Carg11559 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11559
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Ethylene-responsive transcription factor
Location	Cucurbita_argyrosperma_scaffold_083 : 650009 .. 650539 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAAACAGAGAGGAAGATACATTATAGAGGCGTGAGACAAAGACCATGGGGGAAATGGGCGGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACGGCCGAGGCTGCTGCCATTGCGTATGATAACGCCGCTTTGAGGTTTAAAGGCACCAAGGCCAAGCTTAATTTTCCCGAACGAGTTCAAGCCAACCCTGCTGAGTTTGGCTTCCTTCCCTCCACTGGCGGTGCCGCTGCAGCTCCGGCAACCGTAGCATCCTTGTCATCATCGTCGTCATCATCATCTTCTGTTGCTCTTGTCCCGCGGTTGCCGCAGGAAGAAGCCTTCCCCGGCCTTCACCAGTACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTATTCTTCCACTCTTCTCAACCAACAACCCCATTACCCTTTCTCTTCTTCACCCAGCCACCCACACCAACAAGACCACGATCACTACGGCAAAGATTTTGGCCCCGGTGGCTCAACCAATTAG

mRNA sequence

ATGGCAGAAACAGAGAGGAAGATACATTATAGAGGCGTGAGACAAAGACCATGGGGGAAATGGGCGGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACGGCCGAGGCTGCTGCCATTGCGTATGATAACGCCGCTTTGAGGTTTAAAGGCACCAAGGCCAAGCTTAATTTTCCCGAACGAGTTCAAGCCAACCCTGCTGAGTTTGGCTTCCTTCCCTCCACTGGCGGTGCCGCTGCAGCTCCGGCAACCGTAGCATCCTTGTCATCATCGTCGTCATCATCATCTTCTGTTGCTCTTGTCCCGCGGTTGCCGCAGGAAGAAGCCTTCCCCGGCCTTCACCAGTACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTATTCTTCCACTCTTCTCAACCAACAACCCCATTACCCTTTCTCTTCTTCACCCAGCCACCCACACCAACAAGACCACGATCACTACGGCAAAGATTTTGGCCCCGGTGGCTCAACCAATTAG

Coding sequence (CDS)

ATGGCAGAAACAGAGAGGAAGATACATTATAGAGGCGTGAGACAAAGACCATGGGGGAAATGGGCGGCGGAGATTCGTGACCCGAAGAAAGCGGCTAGAGTTTGGCTTGGCACTTTCGACACGGCCGAGGCTGCTGCCATTGCGTATGATAACGCCGCTTTGAGGTTTAAAGGCACCAAGGCCAAGCTTAATTTTCCCGAACGAGTTCAAGCCAACCCTGCTGAGTTTGGCTTCCTTCCCTCCACTGGCGGTGCCGCTGCAGCTCCGGCAACCGTAGCATCCTTGTCATCATCGTCGTCATCATCATCTTCTGTTGCTCTTGTCCCGCGGTTGCCGCAGGAAGAAGCCTTCCCCGGCCTTCACCAGTACGCCCAACTCCTCTCCAGCACCGACGCCGACTTCCCTTATTATTCTTCCACTCTTCTCAACCAACAACCCCATTACCCTTTCTCTTCTTCACCCAGCCACCCACACCAACAAGACCACGATCACTACGGCAAAGATTTTGGCCCCGGTGGCTCAACCAATTAG

Protein sequence

MAETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNFPERVQANPAEFGFLPSTGGAAAAPATVASLSSSSSSSSSVALVPRLPQEEAFPGLHQYAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPGGSTN

Homology

[Close]

BLAST of Carg11559 vs. NCBI nr
Match: XP_022991755.1 (ethylene-responsive transcription factor ERF113-like, partial [Cucurbita maxima])

HSP 1 Score: 286.2 bits (731), Expect = 7.6e-74
Identity = 166/174 (95.40%), Postives = 166/174 (95.40%), Query Frame = 0


Query: 3   ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 62
           ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK
Sbjct: 79  ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 138

Query: 63  LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQ 122
           LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXX     LPQEEAFPGL Q
Sbjct: 139 LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXP----LPQEEAFPGLQQ 198

Query: 123 YAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPGGSTN 177
           YAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHP QQDHDHYGKDFG GGSTN
Sbjct: 199 YAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPRQQDHDHYGKDFGAGGSTN 248

[Close]

BLAST of Carg11559 vs. NCBI nr
Match: XP_022953884.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita moschata])

HSP 1 Score: 282.3 bits (721), Expect = 1.1e-72
Identity = 167/173 (96.53%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 5   ERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLN 64
           ERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLN
Sbjct: 61  ERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLN 120

Query: 65  FPERVQANPAEFGFLPSTG-GXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQY 124
           FPERVQANPAEFGFLPSTG  XXXXXXXXXXXXXXXXXXXXXXXX  LPQ EAFPGLHQY
Sbjct: 121 FPERVQANPAEFGFLPSTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPQGEAFPGLHQY 180

Query: 125 AQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPGGSTN 177
           AQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFG GGSTN
Sbjct: 181 AQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGAGGSTN 233

[Close]

BLAST of Carg11559 vs. NCBI nr
Match: XP_023548873.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 1.4e-72
Identity = 168/176 (95.45%), Postives = 168/176 (95.45%), Query Frame = 0


Query: 1   MAETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 60
           MAETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK
Sbjct: 8   MAETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTK 67

Query: 61  AKLNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGL 120
           AKLNFPERVQANPAEFGFLPST GXXXXXXXXXXXXXXXXXXXXXXXX    QEEAFPGL
Sbjct: 68  AKLNFPERVQANPAEFGFLPST-GXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEEAFPGL 127

Query: 121 HQYAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPGGSTN 177
           HQYAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHP  QDHDHYGKDFG GGSTN
Sbjct: 128 HQYAQLLSSTDADFPYYSSTLLNQQPHYPFSSSPSHPLPQDHDHYGKDFGAGGSTN 182

[Close]

BLAST of Carg11559 vs. NCBI nr
Match: XP_023004892.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 2.6e-50
Identity = 137/183 (74.86%), Postives = 141/183 (77.05%), Query Frame = 0


Query: 3   ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 62
           E+  K HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKG KAK
Sbjct: 50  ESGSKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGNKAK 109

Query: 63  LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQ 122
           LNFPER+Q NP  F FLP+  G  XXXXXXXXXXXXXXXXXXXXXX     +EAFPGLHQ
Sbjct: 110 LNFPERLQPNPPHFAFLPA--GGAXXXXXXXXXXXXXXXXXXXXXXXXXXHQEAFPGLHQ 169

Query: 123 YAQLLSSTDADFPYYSSTLLNQQPHYPFSS---------SPSHPHQQDHDHYGKDFGPGG 177
           YAQLLSSTDADFPYYSSTLLNQ  HYPF S                      GKDFGPGG
Sbjct: 170 YAQLLSSTDADFPYYSSTLLNQPNHYPFYSXXXXXXXXXXXXXXXXXXXXXXGKDFGPGG 229

[Close]

BLAST of Carg11559 vs. NCBI nr
Match: XP_022960396.1 (ethylene-responsive transcription factor ERF113-like [Cucurbita moschata])

HSP 1 Score: 198.7 bits (504), Expect = 1.6e-47
Identity = 120/148 (81.08%), Postives = 123/148 (83.11%), Query Frame = 0


Query: 3   ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 62
           E+ RK HYRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAEAAAIAYDNAALRFKG KAK
Sbjct: 50  ESGRKRHYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEAAAIAYDNAALRFKGNKAK 109

Query: 63  LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQ 122
           LNFPER+Q NP  F FLP+ G XXXXXXXXXXXXXXXXX            EEAFPGLHQ
Sbjct: 110 LNFPERLQPNPPHFAFLPAGGXXXXXXXXXXXXXXXXXXP---------SHEEAFPGLHQ 169

Query: 123 YAQLLSSTDADFPYYSSTLLNQQPHYPF 151
           YAQLLSSTDADFPYYSSTLLNQ   YPF
Sbjct: 170 YAQLLSSTDADFPYYSSTLLNQPHQYPF 188

[Close]

BLAST of Carg11559 vs. TAIR10
Match: AT5G13330.1 (related to AP2 6l)

HSP 1 Score: 130.6 bits (327), Expect = 9.7e-31
Identity = 92/148 (62.16%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           R+ HYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AA+AYD AAL+FKGTKAKLNF
Sbjct: 35  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Query: 66  PERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQYAQ 125
           PERVQ          +  G       XXXXXXXXXXXXXXX  P    ++    + QYAQ
Sbjct: 95  PERVQGPTTTTTISHAPRG--VSESMXXXXXXXXXXXXXXXSWPMTYNQD----ILQYAQ 154

Query: 126 LL-SSTDADFPYYSSTLLNQQPHYPFSS 153
           LL S+ + D  YY+STL +Q    PFS+
Sbjct: 155 LLTSNNEVDLSYYTSTLFSQ----PFST 172

[Close]

BLAST of Carg11559 vs. TAIR10
Match: AT5G07310.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-29
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           RK HYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEAAA+AYDNAAL+FKG+KAKLNF
Sbjct: 88  RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147

Query: 66  PERVQ 71
           PER Q
Sbjct: 148 PERAQ 152

[Close]

BLAST of Carg11559 vs. TAIR10
Match: AT5G61890.1 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 125.6 bits (314), Expect = 3.1e-29
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           R+ HYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE+AA+AYD AAL+FKG+KAKLNF
Sbjct: 86  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Query: 66  PERVQ 71
           PERVQ
Sbjct: 146 PERVQ 150

[Close]

BLAST of Carg11559 vs. TAIR10
Match: AT2G33710.2 (Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-27
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           R+ +YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AA+AYD AA  F+G KAKLNF
Sbjct: 66  RQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF 125

Query: 66  PERVQANPAEFGFLPST 83
           PE ++ NP +    P+T
Sbjct: 126 PEHIRVNPTQLYPSPAT 142

[Close]

BLAST of Carg11559 vs. TAIR10
Match: AT5G50080.1 (ethylene response factor 110)

HSP 1 Score: 118.2 bits (295), Expect = 5.0e-27
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 5   ERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLN 64
           E+K  YRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAEAAA AYD AALRF+G KAKLN
Sbjct: 72  EKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLN 131

Query: 65  FPERVQANP 74
           FPE V+  P
Sbjct: 132 FPEDVRILP 140

[Close]

BLAST of Carg11559 vs. Swiss-Prot
Match: sp|Q9LYU3|EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana OX=3702 GN=ERF113 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 92/148 (62.16%), Postives = 105/148 (70.95%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           R+ HYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AA+AYD AAL+FKGTKAKLNF
Sbjct: 35  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Query: 66  PERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQYAQ 125
           PERVQ          +  G       XXXXXXXXXXXXXXX  P    ++    + QYAQ
Sbjct: 95  PERVQGPTTTTTISHAPRG--VSESMXXXXXXXXXXXXXXXSWPMTYNQD----ILQYAQ 154

Query: 126 LL-SSTDADFPYYSSTLLNQQPHYPFSS 153
           LL S+ + D  YY+STL +Q    PFS+
Sbjct: 155 LLTSNNEVDLSYYTSTLFSQ----PFST 172

[Close]

BLAST of Carg11559 vs. Swiss-Prot
Match: sp|Q9LY29|EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana OX=3702 GN=ERF115 PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 1.9e-28
Identity = 58/65 (89.23%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           RK HYRGVRQRPWGKWAAEIRDP+KAARVWLGTF+TAEAAA+AYDNAAL+FKG+KAKLNF
Sbjct: 88  RKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147

Query: 66  PERVQ 71
           PER Q
Sbjct: 148 PERAQ 152

[Close]

BLAST of Carg11559 vs. Swiss-Prot
Match: sp|Q9FH54|EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 GN=ERF114 PE=1 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.6e-28
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           R+ HYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE+AA+AYD AAL+FKG+KAKLNF
Sbjct: 86  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145

Query: 66  PERVQ 71
           PERVQ
Sbjct: 146 PERVQ 150

[Close]

BLAST of Carg11559 vs. Swiss-Prot
Match: sp|P93007|EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana OX=3702 GN=ERF112 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.8e-26
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           R+ +YRGVRQRPWGKWAAEIRDP KAARVWLGTFDTAE AA+AYD AA  F+G KAKLNF
Sbjct: 66  RQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNF 125

Query: 66  PERVQANPAEFGFLPST 83
           PE ++ NP +    P+T
Sbjct: 126 PEHIRVNPTQLYPSPAT 142

[Close]

BLAST of Carg11559 vs. Swiss-Prot
Match: sp|Q70II3|EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 GN=ERF110 PE=2 SV=2)

HSP 1 Score: 118.2 bits (295), Expect = 9.0e-26
Identity = 56/69 (81.16%), Postives = 60/69 (86.96%), Query Frame = 0


Query: 5   ERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLN 64
           E+K  YRGVRQRPWGKWAAEIRDP +AARVWLGTFDTAEAAA AYD AALRF+G KAKLN
Sbjct: 72  EKKRRYRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLN 131

Query: 65  FPERVQANP 74
           FPE V+  P
Sbjct: 132 FPEDVRILP 140

[Close]

BLAST of Carg11559 vs. TrEMBL
Match: tr|A0A0A0K9G5|A0A0A0K9G5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091830 PE=4 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 3.2e-44
Identity = 109/182 (59.89%), Postives = 113/182 (62.09%), Query Frame = 0


Query: 1   MAETE---RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFK 60
           MAE++   RK HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFK
Sbjct: 15  MAESDQSGRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFK 74

Query: 61  GTKAKLNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAF 120
           GTKAKLNFPERVQANPAEFGFL                             P L  EEAF
Sbjct: 75  GTKAKLNFPERVQANPAEFGFLSPAS-------IAAPPPPTAVSSPSVSLPPPLSHEEAF 134

Query: 121 PGLHQYAQLLSSTDADFPY-----YSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPG 175
           PGLHQYAQLLSS+DADFPY                               D YG+DFG G
Sbjct: 135 PGLHQYAQLLSSSDADFPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRYGEDFGTG 189

[Close]

BLAST of Carg11559 vs. TrEMBL
Match: tr|A0A1S3CCF2|A0A1S3CCF2_CUCME (ethylene-responsive transcription factor ERF113-like OS=Cucumis melo OX=3656 GN=LOC103499076 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 121/176 (68.75%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           RK HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF
Sbjct: 79  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 138

Query: 66  PERVQANPAEFGFL--PSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQY 125
           PERVQANPAEFGFL  PS            XXXXXXXXXXXXXXX  L  EE FPGLHQY
Sbjct: 139 PERVQANPAEFGFLSPPSIAA---------XXXXXXXXXXXXXXXXXLSHEEVFPGLHQY 198

Query: 126 AQLLSSTDADFPY-----YSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPGGS 175
           AQLLSS+DADFPY                               D YG+DFG GGS
Sbjct: 199 AQLLSSSDADFPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRYGEDFGTGGS 245

[Close]

BLAST of Carg11559 vs. TrEMBL
Match: tr|E5GB56|E5GB56_CUCME (AP2 domain transcription factor RAP2 OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.3e-42
Identity = 121/176 (68.75%), Postives = 123/176 (69.89%), Query Frame = 0


Query: 6   RKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 65
           RK HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF
Sbjct: 84  RKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAKLNF 143

Query: 66  PERVQANPAEFGFL--PSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQY 125
           PERVQANPAEFGFL  PS            XXXXXXXXXXXXXXX  L  EE FPGLHQY
Sbjct: 144 PERVQANPAEFGFLSPPSIAA---------XXXXXXXXXXXXXXXXXLSHEEVFPGLHQY 203

Query: 126 AQLLSSTDADFPY-----YSSTLLNQQPHYPFSSSPSHPHQQDHDHYGKDFGPGGS 175
           AQLLSS+DADFPY                               D YG+DFG GGS
Sbjct: 204 AQLLSSSDADFPYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRYGEDFGTGGS 250

[Close]

BLAST of Carg11559 vs. TrEMBL
Match: tr|A0A2P4JYR7|A0A2P4JYR7_QUESU (Ethylene-responsive transcription factor OS=Quercus suber OX=58331 GN=CFP56_18246 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 7.3e-41
Identity = 93/143 (65.03%), Postives = 101/143 (70.63%), Query Frame = 0


Query: 3   ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 62
           E  R+ HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAE AA+AYD AALRFKGTKAK
Sbjct: 105 EIARRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEDAAMAYDKAALRFKGTKAK 164

Query: 63  LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQ 122
           LNFPERVQ    EFG+L  T G                        P + Q+EAFPGL+Q
Sbjct: 165 LNFPERVQGK-TEFGYLTGTHG---NTSGVSHEQNPSPVIPPPPPLPFMSQQEAFPGLYQ 224

Query: 123 YAQLLSSTDADFPYYSSTLLNQQ 146
           YAQLLSSTD +FP Y+S L NQQ
Sbjct: 225 YAQLLSSTDIEFPGYTSNLFNQQ 243

[Close]

BLAST of Carg11559 vs. TrEMBL
Match: tr|A0A2I4GCL9|A0A2I4GCL9_9ROSI (ethylene-responsive transcription factor ERF113-like OS=Juglans regia OX=51240 GN=LOC109006724 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.8e-40
Identity = 102/143 (71.33%), Postives = 113/143 (79.02%), Query Frame = 0


Query: 3   ETERKIHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAIAYDNAALRFKGTKAK 62
           E  R+ HYRGVRQRPWGKWAAEIRDPKKAARVWLGTF+TAE AA+AYD AALRFKGTKAK
Sbjct: 51  ENARRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAALAYDRAALRFKGTKAK 110

Query: 63  LNFPERVQANPAEFGFLPSTGGXXXXXXXXXXXXXXXXXXXXXXXXPRLPQEEAFPGLHQ 122
           LNFPERVQ   +EFG+ PS  G            XXXXXXXXXXXX  L QE  FPGL+Q
Sbjct: 111 LNFPERVQGTTSEFGY-PS--GFGNTSVSQSAVPXXXXXXXXXXXXXTLSQESTFPGLYQ 170

Query: 123 YAQLLSSTDADFPYYSSTLLNQQ 146
           YAQLLSS+D +FPYY+S+L NQ+
Sbjct: 171 YAQLLSSSDVEFPYYTSSLFNQE 190

The following BLAST results are available for this feature:

BLAST of Carg11559 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022991755.1	7.6e-74	95.40	ethylene-responsive transcription factor ERF113-like, partial [Cucurbita maxima]	[more]
XP_022953884.1	1.1e-72	96.53	ethylene-responsive transcription factor ERF113-like [Cucurbita moschata]	[more]
XP_023548873.1	1.4e-72	95.45	ethylene-responsive transcription factor ERF113-like [Cucurbita pepo subsp. pepo...	[more]
XP_023004892.1	2.6e-50	74.86	ethylene-responsive transcription factor ERF113-like [Cucurbita maxima]	[more]
XP_022960396.1	1.6e-47	81.08	ethylene-responsive transcription factor ERF113-like [Cucurbita moschata]	[more]

BLAST of Carg11559 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G13330.1	9.7e-31	62.16	related to AP2 6l	[more]
AT5G07310.1	1.1e-29	89.23	Integrase-type DNA-binding superfamily protein	[more]
AT5G61890.1	3.1e-29	87.69	Integrase-type DNA-binding superfamily protein	[more]
AT2G33710.2	1.0e-27	71.43	Integrase-type DNA-binding superfamily protein	[more]
AT5G50080.1	5.0e-27	81.16	ethylene response factor 110	[more]

BLAST of Carg11559 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LYU3\|EF113_ARATH	1.7e-29	62.16	Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9LY29\|EF115_ARATH	1.9e-28	89.23	Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q9FH54\|EF114_ARATH	5.6e-28	87.69	Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|P93007\|EF112_ARATH	1.8e-26	71.43	Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana OX=3702 ...	[more]
sp\|Q70II3\|EF110_ARATH	9.0e-26	81.16	Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Carg11559 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K9G5\|A0A0A0K9G5_CUCSA	3.2e-44	59.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G091830 PE=4 SV=1	[more]
tr\|A0A1S3CCF2\|A0A1S3CCF2_CUCME	2.3e-42	68.75	ethylene-responsive transcription factor ERF113-like OS=Cucumis melo OX=3656 GN=...	[more]
tr\|E5GB56\|E5GB56_CUCME	2.3e-42	68.75	AP2 domain transcription factor RAP2 OS=Cucumis melo subsp. melo OX=412675 PE=4 ...	[more]
tr\|A0A2P4JYR7\|A0A2P4JYR7_QUESU	7.3e-41	65.03	Ethylene-responsive transcription factor OS=Quercus suber OX=58331 GN=CFP56_1824...	[more]
tr\|A0A2I4GCL9\|A0A2I4GCL9_9ROSI	2.8e-40	71.33	ethylene-responsive transcription factor ERF113-like OS=Juglans regia OX=51240 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR017392	AP2/ERF-transcript_factor
IPR036955	AP2/ERF_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11559-RA	Carg11559-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 32..48 score: 70.37 coord: 10..21 score: 76.67
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 9..72 e-value: 3.5E-38 score: 142.8
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 9..58 e-value: 2.2E-13 score: 50.1
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 9..66 score: 24.882
IPR001471	AP2/ERF domain	CDD	cd00018	AP2	coord: 9..67 e-value: 1.63274E-23 score: 88.0975
IPR036955	AP2/ERF domain superfamily	GENE3D	G3DSA:3.30.730.10		coord: 8..69 e-value: 8.3E-32 score: 110.8
IPR017392	AP2/ERF transcription factor ERF/PTI6	PIRSF	PIRSF038123	PTI6	coord: 1..110 e-value: 4.7E-25 score: 86.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 145..176
None	No IPR available	PANTHER	PTHR31190	FAMILY NOT NAMED	coord: 3..157
None	No IPR available	PANTHER	PTHR31190:SF58	SUBFAMILY NOT NAMED	coord: 3..157
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	SSF54171	DNA-binding domain	coord: 9..67

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11559	Cla007092	Watermelon (97103) v1	carwmB0015
Carg11559	Csa6G091830	Cucumber (Chinese Long) v2	carcuB0012
Carg11559	MELO3C022358	Melon (DHL92) v3.5.1	carmeB0010
Carg11559	ClCG06G001720	Watermelon (Charleston Gray)	carwcgB0013
Carg11559	CSPI06G07340	Wild cucumber (PI 183967)	carcpiB0012
Carg11559	Cucsa.349200	Cucumber (Gy14) v1	carcgyB0012
Carg11559	CmaCh17G013980	Cucurbita maxima (Rimu)	carcmaB0020
Carg11559	CmoCh17G013460	Cucurbita moschata (Rifu)	carcmoB0021
Carg11559	Lsi09G017700	Bottle gourd (USVL1VR-Ls)	carlsiB011
Carg11559	Cp4.1LG12g10150	Cucurbita pepo (Zucchini)	carcpeB0018
Carg11559	CsGy6G007350	Cucumber (Gy14) v2	carcgybB0011
Carg11559	MELO3C022358.2	Melon (DHL92) v3.6.1	carmedB0011
Carg11559	CsaV3_6G007740	Cucumber (Chinese Long) v3	carcucB0012
Carg11559	Cla97C06G111000	Watermelon (97103) v2	carwmbB0011
Carg11559	Bhi12G002123	Wax gourd	carwgoB0013

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11559	Carg10239	Silver-seed gourd	carcarB012

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11559	Silver-seed gourd	carcarB014
Carg11559	Cucurbita maxima (Rimu)	carcmaB0023
Carg11559	Cucurbita moschata (Rifu)	carcmoB0024
Carg11559	Cucurbita pepo (Zucchini)	carcpeB0022