 149

Query: 143 HQYAQLL-SSTDADFPYYSSTLLLNQQQPHYPSSSHTQQHQQDQ 186
            QYAQLL S+ + D  YY+STL          SSS +QQ QQ Q
Sbjct: 150 LQYAQLLTSNNEVDLSYYTSTLFSQPFSTPSSSSSSSQQTQQQQ 187

[Close]

BLAST of Lsi09G017700 vs. Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.6e-29
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 28  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 87
           R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE+AA+AYD AAL+FKG+KAKLNF
Sbjct: 86  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Query: 88  PERVQ 93
           PERVQ
Sbjct: 146 PERVQ 150

[Close]

BLAST of Lsi09G017700 vs. Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=1 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 4.1e-27
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 28  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 87
           RKRHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEAAA+AYDNAAL+FKG+KAKLNF
Sbjct: 88  RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147

Query: 88  PERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQY 146
           PER Q             A+ +S    PP   +S +   +    P +  +  P  +QY
Sbjct: 148 PERAQ------------LASNTSTTTGPPNYYSSNN--QIYYSNPQTNPQTIPYFNQY 191

[Close]

BLAST of Lsi09G017700 vs. Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.4e-26
Identity = 76/161 (47.20%), Postives = 93/161 (57.76%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           E  + R+R+YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AA+AYD AA  F+G K
Sbjct: 61  EKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHK 120

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGL 142
           AKLNFPE ++ NP      P+ +       PP P             PPP++ +     L
Sbjct: 121 AKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSP-------------PPPIAPDIL---L 180

Query: 143 HQYAQLLS-STDADFPYYSSTLLLNQQQPHYPSSSHTQQHQ 183
            QY    S S+D+     S+ L +N       SSS +  HQ
Sbjct: 181 DQYGHFQSRSSDS-----SANLSMNM----LSSSSSSLNHQ 196

[Close]

BLAST of Lsi09G017700 vs. Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 118.6 bits (296), Expect = 7.6e-26
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 28  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 87
           +KR YRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAEAAA AYD AALRF+G KAKLNF
Sbjct: 73  KKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132

Query: 88  PERVQANP 96
           PE V+  P
Sbjct: 133 PEDVRILP 140

[Close]

BLAST of Lsi09G017700 vs. TrEMBL
Match: A0A0A0K9G5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091830 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 146/177 (82.49%), Postives = 155/177 (87.57%), Query Frame = 1


Query: 25  ESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 84
           +SGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 20  QSGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 79

Query: 85  LNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQ 144
           LNFPERVQANPA+FGFL    + AS AAPPPP  V+S   PSVSLPPPLS EEAFPGLHQ
Sbjct: 80  LNFPERVQANPAEFGFL----SPASIAAPPPPTAVSS---PSVSLPPPLSHEEAFPGLHQ 139

Query: 145 YAQLLSSTDADFPYYSSTLLLNQQQPHYP----SSSHTQQHQQDQDHYGKGFGTGGS 198
           YAQLLSS+DADFPYYSS+LL NQQQ HYP    SSS +QQ Q+DQD YG+ FGTGGS
Sbjct: 140 YAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSSQQQQEDQDRYGEDFGTGGS 189

[Close]

BLAST of Lsi09G017700 vs. TrEMBL
Match: E5GB56_CUCME (AP2 domain transcription factor RAP2 OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 5.1e-69
Identity = 143/177 (80.79%), Postives = 152/177 (85.88%), Query Frame = 1


Query: 25  ESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 84
           + GRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 81  QGGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 140

Query: 85  LNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQ 144
           LNFPERVQANPA+FGFL    +  S AAPPPP  V+S   PSVSLPPPLS EE FPGLHQ
Sbjct: 141 LNFPERVQANPAEFGFL----SPPSIAAPPPPTAVSS---PSVSLPPPLSHEEVFPGLHQ 200

Query: 145 YAQLLSSTDADFPYYSSTLLLNQQQPHYP----SSSHTQQHQQDQDHYGKGFGTGGS 198
           YAQLLSS+DADFPYYSS+LL NQQQ HYP    SSS +QQ Q+DQD YG+ FGTGGS
Sbjct: 201 YAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSSQQQQEDQDRYGEDFGTGGS 250

[Close]

BLAST of Lsi09G017700 vs. TrEMBL
Match: R9QAL1_JATCU (AP2/ERF transcription factor OS=Jatropha curcas GN=AP2 PE=2 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 2.2e-43
Identity = 104/169 (61.54%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           + E+ R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYD AAL+FKGTK
Sbjct: 47  DQENTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTK 106

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSL--PPPLSEEEAFP 142
           AKLNFPERVQ  P    F+ S+  ++S+ AP      A+ S PS     PPP   +EA+P
Sbjct: 107 AKLNFPERVQGKPEFSYFMTSSGDSSSALAPEQNPMAAAASAPSRHYLPPPPSFPQEAYP 166

Query: 143 GLHQYAQLLSSTDADFPYYSSTLLLNQQQ---PHYPSSSHTQQHQQDQD 187
            L QYAQ+LSS DA+F YY+S  L NQQ    P+Y S+  +QQHQQ Q+
Sbjct: 167 DLLQYAQILSSNDANFQYYTSN-LFNQQSYAPPYYSSTFSSQQHQQQQE 214

[Close]

BLAST of Lsi09G017700 vs. TrEMBL
Match: B9RG00_RICCO (AP2 domain transcription factor RAP2.3, putative OS=Ricinus communis GN=RCOM_1438370 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 7.7e-41
Identity = 106/176 (60.23%), Postives = 124/176 (70.45%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           + E+ R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYD AAL+FKGTK
Sbjct: 48  DQENTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTK 107

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAP-------PPPATVASFSLPSVSLPPPLSE 142
           AKLNFPERVQ  P    F+ ++  ++SS +P        PPA+  S+  P    PPP   
Sbjct: 108 AKLNFPERVQGKPEFSYFMTTSGDSSSSISPGQNPMLMAPPAS--SYLPPP---PPPSFP 167

Query: 143 EEAFPGLHQYAQLLSSTDADFPYYSSTLLLNQQ--QPHYPSS--SHTQQHQQDQDH 188
           +E +P L QYAQ+LSSTDA FPYY+S  L NQQ   PHY S+  S T   QQ Q H
Sbjct: 168 QETYPDLLQYAQILSSTDASFPYYTSN-LFNQQPYTPHYSSNEPSSTFLSQQQQQH 217

[Close]

BLAST of Lsi09G017700 vs. TrEMBL
Match: M5XU38_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011097mg PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.3e-40
Identity = 108/182 (59.34%), Postives = 122/182 (67.03%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           E E+ R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AAIAYDNAALRFKGTK
Sbjct: 48  EQETVRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAIAYDNAALRFKGTK 107

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGL 142
           AKLNFPERVQ    DFG L + +A++   A PP A       PS++  P     E FP L
Sbjct: 108 AKLNFPERVQGK-TDFGMLMATSASSGVVAHPPAA-------PSMAPQP-----ETFPDL 167

Query: 143 HQYAQLLSSTDADFPYYSSTLLLNQQQP----------HYPSSSHTQ----QHQQDQDHY 191
           +QYAQLLS  D DF Y+SS  L N Q P          H+ SS+ +Q    Q Q DQD  
Sbjct: 168 YQYAQLLSGNDIDFSYHSSN-LFNHQDPFGSQISSPTTHFSSSNASQPPQRQQQDDQDED 215

[Close]

BLAST of Lsi09G017700 vs. TAIR10
Match: AT5G13330.1 (AT5G13330.1 related to AP2 6l)

HSP 1 Score: 144.1 bits (362), Expect = 9.6e-35
Identity = 88/164 (53.66%), Postives = 105/164 (64.02%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           + +  R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AA+AYD AAL+FKGTK
Sbjct: 30  DQDQPRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTK 89

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGL 142
           AKLNFPERVQ  P     +  A    S +   PP      S  + S P   +++     +
Sbjct: 90  AKLNFPERVQ-GPTTTTTISHAPRGVSESMNSPPPRPGPPSTTTTSWPMTYNQD-----I 149

Query: 143 HQYAQLL-SSTDADFPYYSSTLLLNQQQPHYPSSSHTQQHQQDQ 186
            QYAQLL S+ + D  YY+STL          SSS +QQ QQ Q
Sbjct: 150 LQYAQLLTSNNEVDLSYYTSTLFSQPFSTPSSSSSSSQQTQQQQ 187

[Close]

BLAST of Lsi09G017700 vs. TAIR10
Match: AT5G61890.1 (AT5G61890.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 5.4e-30
Identity = 58/65 (89.23%), Postives = 64/65 (98.46%), Query Frame = 1


Query: 28  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 87
           R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE+AA+AYD AAL+FKG+KAKLNF
Sbjct: 86  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Query: 88  PERVQ 93
           PERVQ
Sbjct: 146 PERVQ 150

[Close]

BLAST of Lsi09G017700 vs. TAIR10
Match: AT5G07310.1 (AT5G07310.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 122.9 bits (307), Expect = 2.3e-28
Identity = 68/118 (57.63%), Postives = 81/118 (68.64%), Query Frame = 1


Query: 28  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 87
           RKRHYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEAAA+AYDNAAL+FKG+KAKLNF
Sbjct: 88  RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147

Query: 88  PERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQY 146
           PER Q             A+ +S    PP   +S +   +    P +  +  P  +QY
Sbjct: 148 PERAQ------------LASNTSTTTGPPNYYSSNN--QIYYSNPQTNPQTIPYFNQY 191

[Close]

BLAST of Lsi09G017700 vs. TAIR10
Match: AT2G33710.2 (AT2G33710.2 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.9e-27
Identity = 76/161 (47.20%), Postives = 93/161 (57.76%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           E  + R+R+YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AA+AYD AA  F+G K
Sbjct: 61  EKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHK 120

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGL 142
           AKLNFPE ++ NP      P+ +       PP P             PPP++ +     L
Sbjct: 121 AKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSP-------------PPPIAPDIL---L 180

Query: 143 HQYAQLLS-STDADFPYYSSTLLLNQQQPHYPSSSHTQQHQ 183
            QY    S S+D+     S+ L +N       SSS +  HQ
Sbjct: 181 DQYGHFQSRSSDS-----SANLSMNM----LSSSSSSLNHQ 196

[Close]

BLAST of Lsi09G017700 vs. TAIR10
Match: AT5G50080.1 (AT5G50080.1 ethylene response factor 110)

HSP 1 Score: 118.6 bits (296), Expect = 4.3e-27
Identity = 56/68 (82.35%), Postives = 60/68 (88.24%), Query Frame = 1


Query: 28  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 87
           +KR YRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAEAAA AYD AALRF+G KAKLNF
Sbjct: 73  KKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNF 132

Query: 88  PERVQANP 96
           PE V+  P
Sbjct: 133 PEDVRILP 140

[Close]

BLAST of Lsi09G017700 vs. NCBI nr
Match: gi|778722055|ref|XP_011658395.1| (PREDICTED: ethylene-responsive transcription factor ERF113 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-70
Identity = 146/177 (82.49%), Postives = 155/177 (87.57%), Query Frame = 1


Query: 25  ESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 84
           +SGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 124 QSGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 183

Query: 85  LNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQ 144
           LNFPERVQANPA+FGFL    + AS AAPPPP  V+S   PSVSLPPPLS EEAFPGLHQ
Sbjct: 184 LNFPERVQANPAEFGFL----SPASIAAPPPPTAVSS---PSVSLPPPLSHEEAFPGLHQ 243

Query: 145 YAQLLSSTDADFPYYSSTLLLNQQQPHYP----SSSHTQQHQQDQDHYGKGFGTGGS 198
           YAQLLSS+DADFPYYSS+LL NQQQ HYP    SSS +QQ Q+DQD YG+ FGTGGS
Sbjct: 244 YAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSSQQQQEDQDRYGEDFGTGGS 293

[Close]

BLAST of Lsi09G017700 vs. NCBI nr
Match: gi|700191206|gb|KGN46410.1| (hypothetical protein Csa_6G091830 [Cucumis sativus])

HSP 1 Score: 273.9 bits (699), Expect = 2.3e-70
Identity = 146/177 (82.49%), Postives = 155/177 (87.57%), Query Frame = 1


Query: 25  ESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 84
           +SGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 20  QSGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 79

Query: 85  LNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQ 144
           LNFPERVQANPA+FGFL    + AS AAPPPP  V+S   PSVSLPPPLS EEAFPGLHQ
Sbjct: 80  LNFPERVQANPAEFGFL----SPASIAAPPPPTAVSS---PSVSLPPPLSHEEAFPGLHQ 139

Query: 145 YAQLLSSTDADFPYYSSTLLLNQQQPHYP----SSSHTQQHQQDQDHYGKGFGTGGS 198
           YAQLLSS+DADFPYYSS+LL NQQQ HYP    SSS +QQ Q+DQD YG+ FGTGGS
Sbjct: 140 YAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSSQQQQEDQDRYGEDFGTGGS 189

[Close]

BLAST of Lsi09G017700 vs. NCBI nr
Match: gi|659120432|ref|XP_008460191.1| (PREDICTED: ethylene-responsive transcription factor ERF113-like [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 7.3e-69
Identity = 143/177 (80.79%), Postives = 152/177 (85.88%), Query Frame = 1


Query: 25  ESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 84
           + GRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 76  QGGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 135

Query: 85  LNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQ 144
           LNFPERVQANPA+FGFL    +  S AAPPPP  V+S   PSVSLPPPLS EE FPGLHQ
Sbjct: 136 LNFPERVQANPAEFGFL----SPPSIAAPPPPTAVSS---PSVSLPPPLSHEEVFPGLHQ 195

Query: 145 YAQLLSSTDADFPYYSSTLLLNQQQPHYP----SSSHTQQHQQDQDHYGKGFGTGGS 198
           YAQLLSS+DADFPYYSS+LL NQQQ HYP    SSS +QQ Q+DQD YG+ FGTGGS
Sbjct: 196 YAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSSQQQQEDQDRYGEDFGTGGS 245

[Close]

BLAST of Lsi09G017700 vs. NCBI nr
Match: gi|307135826|gb|ADN33698.1| (AP2 domain transcription factor RAP2 [Cucumis melo subsp. melo])

HSP 1 Score: 268.9 bits (686), Expect = 7.3e-69
Identity = 143/177 (80.79%), Postives = 152/177 (85.88%), Query Frame = 1


Query: 25  ESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 84
           + GRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 81  QGGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 140

Query: 85  LNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSLPPPLSEEEAFPGLHQ 144
           LNFPERVQANPA+FGFL    +  S AAPPPP  V+S   PSVSLPPPLS EE FPGLHQ
Sbjct: 141 LNFPERVQANPAEFGFL----SPPSIAAPPPPTAVSS---PSVSLPPPLSHEEVFPGLHQ 200

Query: 145 YAQLLSSTDADFPYYSSTLLLNQQQPHYP----SSSHTQQHQQDQDHYGKGFGTGGS 198
           YAQLLSS+DADFPYYSS+LL NQQQ HYP    SSS +QQ Q+DQD YG+ FGTGGS
Sbjct: 201 YAQLLSSSDADFPYYSSSLLFNQQQSHYPFFSSSSSSSQQQQEDQDRYGEDFGTGGS 250

[Close]

BLAST of Lsi09G017700 vs. NCBI nr
Match: gi|821325033|ref|NP_001295725.1| (ethylene-responsive transcription factor ERF113 [Jatropha curcas])

HSP 1 Score: 183.7 bits (465), Expect = 3.1e-43
Identity = 104/169 (61.54%), Postives = 124/169 (73.37%), Query Frame = 1


Query: 23  ETESGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 82
           + E+ R+RHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYD AAL+FKGTK
Sbjct: 47  DQENTRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAALAYDKAALKFKGTK 106

Query: 83  AKLNFPERVQANPADFGFLPSATAAASSAAPPPPATVASFSLPSVSL--PPPLSEEEAFP 142
           AKLNFPERVQ  P    F+ S+  ++S+ AP      A+ S PS     PPP   +EA+P
Sbjct: 107 AKLNFPERVQGKPEFSYFMTSSGDSSSALAPEQNPMAAAASAPSRHYLPPPPSFPQEAYP 166

Query: 143 GLHQYAQLLSSTDADFPYYSSTLLLNQQQ---PHYPSSSHTQQHQQDQD 187
            L QYAQ+LSS DA+F YY+S  L NQQ    P+Y S+  +QQHQQ Q+
Sbjct: 167 DLLQYAQILSSNDANFQYYTSN-LFNQQSYAPPYYSSTFSSQQHQQQQE 214

The following BLAST results are available for this feature:

BLAST of Lsi09G017700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
EF113_ARATH	1.7e-33	53.66	Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF114_ARATH	9.6e-29	89.23	Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF115_ARATH	4.1e-27	57.63	Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF112_ARATH	3.4e-26	47.20	Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF11...	[more]
EF110_ARATH	7.6e-26	82.35	Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF11...	[more]

BLAST of Lsi09G017700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G5_CUCSA	1.6e-70	82.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G091830 PE=4 SV=1	[more]
E5GB56_CUCME	5.1e-69	80.79	AP2 domain transcription factor RAP2 OS=Cucumis melo subsp. melo PE=4 SV=1	[more]
R9QAL1_JATCU	2.2e-43	61.54	AP2/ERF transcription factor OS=Jatropha curcas GN=AP2 PE=2 SV=1	[more]
B9RG00_RICCO	7.7e-41	60.23	AP2 domain transcription factor RAP2.3, putative OS=Ricinus communis GN=RCOM_143...	[more]
M5XU38_PRUPE	1.3e-40	59.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011097mg PE=4 SV=1	[more]

BLAST of Lsi09G017700 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13330.1	9.6e-35	53.66	related to AP2 6l	[more]
AT5G61890.1	5.4e-30	89.23	Integrase-type DNA-binding superfamily protein	[more]
AT5G07310.1	2.3e-28	57.63	Integrase-type DNA-binding superfamily protein	[more]
AT2G33710.2	1.9e-27	47.20	Integrase-type DNA-binding superfamily protein	[more]
AT5G50080.1	4.3e-27	82.35	ethylene response factor 110	[more]

BLAST of Lsi09G017700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722055\|ref\|XP_011658395.1\|	2.3e-70	82.49	PREDICTED: ethylene-responsive transcription factor ERF113 [Cucumis sativus]	[more]
gi\|700191206\|gb\|KGN46410.1\|	2.3e-70	82.49	hypothetical protein Csa_6G091830 [Cucumis sativus]	[more]
gi\|659120432\|ref\|XP_008460191.1\|	7.3e-69	80.79	PREDICTED: ethylene-responsive transcription factor ERF113-like [Cucumis melo]	[more]
gi\|307135826\|gb\|ADN33698.1\|	7.3e-69	80.79	AP2 domain transcription factor RAP2 [Cucumis melo subsp. melo]	[more]
gi\|821325033\|ref\|NP_001295725.1\|	3.1e-43	61.54	ethylene-responsive transcription factor ERF113 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G017700.1	Lsi09G017700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 32..43 score: 1.1E-11coord: 54..70 score: 1.1
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 30..89 score: 1.1
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 31..80 score: 2.7
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 31..94 score: 3.5
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 31..88 score: 24
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 31..89 score: 2.68
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 25..91 score: 2.1
None	No IPR available	PANTHER	PTHR31190:SF13	SUBFAMILY NOT NAMED	coord: 25..91 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G017700	Csa6G091830	Cucumber (Chinese Long) v2	culsiB402
Lsi09G017700	CSPI01G00060	Wild cucumber (PI 183967)	cpilsiB001
Lsi09G017700	CSPI06G07340	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G017700	Cucsa.349200	Cucumber (Gy14) v1	cgylsiB562
Lsi09G017700	CmaCh17G013980	Cucurbita maxima (Rimu)	cmalsiB333
Lsi09G017700	CmoCh17G013460	Cucurbita moschata (Rifu)	cmolsiB322
Lsi09G017700	Cla019324	Watermelon (97103) v1	lsiwmB039
Lsi09G017700	Cla007092	Watermelon (97103) v1	lsiwmB041
Lsi09G017700	MELO3C022358	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G017700	ClCG06G018370	Watermelon (Charleston Gray)	lsiwcgB028
Lsi09G017700	ClCG06G001720	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G017700	MELO3C022358.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G017700	Cla97C06G111000	Watermelon (97103) v2	lsiwmbB026
Lsi09G017700	Bhi12G002123	Wax gourd	lsiwgoB021
Lsi09G017700	CsGy6G007350	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G017700	Carg11559	Silver-seed gourd	carlsiB011
Lsi09G017700	CsaV3_6G007740	Cucumber (Chinese Long) v3	cuclsiB424

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G017700	Cucurbita maxima (Rimu)	cmalsiB812
Lsi09G017700	Cucurbita moschata (Rifu)	cmolsiB798
Lsi09G017700	Cucurbita pepo (Zucchini)	cpelsiB103
Lsi09G017700	Cucurbita pepo (Zucchini)	cpelsiB249
Lsi09G017700	Silver-seed gourd	carlsiB890