Lsi09G016880 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G016880
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ethylene-responsive transcription factor 1
Location	chr09 : 25348235 .. 25348837 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACAAACTCCCACCATTCCACCACCAGTTCCTCCGCCGTGTCCTCCGCCGTAAGCAGCCGGAAAAGGCAGAGGAGCACAAGCGCCGCCACAGAAAGCGAATCAGAAGAATCAACCCCAAAATTCAGAGGAGTAAGGCTAAGAACATGGGGAAAATGGGTATCTGAAATACGAGAGCCAAGGAAGAAATCAAGAATATGGCTCGGCACATATCCAACGGCGGAGATGGCGGCGCGTGCACATGACGTGGCTGCACTCGCCATCAAAGGCCACCGTGCTTTCCTCAATTTCCCTCAACTCAAACACCATCTCCCTCGCCCTGCCTCCCTCTCCGCCAAAGACATTCAAGCCGCCGCCGCACAAGCCGCCGCCATCAAACAAGAACCGGAAACGACGTCGTGTGAAGACGAAGACACGTGGTTTGATTTGCCGGATCTAATTACCAATGAATTCTTAATGGGTTTTGATCATCATTATTATTCATCAGCTTCTTCTTCTTCTTCATCATCATCATCGCAATGGCAATTTCTTGCAGATGATCATGATGATCACCACCTTCAATGGCACTCTGATTTTTCTCATACTATTTTTCCAATTTGA

mRNA sequence

ATGACCACAAACTCCCACCATTCCACCACCAGTTCCTCCGCCGTGTCCTCCGCCGTAAGCAGCCGGAAAAGGCAGAGGAGCACAAGCGCCGCCACAGAAAGCGAATCAGAAGAATCAACCCCAAAATTCAGAGGAGTAAGGCTAAGAACATGGGGAAAATGGGTATCTGAAATACGAGAGCCAAGGAAGAAATCAAGAATATGGCTCGGCACATATCCAACGGCGGAGATGGCGGCGCGTGCACATGACGTGGCTGCACTCGCCATCAAAGGCCACCGTGCTTTCCTCAATTTCCCTCAACTCAAACACCATCTCCCTCGCCCTGCCTCCCTCTCCGCCAAAGACATTCAAGCCGCCGCCGCACAAGCCGCCGCCATCAAACAAGAACCGGAAACGACGTCGTGTGAAGACGAAGACACGTGGTTTGATTTGCCGGATCTAATTACCAATGAATTCTTAATGGGTTTTGATCATCATTATTATTCATCAGCTTCTTCTTCTTCTTCATCATCATCATCGCAATGGCAATTTCTTGCAGATGATCATGATGATCACCACCTTCAATGGCACTCTGATTTTTCTCATACTATTTTTCCAATTTGA

Coding sequence (CDS)

ATGACCACAAACTCCCACCATTCCACCACCAGTTCCTCCGCCGTGTCCTCCGCCGTAAGCAGCCGGAAAAGGCAGAGGAGCACAAGCGCCGCCACAGAAAGCGAATCAGAAGAATCAACCCCAAAATTCAGAGGAGTAAGGCTAAGAACATGGGGAAAATGGGTATCTGAAATACGAGAGCCAAGGAAGAAATCAAGAATATGGCTCGGCACATATCCAACGGCGGAGATGGCGGCGCGTGCACATGACGTGGCTGCACTCGCCATCAAAGGCCACCGTGCTTTCCTCAATTTCCCTCAACTCAAACACCATCTCCCTCGCCCTGCCTCCCTCTCCGCCAAAGACATTCAAGCCGCCGCCGCACAAGCCGCCGCCATCAAACAAGAACCGGAAACGACGTCGTGTGAAGACGAAGACACGTGGTTTGATTTGCCGGATCTAATTACCAATGAATTCTTAATGGGTTTTGATCATCATTATTATTCATCAGCTTCTTCTTCTTCTTCATCATCATCATCGCAATGGCAATTTCTTGCAGATGATCATGATGATCACCACCTTCAATGGCACTCTGATTTTTCTCATACTATTTTTCCAATTTGA

Protein sequence

MTTNSHHSTTSSSAVSSAVSSRKRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCEDEDTWFDLPDLITNEFLMGFDHHYYSSASSSSSSSSSQWQFLADDHDDHHLQWHSDFSHTIFPI

Homology

[Close]

BLAST of Lsi09G016880 vs. Swiss-Prot
Match: ERF39_ARATH (Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF039 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.5e-34
Identity = 81/133 (60.90%), Postives = 94/133 (70.68%), Query Frame = 1


Query: 23  KRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 82
           K  +S+    E +     P FRGVR+R WGKWVSEIREPRKKSRIWLGT+ T EMAARAH
Sbjct: 20  KTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAH 79

Query: 83  DVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIK-QEPE------TTSC 142
           DVAALAIKG  A LNFP+L +HLPRPAS   KDIQ AAA AAA+  + PE      T+S 
Sbjct: 80  DVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVDWKAPESPSSTVTSSP 139

Query: 143 EDEDTWFDLPDLI 149
             +D + DLPDL+
Sbjct: 140 VADDAFSDLPDLL 152

[Close]

BLAST of Lsi09G016880 vs. Swiss-Prot
Match: ERF38_ARATH (Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF038 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.7e-34
Identity = 80/129 (62.02%), Postives = 90/129 (69.77%), Query Frame = 1


Query: 41  PKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQ 100
           P FRGVR+R WGKWVSEIREP+KKSRIWLGT+ TAEMAARAHDVAALAIKG  A LNFP+
Sbjct: 43  PNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPE 102

Query: 101 LKHHLPRPASLSAKDIQAAAAQAA---AIKQEPETTS----------------CEDEDTW 151
           L +HLPRPAS   KDIQAAAA AA   AI  + ET+S                   +D +
Sbjct: 103 LAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTETSSPAMIALSDDAF 162

[Close]

BLAST of Lsi09G016880 vs. Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.2e-31
Identity = 85/166 (51.20%), Postives = 106/166 (63.86%), Query Frame = 1


Query: 19  VSSRKRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMA 78
           V S       S+  + E  +    +RG R+R+WGKWVSEIREPRKKSRIWLGT+PTAEMA
Sbjct: 2   VDSHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMA 61

Query: 79  ARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCEDE 138
           ARAHDVAAL+IKG  A LNFP+L   LPRP SLS +DIQAAAA+AA +  +      +D+
Sbjct: 62  ARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDD 121

Query: 139 DTWFDLPDLITNEFLMGFDHHYYSSASSSSSSSSSQWQFLADDHDD 185
            T   L      E +  +     S++SSSSSSSSS    L+ +  D
Sbjct: 122 ST--PLQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGD 165

[Close]

BLAST of Lsi09G016880 vs. Swiss-Prot
Match: ERF35_ARATH (Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF035 PE=2 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 3.0e-30
Identity = 86/165 (52.12%), Postives = 103/165 (62.42%), Query Frame = 1


Query: 8   STTSSSAVSSAVSSRKRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRI 67
           ST+  S V    S  KR++S      S+  ++   +RGVR+R+WGKWVSEIREPRKKSRI
Sbjct: 40  STSKRSLVQDNDSGGKRRKSNV----SDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRI 99

Query: 68  WLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIK 127
           WLGTYPTAEMAARAHDVAALAIKG+  FLNFP+L   LPRP S S KDIQAAA +AA   
Sbjct: 100 WLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAA--- 159

Query: 128 QEPETTSCEDEDTWFDLPDLITNEFLMGFDHHYYSSASSSSSSSS 173
                    +  TW     +I  +      H    S + SS+SSS
Sbjct: 160 ---------EATTWH--KPVIDKKLADELSHSELLSTAQSSTSSS 186

[Close]

BLAST of Lsi09G016880 vs. Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 8.8e-30
Identity = 86/174 (49.43%), Postives = 104/174 (59.77%), Query Frame = 1


Query: 1   MTTNSHHSTTSSSAVSSAVSSRKRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIRE 60
           MT +S  S   SS V         Q+ +      +   S P +RGVR+RTWGKWVSEIRE
Sbjct: 1   MTESSIISVKQSSPVPEEEDHHHHQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIRE 60

Query: 61  PRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAA 120
           PRKKSRIWLGT+ T EMAARAHD AAL IKG  A LNFP+L  +LPRPAS S +D+QAAA
Sbjct: 61  PRKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAA 120

Query: 121 AQAAAIKQEPETTSCEDEDTWFDLPDLITNEFLMGFDHHYYSSASSSSSSSSSQ 175
           A AAA+   P ++S    D     P  +            YS+ +SSS S SS+
Sbjct: 121 AVAAAMDFSPSSSSLVVSD-----PTTVIAPAETQLSSSSYSTCTSSSLSPSSE 169

[Close]

BLAST of Lsi09G016880 vs. TrEMBL
Match: A0A0A0KAN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104640 PE=4 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.4e-79
Identity = 174/214 (81.31%), Postives = 184/214 (85.98%), Query Frame = 1


Query: 1   MTTNSHHSTTSSSAVSS-AVSSRKRQRS-TSAATESES--EESTPKFRGVRLRTWGKWVS 60
           MTTNSHHSTTSSSAVS    +SRKRQRS TS+ATESES  E STPKFRGVRLR WGKWVS
Sbjct: 1   MTTNSHHSTTSSSAVSCLTATSRKRQRSSTSSATESESDQESSTPKFRGVRLRAWGKWVS 60

Query: 61  EIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDI 120
           EIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKH LPRPASLSAKDI
Sbjct: 61  EIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHQLPRPASLSAKDI 120

Query: 121 QAAAAQAAAIKQEPET-TSC--------EDEDTWFDLPDLI-TNEFLMGFDHHYYSSASS 180
           QAAAAQAAA+K EPET TSC        E+E TWFDLPDLI +N FL+G D +Y SS SS
Sbjct: 121 QAAAAQAAALKHEPETPTSCLEEGLEEEEEESTWFDLPDLIVSNGFLLGLDENYSSSCSS 180

Query: 181 SSSSSSSQWQFLADDHDDHHLQWHSDFSHTIFPI 201
           SSSSSSS WQFL DDH+D+H QWHSDFSHTIFP+
Sbjct: 181 SSSSSSS-WQFLVDDHEDNHFQWHSDFSHTIFPV 213

[Close]

BLAST of Lsi09G016880 vs. TrEMBL
Match: S8E1X8_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05091 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.0e-33
Identity = 76/105 (72.38%), Postives = 84/105 (80.00%), Query Frame = 1


Query: 43  FRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLK 102
           +RGVR R+WGKWV EIREP+KKSRIWLGTY TAEMAARAHDVAALAIKG  A LNFP L 
Sbjct: 2   YRGVRKRSWGKWVCEIREPKKKSRIWLGTYETAEMAARAHDVAALAIKGRSAHLNFPALA 61

Query: 103 HHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCEDEDTWFDLPDL 148
             LPRPAS S +DIQAAAA+AA I  E   +  ED+D +FDLPDL
Sbjct: 62  EELPRPASTSRRDIQAAAAKAAFIGSESSGSGREDDDAFFDLPDL 106

[Close]

BLAST of Lsi09G016880 vs. TrEMBL
Match: G7JXD9_MEDTR (Ethylene response factor OS=Medicago truncatula GN=MTR_5g012910 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.7e-33
Identity = 76/131 (58.02%), Postives = 95/131 (72.52%), Query Frame = 1


Query: 41  PKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQ 100
           P +RGVR+R+WGKWVSEIREP+KKSRIWLGTYPT EMAARAHDVAA AIKG  A+LNFP+
Sbjct: 26  PLYRGVRMRSWGKWVSEIREPKKKSRIWLGTYPTPEMAARAHDVAAQAIKGSSAYLNFPE 85

Query: 101 LKHHLPRPASLSAKDIQAAAAQAAAI---------KQEPETTSCEDEDTWFDLPDLITNE 160
           L   LPRP + S KDIQAAAA+AA +           + + T  +++DT++DLPDL+ + 
Sbjct: 86  LAQQLPRPTTNSPKDIQAAAAKAATMGSLHEAQDQDHDIQETLNDEDDTFYDLPDLLLDS 145

Query: 161 FLMGFDHHYYS 163
                + HY S
Sbjct: 146 NKSSSEFHYSS 156

[Close]

BLAST of Lsi09G016880 vs. TrEMBL
Match: S8EAS7_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05115 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-32
Identity = 77/119 (64.71%), Postives = 92/119 (77.31%), Query Frame = 1


Query: 41  PKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQ 100
           P +RGVR+R+WGKWVSEIR+PRKKSRIWLGTYPTAEMAARAHDVAAL+IKG+ A LNFPQ
Sbjct: 15  PIYRGVRMRSWGKWVSEIRQPRKKSRIWLGTYPTAEMAARAHDVAALSIKGNSAVLNFPQ 74

Query: 101 LKHHLPRPASLSAKDIQAAAAQAAAIKQE------------PETTSCEDEDTWFDLPDL 148
           L H LPRPASLS +D+QAAAA+AAA+ ++              T+S  D    F+LP+L
Sbjct: 75  LTHSLPRPASLSPRDVQAAAAKAAAMAEKQVVPLSGATIAAAATSSDHDLSEIFELPNL 133

[Close]

BLAST of Lsi09G016880 vs. TrEMBL
Match: A0A151TJA8_CAJCA (Ethylene-responsive transcription factor ERF034 family OS=Cajanus cajan GN=KK1_013468 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.7e-32
Identity = 74/116 (63.79%), Postives = 89/116 (76.72%), Query Frame = 1


Query: 41  PKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQ 100
           P +RGVR+R WGKWVSEIREP+KKSRIWLGT+PT EMAARAHDVAA AIKG  AFLNFP+
Sbjct: 20  PTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFPTPEMAARAHDVAAQAIKGSSAFLNFPE 79

Query: 101 LKHHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCE--------DEDTWFDLPDLI 149
           L  HLPRP + S KDIQAAAA+AAA+  E +  + +        ++D + DLPDL+
Sbjct: 80  LASHLPRPPTTSPKDIQAAAAKAAALNCEAQAQAQQSSNASLSGEDDAFLDLPDLL 135

[Close]

BLAST of Lsi09G016880 vs. TAIR10
Match: AT4G16750.1 (AT4G16750.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 146.0 bits (367), Expect = 2.5e-35
Identity = 81/133 (60.90%), Postives = 94/133 (70.68%), Query Frame = 1


Query: 23  KRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAH 82
           K  +S+    E +     P FRGVR+R WGKWVSEIREPRKKSRIWLGT+ T EMAARAH
Sbjct: 20  KTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRKKSRIWLGTFSTPEMAARAH 79

Query: 83  DVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIK-QEPE------TTSC 142
           DVAALAIKG  A LNFP+L +HLPRPAS   KDIQ AAA AAA+  + PE      T+S 
Sbjct: 80  DVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAAAAVDWKAPESPSSTVTSSP 139

Query: 143 EDEDTWFDLPDLI 149
             +D + DLPDL+
Sbjct: 140 VADDAFSDLPDLL 152

[Close]

BLAST of Lsi09G016880 vs. TAIR10
Match: AT2G35700.1 (AT2G35700.1 ERF family protein 38)

HSP 1 Score: 145.2 bits (365), Expect = 4.3e-35
Identity = 80/129 (62.02%), Postives = 90/129 (69.77%), Query Frame = 1


Query: 41  PKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQ 100
           P FRGVR+R WGKWVSEIREP+KKSRIWLGT+ TAEMAARAHDVAALAIKG  A LNFP+
Sbjct: 43  PNFRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTAEMAARAHDVAALAIKGGSAHLNFPE 102

Query: 101 LKHHLPRPASLSAKDIQAAAAQAA---AIKQEPETTS----------------CEDEDTW 151
           L +HLPRPAS   KDIQAAAA AA   AI  + ET+S                   +D +
Sbjct: 103 LAYHLPRPASADPKDIQAAAAAAAAAVAIDMDVETSSPSPSPTVTETSSPAMIALSDDAF 162

[Close]

BLAST of Lsi09G016880 vs. TAIR10
Match: AT2G25820.1 (AT2G25820.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 137.9 bits (346), Expect = 6.9e-33
Identity = 85/166 (51.20%), Postives = 106/166 (63.86%), Query Frame = 1


Query: 19  VSSRKRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMA 78
           V S       S+  + E  +    +RG R+R+WGKWVSEIREPRKKSRIWLGT+PTAEMA
Sbjct: 2   VDSHGSDTECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMA 61

Query: 79  ARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCEDE 138
           ARAHDVAAL+IKG  A LNFP+L   LPRP SLS +DIQAAAA+AA +  +      +D+
Sbjct: 62  ARAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDD 121

Query: 139 DTWFDLPDLITNEFLMGFDHHYYSSASSSSSSSSSQWQFLADDHDD 185
            T   L      E +  +     S++SSSSSSSSS    L+ +  D
Sbjct: 122 ST--PLQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGD 165

[Close]

BLAST of Lsi09G016880 vs. TAIR10
Match: AT3G60490.1 (AT3G60490.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 133.3 bits (334), Expect = 1.7e-31
Identity = 86/165 (52.12%), Postives = 103/165 (62.42%), Query Frame = 1


Query: 8   STTSSSAVSSAVSSRKRQRSTSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRI 67
           ST+  S V    S  KR++S      S+  ++   +RGVR+R+WGKWVSEIREPRKKSRI
Sbjct: 40  STSKRSLVQDNDSGGKRRKSNV----SDDNKNPTSYRGVRMRSWGKWVSEIREPRKKSRI 99

Query: 68  WLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIK 127
           WLGTYPTAEMAARAHDVAALAIKG+  FLNFP+L   LPRP S S KDIQAAA +AA   
Sbjct: 100 WLGTYPTAEMAARAHDVAALAIKGNSGFLNFPELSGLLPRPVSCSPKDIQAAATKAA--- 159

Query: 128 QEPETTSCEDEDTWFDLPDLITNEFLMGFDHHYYSSASSSSSSSS 173
                    +  TW     +I  +      H    S + SS+SSS
Sbjct: 160 ---------EATTWH--KPVIDKKLADELSHSELLSTAQSSTSSS 186

[Close]

BLAST of Lsi09G016880 vs. TAIR10
Match: AT4G32800.1 (AT4G32800.1 Integrase-type DNA-binding superfamily protein)

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-31
Identity = 76/148 (51.35%), Postives = 95/148 (64.19%), Query Frame = 1


Query: 28  TSAATESESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAAL 87
           +S+  E +     P +RGVR+R+WGKWVSEIREPRKKSRIWLGT+PTAEMA RAHDVAA+
Sbjct: 4   SSSDKEKKENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAMRAHDVAAM 63

Query: 88  AIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCEDEDTWFDLPDL 147
           +IKG  A LNFP+L   LPRP SLS +D++AAA +AA +          D DT     D 
Sbjct: 64  SIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALM----------DFDTTAFRSDT 123

Query: 148 ITNEFLMGFDHHYYSSASSSSSSSSSQW 176
            T+E          S ++ + S SSS W
Sbjct: 124 ETSETTTSNKMSESSESNETVSFSSSSW 141

[Close]

BLAST of Lsi09G016880 vs. NCBI nr
Match: gi|449445736|ref|XP_004140628.1| (PREDICTED: ethylene-responsive transcription factor ERF039-like [Cucumis sativus])

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 174/214 (81.31%), Postives = 184/214 (85.98%), Query Frame = 1


Query: 1   MTTNSHHSTTSSSAVSS-AVSSRKRQRS-TSAATESES--EESTPKFRGVRLRTWGKWVS 60
           MTTNSHHSTTSSSAVS    +SRKRQRS TS+ATESES  E STPKFRGVRLR WGKWVS
Sbjct: 1   MTTNSHHSTTSSSAVSCLTATSRKRQRSSTSSATESESDQESSTPKFRGVRLRAWGKWVS 60

Query: 61  EIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDI 120
           EIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKH LPRPASLSAKDI
Sbjct: 61  EIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHQLPRPASLSAKDI 120

Query: 121 QAAAAQAAAIKQEPET-TSC--------EDEDTWFDLPDLI-TNEFLMGFDHHYYSSASS 180
           QAAAAQAAA+K EPET TSC        E+E TWFDLPDLI +N FL+G D +Y SS SS
Sbjct: 121 QAAAAQAAALKHEPETPTSCLEEGLEEEEEESTWFDLPDLIVSNGFLLGLDENYSSSCSS 180

Query: 181 SSSSSSSQWQFLADDHDDHHLQWHSDFSHTIFPI 201
           SSSSSSS WQFL DDH+D+H QWHSDFSHTIFP+
Sbjct: 181 SSSSSSS-WQFLVDDHEDNHFQWHSDFSHTIFPV 213

[Close]

BLAST of Lsi09G016880 vs. NCBI nr
Match: gi|659120426|ref|XP_008460188.1| (PREDICTED: ethylene-responsive transcription factor ERF039-like [Cucumis melo])

HSP 1 Score: 302.0 bits (772), Expect = 7.8e-79
Identity = 170/208 (81.73%), Postives = 183/208 (87.98%), Query Frame = 1


Query: 1   MTTNSHHSTTSSSAVSSAVSSRKRQRS-TSAATESESEE--STPKFRGVRLRTWGKWVSE 60
           MTTNSHHSTTSSSA +S    RKRQRS TS+ATESES++  STPKFRGVRLRTWGKWVSE
Sbjct: 1   MTTNSHHSTTSSSATTS----RKRQRSSTSSATESESDQEISTPKFRGVRLRTWGKWVSE 60

Query: 61  IREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQ 120
           IREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKH LPRPASLSAKDIQ
Sbjct: 61  IREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHQLPRPASLSAKDIQ 120

Query: 121 AAAAQAAAIKQEPET-TSC---EDEDTWFDLPDLI-TNEFLMGFDHHYYSSASSSSSSSS 180
           AAAAQAAA+K EPET TSC   E+E TWFDLPDLI +N FL+G D +Y SS SSSSSS+S
Sbjct: 121 AAAAQAAALKHEPETATSCRGEEEESTWFDLPDLIVSNGFLLGLDENYSSSCSSSSSSTS 180

Query: 181 SQWQFLADDHDDHHLQWHSDFSHTIFPI 201
             WQFL DDH+D+H QWHSDFSHTIFP+
Sbjct: 181 --WQFLVDDHEDNHFQWHSDFSHTIFPV 202

[Close]

BLAST of Lsi09G016880 vs. NCBI nr
Match: gi|720026977|ref|XP_010264429.1| (PREDICTED: ethylene-responsive transcription factor ERF039-like [Nelumbo nucifera])

HSP 1 Score: 154.1 bits (388), Expect = 2.6e-34
Identity = 82/131 (62.60%), Postives = 99/131 (75.57%), Query Frame = 1


Query: 15  VSSAVSSRKRQRSTSAATESESEEST-------PKFRGVRLRTWGKWVSEIREPRKKSRI 74
           +S+ ++SR+  +    A E+  ++ T       P +RGVR+R WGKWVSEIREPRKKSRI
Sbjct: 7   ISTEINSRQGLKEVKNANETRRQQKTSSNDGKHPSYRGVRIRNWGKWVSEIREPRKKSRI 66

Query: 75  WLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIK 134
           WLGT+PT EMAARAHDVAALAIKG+ AFLNFP+L H LPRPASLS KDIQAAAA+AAA  
Sbjct: 67  WLGTFPTPEMAARAHDVAALAIKGNAAFLNFPELAHELPRPASLSHKDIQAAAAKAAAAT 126

Query: 135 QEPETTSCEDE 139
            + +  SCE E
Sbjct: 127 FDKQPASCEVE 137

[Close]

BLAST of Lsi09G016880 vs. NCBI nr
Match: gi|970057373|ref|XP_015055334.1| (PREDICTED: ethylene-responsive transcription factor ERF034-like [Solanum pennellii])

HSP 1 Score: 151.4 bits (381), Expect = 1.7e-33
Identity = 79/123 (64.23%), Postives = 91/123 (73.98%), Query Frame = 1


Query: 35  ESEESTPKFRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRA 94
           + ++  P +RGVR R WGKWVSEIREPRKKSRIWLGTY TAEMAARAHDVAALAIKGH A
Sbjct: 55  DHDDKHPTYRGVRKRNWGKWVSEIREPRKKSRIWLGTYSTAEMAARAHDVAALAIKGHSA 114

Query: 95  FLNFPQLKHHLPRPASLSAKDIQAAAAQAAAIK------QEPETTSCEDEDTWFDLPDLI 152
           +LNFP L   LPRP S S KDIQ AAA+AAA K      +   + S + +DT+ DLPDL 
Sbjct: 115 YLNFPYLTDQLPRPTSTSPKDIQIAAAKAAATKFSRNVAESITSPSTDKDDTFLDLPDLS 174

[Close]

BLAST of Lsi09G016880 vs. NCBI nr
Match: gi|527203108|gb|EPS69678.1| (hypothetical protein M569_05091, partial [Genlisea aurea])

HSP 1 Score: 150.6 bits (379), Expect = 2.9e-33
Identity = 76/105 (72.38%), Postives = 84/105 (80.00%), Query Frame = 1


Query: 43  FRGVRLRTWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHRAFLNFPQLK 102
           +RGVR R+WGKWV EIREP+KKSRIWLGTY TAEMAARAHDVAALAIKG  A LNFP L 
Sbjct: 2   YRGVRKRSWGKWVCEIREPKKKSRIWLGTYETAEMAARAHDVAALAIKGRSAHLNFPALA 61

Query: 103 HHLPRPASLSAKDIQAAAAQAAAIKQEPETTSCEDEDTWFDLPDL 148
             LPRPAS S +DIQAAAA+AA I  E   +  ED+D +FDLPDL
Sbjct: 62  EELPRPASTSRRDIQAAAAKAAFIGSESSGSGREDDDAFFDLPDL 106

The following BLAST results are available for this feature:

BLAST of Lsi09G016880 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ERF39_ARATH	4.5e-34	60.90	Ethylene-responsive transcription factor ERF039 OS=Arabidopsis thaliana GN=ERF03...	[more]
ERF38_ARATH	7.7e-34	62.02	Ethylene-responsive transcription factor ERF038 OS=Arabidopsis thaliana GN=ERF03...	[more]
ERF42_ARATH	1.2e-31	51.20	Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF04...	[more]
ERF35_ARATH	3.0e-30	52.12	Ethylene-responsive transcription factor ERF035 OS=Arabidopsis thaliana GN=ERF03...	[more]
ERF37_ARATH	8.8e-30	49.43	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF03...	[more]

BLAST of Lsi09G016880 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAN0_CUCSA	1.4e-79	81.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G104640 PE=4 SV=1	[more]
S8E1X8_9LAMI	2.0e-33	72.38	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05091 PE=4 SV=1	[more]
G7JXD9_MEDTR	7.7e-33	58.02	Ethylene response factor OS=Medicago truncatula GN=MTR_5g012910 PE=4 SV=1	[more]
S8EAS7_9LAMI	1.0e-32	64.71	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_05115 PE=4 SV=1	[more]
A0A151TJA8_CAJCA	1.7e-32	63.79	Ethylene-responsive transcription factor ERF034 family OS=Cajanus cajan GN=KK1_0...	[more]

BLAST of Lsi09G016880 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G16750.1	2.5e-35	60.90	Integrase-type DNA-binding superfamily protein	[more]
AT2G35700.1	4.3e-35	62.02	ERF family protein 38	[more]
AT2G25820.1	6.9e-33	51.20	Integrase-type DNA-binding superfamily protein	[more]
AT3G60490.1	1.7e-31	52.12	Integrase-type DNA-binding superfamily protein	[more]
AT4G32800.1	4.9e-31	51.35	Integrase-type DNA-binding superfamily protein	[more]

BLAST of Lsi09G016880 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445736\|ref\|XP_004140628.1\|	2.1e-79	81.31	PREDICTED: ethylene-responsive transcription factor ERF039-like [Cucumis sativus...	[more]
gi\|659120426\|ref\|XP_008460188.1\|	7.8e-79	81.73	PREDICTED: ethylene-responsive transcription factor ERF039-like [Cucumis melo]	[more]
gi\|720026977\|ref\|XP_010264429.1\|	2.6e-34	62.60	PREDICTED: ethylene-responsive transcription factor ERF039-like [Nelumbo nucifer...	[more]
gi\|970057373\|ref\|XP_015055334.1\|	1.7e-33	64.23	PREDICTED: ethylene-responsive transcription factor ERF034-like [Solanum pennell...	[more]
gi\|527203108\|gb\|EPS69678.1\|	2.9e-33	72.38	hypothetical protein M569_05091, partial [Genlisea aurea]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR016177	DNA-bd_dom_sf
IPR001471	AP2/ERF_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G016880.1	Lsi09G016880.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 43..54 score: 9.0E-10coord: 65..81 score: 9.0
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 42..100 score: 3.8
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 41..92 score: 1.5
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 42..105 score: 8.5
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 42..99 score: 22
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 42..100 score: 1.96
None	No IPR available	PANTHER	PTHR31985	FAMILY NOT NAMED	coord: 3..182 score: 1.9
None	No IPR available	PANTHER	PTHR31985:SF42	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF034	coord: 3..182 score: 1.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G016880	Csa6G104640	Cucumber (Chinese Long) v2	culsiB396
Lsi09G016880	CSPI06G08270	Wild cucumber (PI 183967)	cpilsiB399
Lsi09G016880	Cucsa.121080	Cucumber (Gy14) v1	cgylsiB170
Lsi09G016880	CmoCh17G004950	Cucurbita moschata (Rifu)	cmolsiB320
Lsi09G016880	Cla006719	Watermelon (97103) v1	lsiwmB036
Lsi09G016880	MELO3C022281	Melon (DHL92) v3.5.1	lsimeB017
Lsi09G016880	MELO3C022281.2	Melon (DHL92) v3.6.1	lsimedB019
Lsi09G016880	Cla97C06G111840	Watermelon (97103) v2	lsiwmbB026
Lsi09G016880	CsGy6G008350	Cucumber (Gy14) v2	cgyblsiB362
Lsi09G016880	Carg26728	Silver-seed gourd	carlsiB123
Lsi09G016880	CsaV3_6G008650	Cucumber (Chinese Long) v3	cuclsiB420

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G016880	Cucumber (Gy14) v1	cgylsiB562
Lsi09G016880	Cucurbita maxima (Rimu)	cmalsiB331
Lsi09G016880	Cucurbita maxima (Rimu)	cmalsiB814
Lsi09G016880	Cucurbita moschata (Rifu)	cmolsiB800
Lsi09G016880	Cucurbita pepo (Zucchini)	cpelsiB101
Lsi09G016880	Cucurbita pepo (Zucchini)	cpelsiB251
Lsi09G016880	Wild cucumber (PI 183967)	cpilsiB404
Lsi09G016880	Cucumber (Chinese Long) v2	culsiB402
Lsi09G016880	Watermelon (Charleston Gray)	lsiwcgB029
Lsi09G016880	Cucumber (Gy14) v2	cgyblsiB366
Lsi09G016880	Silver-seed gourd	carlsiB070
Lsi09G016880	Cucumber (Chinese Long) v3	cuclsiB424
Lsi09G016880	Wax gourd	lsiwgoB011