Lsi09G016590 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G016590
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionCalcium-binding EF-hand family protein
Locationchr09 : 25011834 .. 25012262 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGAATCGCGACCTTACTGATTCCGAGCGCGAGGAAACTCCTAATTCTTCAAGCACCGACTCAAAGAAGCCCAGAGGTTCCATGAATGGCAGAAACGCCAAGGATGTGCCGGAGTATGAGAAACAAAGGCTTTCTAGGATCGCCGAGAACAAGAAGAGAATGGAGGCACTTGGGCTGGCCAAATTGGCGACCTCATTTTTGGATTCCTCCAAGAATTTGAGGAAGATTGATAGAAAGGGGAAGCGGAAGCTGGGTGAGGCTGCCGATGAAGATTATAAGCCTGGCAAGGATTCTTCAAGTTCTGAAGATGATGACTCGGAGGAAGGGGATGAAGATTTTGGAAGTGGGAAAGTTTCTGGGTCTCGTGGAATGAAGGTAATCACTCTCCATTTTTGTTATATGTACTTTTTACCATTGTACAAATAA

mRNA sequence

ATGTCGAATCGCGACCTTACTGATTCCGAGCGCGAGGAAACTCCTAATTCTTCAAGCACCGACTCAAAGAAGCCCAGAGGTTCCATGAATGGCAGAAACGCCAAGGATGTGCCGGAGTATGAGAAACAAAGGCTTTCTAGGATCGCCGAGAACAAGAAGAGAATGGAGGCACTTGGGCTGGCCAAATTGGCGACCTCATTTTTGGATTCCTCCAAGAATTTGAGGAAGATTGATAGAAAGGGGAAGCGGAAGCTGGGTGAGGCTGCCGATGAAGATTATAAGCCTGGCAAGGATTCTTCAAGTTCTGAAGATGATGACTCGGAGGAAGGGGATGAAGATTTTGGAAGTGGGAAAGTTTCTGGGTCTCGTGGAATGAAGGTAATCACTCTCCATTTTTGTTATATGTACTTTTTACCATTGTACAAATAA

Coding sequence (CDS)

ATGTCGAATCGCGACCTTACTGATTCCGAGCGCGAGGAAACTCCTAATTCTTCAAGCACCGACTCAAAGAAGCCCAGAGGTTCCATGAATGGCAGAAACGCCAAGGATGTGCCGGAGTATGAGAAACAAAGGCTTTCTAGGATCGCCGAGAACAAGAAGAGAATGGAGGCACTTGGGCTGGCCAAATTGGCGACCTCATTTTTGGATTCCTCCAAGAATTTGAGGAAGATTGATAGAAAGGGGAAGCGGAAGCTGGGTGAGGCTGCCGATGAAGATTATAAGCCTGGCAAGGATTCTTCAAGTTCTGAAGATGATGACTCGGAGGAAGGGGATGAAGATTTTGGAAGTGGGAAAGTTTCTGGGTCTCGTGGAATGAAGGTAATCACTCTCCATTTTTGTTATATGTACTTTTTACCATTGTACAAATAA

Protein sequence

MSNRDLTDSEREETPNSSSTDSKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEALGLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSEDDDSEEGDEDFGSGKVSGSRGMKVITLHFCYMYFLPLYK
Homology
[Close]
BLAST of Lsi09G016590 vs. TrEMBL
Match: A0A0A0KDV1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108450 PE=4 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.9e-46
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 1 

Query: 1   MSNRDLTDSER-EETPNSSSTDSKKP-RGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           MSNRDLTDSE  EETPNSS+T SKK  RGSMNGRN KDVPEYEKQR+SRIAENKKRMEAL
Sbjct: 1   MSNRDLTDSEHDEETPNSSTTHSKKKLRGSMNGRNVKDVPEYEKQRISRIAENKKRMEAL 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSED-DDSEEGDEDFGSG 120
           GLAK+ATSFLDSSKNLRK D KGKRKLGEAAD+DYKPG DSSSSED DDSEEGDEDFGSG
Sbjct: 61  GLAKMATSFLDSSKNLRKTDIKGKRKLGEAADDDYKPGNDSSSSEDEDDSEEGDEDFGSG 120

Query: 121 KVSGSRGMK 127
           KVSGSRG K
Sbjct: 121 KVSGSRGTK 129

[Close]
BLAST of Lsi09G016590 vs. TrEMBL
Match: M5X4Z3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026500mg PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-12
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTDSK---KPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEA 60
           M   DL+D+E EET  +SS++S+   KP      R    V EYEKQRLSRIAEN++RMEA
Sbjct: 1   MPKHDLSDTEHEETSENSSSESEEVGKPSNGQKDRVGSSVSEYEKQRLSRIAENRERMEA 60

Query: 61  LGLAKLATSFLDSSKNLRKIDR---KGKRKLGEAADEDYKPGKDS----SSSEDDDSEEG 120
           LGL K+A+S + S +N ++ ++   KGK K+ E  DE+Y+P ++     SS E+   E+ 
Sbjct: 61  LGLPKIASSVMGSGQNGKRKNKKVQKGKAKVFE-DDEEYRPEEEESCSYSSQEEAMEEDD 120

Query: 121 DEDFGSGKVSGSRGMKV 128
           D+D+   K SGSR  KV
Sbjct: 121 DDDYLGEKTSGSRRKKV 136

[Close]
BLAST of Lsi09G016590 vs. TrEMBL
Match: A0A067H4A1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023146mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTD--SKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           M+  D +DSE EE+ N SS +  S+ P  + NG    ++  YEKQRLSRIAENK RMEA+
Sbjct: 1   MARLDSSDSEPEESENLSSEEEESEAPNINSNGEKEHEISAYEKQRLSRIAENKARMEAM 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSEDDDSEEGDED---FG 120
           GL+KLA+S + S +NL K   KGKRK+ E  DEDY+P  +    ++D+   GD+D   F 
Sbjct: 61  GLSKLASSLMGSPQNLSKC--KGKRKVLE-DDEDYRPNDEDEGEDEDEDGGGDDDDAEFL 120

Query: 121 SGKVSGSRGMK 127
             K S S  MK
Sbjct: 121 GNKASRSYKMK 128

[Close]
BLAST of Lsi09G016590 vs. TrEMBL
Match: A0A067H183_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023146mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTD--SKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           M+  D +DSE EE+ N SS +  S+ P  + NG    ++  YEKQRLSRIAENK RMEA+
Sbjct: 1   MARLDSSDSEPEESENLSSEEEESEAPNINSNGEKEHEISAYEKQRLSRIAENKARMEAM 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSEDDDSEEGDED---FG 120
           GL+KLA+S + S +NL K   KGKRK+ E  DEDY+P  +    ++D+   GD+D   F 
Sbjct: 61  GLSKLASSLMGSPQNLSKC--KGKRKVLE-DDEDYRPNDEDEGEDEDEDGGGDDDDAEFL 120

Query: 121 SGKVSGSRGMK 127
             K S S  MK
Sbjct: 121 GNKASRSYKMK 128

[Close]
BLAST of Lsi09G016590 vs. TrEMBL
Match: A0A067H1M5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023146mg PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.4e-12
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTD--SKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           M+  D +DSE EE+ N SS +  S+ P  + NG    ++  YEKQRLSRIAENK RMEA+
Sbjct: 1   MARLDSSDSEPEESENLSSEEEESEAPNINSNGEKEHEISAYEKQRLSRIAENKARMEAM 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSEDDDSEEGDED---FG 120
           GL+KLA+S + S +NL K   KGKRK+ E  DEDY+P  +    ++D+   GD+D   F 
Sbjct: 61  GLSKLASSLMGSPQNLSKC--KGKRKVLE-DDEDYRPNDEDEGEDEDEDGGGDDDDAEFL 120

Query: 121 SGKVSGSRGMK 127
             K S S  MK
Sbjct: 121 GNKASRSYKMK 128

[Close]
BLAST of Lsi09G016590 vs. TAIR10
Match: AT1G73440.1 (AT1G73440.1 calmodulin-related)

HSP 1 Score: 54.3 bits (129), Expect = 7.1e-08
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 1 

Query: 2   SNRDLTDSEREETPNSSSTDSKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEALGLA 61
           S  + + SERE + +SS  +S+  +G+++        +YEKQRLSRIAENK R++ALG++
Sbjct: 6   SEGESSGSERESSSSSSGNESEPTKGTIS--------KYEKQRLSRIAENKARLDALGIS 65

Query: 62  KLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPG-KDSSSSEDDDS-EEGDED 114
           K A + L  S   +K  R+ KR  GE  D+DY P   D    EDDD  EE DED
Sbjct: 66  KAAKALLSPSPVSKK--RRVKRNSGE-EDDDYTPVIADGDGDEDDDEVEEIDED 108

[Close]
BLAST of Lsi09G016590 vs. NCBI nr
Match: gi|449445469|ref|XP_004140495.1| (PREDICTED: uncharacterized protein LOC101206207 [Cucumis sativus])

HSP 1 Score: 193.4 bits (490), Expect = 2.8e-46
Identity = 114/129 (88.37%), Postives = 118/129 (91.47%), Query Frame = 1 

Query: 1   MSNRDLTDSER-EETPNSSSTDSKKP-RGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           MSNRDLTDSE  EETPNSS+T SKK  RGSMNGRN KDVPEYEKQR+SRIAENKKRMEAL
Sbjct: 1   MSNRDLTDSEHDEETPNSSTTHSKKKLRGSMNGRNVKDVPEYEKQRISRIAENKKRMEAL 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSED-DDSEEGDEDFGSG 120
           GLAK+ATSFLDSSKNLRK D KGKRKLGEAAD+DYKPG DSSSSED DDSEEGDEDFGSG
Sbjct: 61  GLAKMATSFLDSSKNLRKTDIKGKRKLGEAADDDYKPGNDSSSSEDEDDSEEGDEDFGSG 120

Query: 121 KVSGSRGMK 127
           KVSGSRG K
Sbjct: 121 KVSGSRGTK 129

[Close]
BLAST of Lsi09G016590 vs. NCBI nr
Match: gi|659120420|ref|XP_008460184.1| (PREDICTED: uncharacterized protein LOC103499070 [Cucumis melo])

HSP 1 Score: 182.2 bits (461), Expect = 6.4e-43
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = 1 

Query: 1   MSNRDLTDSER-EETPNSSSTDSK-KPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           MSNRDLTDSE  EETPNSS+TDSK K R SMN R+ KDVPEYEKQR+SRI ENKKRMEAL
Sbjct: 1   MSNRDLTDSEHDEETPNSSTTDSKRKLRSSMNCRSVKDVPEYEKQRISRITENKKRMEAL 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSED-DDSEEGDEDFGSG 120
           GL KLATSFLDSSKNLRK DRKGKRKLGEAADEDY+PG+DSSSSED DDSEE DE+FGSG
Sbjct: 61  GLGKLATSFLDSSKNLRKTDRKGKRKLGEAADEDYEPGQDSSSSEDEDDSEEEDEEFGSG 120

Query: 121 KVSGSRGMK 127
           K SGSRG K
Sbjct: 121 KASGSRGTK 129

[Close]
BLAST of Lsi09G016590 vs. NCBI nr
Match: gi|596037646|ref|XP_007219790.1| (hypothetical protein PRUPE_ppa026500mg [Prunus persica])

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-12
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTDSK---KPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEA 60
           M   DL+D+E EET  +SS++S+   KP      R    V EYEKQRLSRIAEN++RMEA
Sbjct: 1   MPKHDLSDTEHEETSENSSSESEEVGKPSNGQKDRVGSSVSEYEKQRLSRIAENRERMEA 60

Query: 61  LGLAKLATSFLDSSKNLRKIDR---KGKRKLGEAADEDYKPGKDS----SSSEDDDSEEG 120
           LGL K+A+S + S +N ++ ++   KGK K+ E  DE+Y+P ++     SS E+   E+ 
Sbjct: 61  LGLPKIASSVMGSGQNGKRKNKKVQKGKAKVFE-DDEEYRPEEEESCSYSSQEEAMEEDD 120

Query: 121 DEDFGSGKVSGSRGMKV 128
           D+D+   K SGSR  KV
Sbjct: 121 DDDYLGEKTSGSRRKKV 136

[Close]
BLAST of Lsi09G016590 vs. NCBI nr
Match: gi|641867041|gb|KDO85725.1| (hypothetical protein CISIN_1g023146mg [Citrus sinensis])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTD--SKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           M+  D +DSE EE+ N SS +  S+ P  + NG    ++  YEKQRLSRIAENK RMEA+
Sbjct: 1   MARLDSSDSEPEESENLSSEEEESEAPNINSNGEKEHEISAYEKQRLSRIAENKARMEAM 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSEDDDSEEGDED---FG 120
           GL+KLA+S + S +NL K   KGKRK+ E  DEDY+P  +    ++D+   GD+D   F 
Sbjct: 61  GLSKLASSLMGSPQNLSKC--KGKRKVLE-DDEDYRPNDEDEGEDEDEDGGGDDDDAEFL 120

Query: 121 SGKVSGSRGMK 127
             K S S  MK
Sbjct: 121 GNKASRSYKMK 128

[Close]
BLAST of Lsi09G016590 vs. NCBI nr
Match: gi|567905662|ref|XP_006445319.1| (hypothetical protein CICLE_v10021511mg [Citrus clementina])

HSP 1 Score: 80.9 bits (198), Expect = 2.0e-12
Identity = 62/131 (47.33%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 1   MSNRDLTDSEREETPNSSSTD--SKKPRGSMNGRNAKDVPEYEKQRLSRIAENKKRMEAL 60
           M+  D +DSE EE+ N SS +  S+ P  + NG    ++  YEKQRLSRIAENK RMEA+
Sbjct: 1   MARLDSSDSEPEESENLSSEEEESEAPNINSNGEKEHEISAYEKQRLSRIAENKARMEAM 60

Query: 61  GLAKLATSFLDSSKNLRKIDRKGKRKLGEAADEDYKPGKDSSSSEDDDSEEGDED---FG 120
           GL+KLA+S + S +NL K   KGKRK+ E  DEDY+P  +    ++D+   GD+D   F 
Sbjct: 61  GLSKLASSLMGSPQNLSKC--KGKRKVLE-DDEDYRPNDEDEGEDEDEDGGGDDDDAEFL 120

Query: 121 SGKVSGSRGMK 127
             K S S  MK
Sbjct: 121 GNKASRSYKMK 128

The following BLAST results are available for this feature:
BLAST of Lsi09G016590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G016590 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDV1_CUCSA1.9e-4688.37Uncharacterized protein OS=Cucumis sativus GN=Csa_6G108450 PE=4 SV=1[more]
M5X4Z3_PRUPE1.1e-1245.26Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026500mg PE=4 SV=1[more]
A0A067H4A1_CITSI1.4e-1247.33Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023146mg PE=4 SV=1[more]
A0A067H183_CITSI1.4e-1247.33Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023146mg PE=4 SV=1[more]
A0A067H1M5_CITSI1.4e-1247.33Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023146mg PE=4 SV=1[more]
BLAST of Lsi09G016590 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73440.17.1e-0843.86 calmodulin-related[more]
BLAST of Lsi09G016590 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449445469|ref|XP_004140495.1|2.8e-4688.37PREDICTED: uncharacterized protein LOC101206207 [Cucumis sativus][more]
gi|659120420|ref|XP_008460184.1|6.4e-4384.50PREDICTED: uncharacterized protein LOC103499070 [Cucumis melo][more]
gi|596037646|ref|XP_007219790.1|1.5e-1245.26hypothetical protein PRUPE_ppa026500mg [Prunus persica][more]
gi|641867041|gb|KDO85725.1|2.0e-1247.33hypothetical protein CISIN_1g023146mg [Citrus sinensis][more]
gi|567905662|ref|XP_006445319.1|2.0e-1247.33hypothetical protein CICLE_v10021511mg [Citrus clementina][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G016590.1Lsi09G016590.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G016590Csa6G108450Cucumber (Chinese Long) v2culsiB398
Lsi09G016590CSPI06G08620Wild cucumber (PI 183967)cpilsiB401
Lsi09G016590Cucsa.120780Cucumber (Gy14) v1cgylsiB171
Lsi09G016590CmaCh17G004990Cucurbita maxima (Rimu)cmalsiB336
Lsi09G016590CmoCh17G004720Cucurbita moschata (Rifu)cmolsiB326
Lsi09G016590Cla006687Watermelon (97103) v1lsiwmB042
Lsi09G016590ClCG06G002820Watermelon (Charleston Gray)lsiwcgB026
Lsi09G016590MELO3C022245.2Melon (DHL92) v3.6.1lsimedB020
Lsi09G016590Cla97C06G112190Watermelon (97103) v2lsiwmbB024
Lsi09G016590Bhi12G001935Wax gourdlsiwgoB034
Lsi09G016590Cp4.1LG12g04270Cucurbita pepo (Zucchini)cpelsiB105
Lsi09G016590CsGy6G008720Cucumber (Gy14) v2cgyblsiB364
Lsi09G016590Carg26673Silver-seed gourdcarlsiB821
Lsi09G016590CsaV3_6G008990Cucumber (Chinese Long) v3cuclsiB422
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G016590Cucumber (Gy14) v1cgylsiB169
Lsi09G016590Cucurbita maxima (Rimu)cmalsiB331
Lsi09G016590Cucurbita moschata (Rifu)cmolsiB320
Lsi09G016590Cucurbita pepo (Zucchini)cpelsiB101
Lsi09G016590Wild cucumber (PI 183967)cpilsiB404
Lsi09G016590Cucumber (Chinese Long) v2culsiB402
Lsi09G016590Melon (DHL92) v3.5.1lsimeB017
Lsi09G016590Melon (DHL92) v3.5.1lsimeB018
Lsi09G016590Watermelon (Charleston Gray)lsiwcgB029
Lsi09G016590Watermelon (97103) v1lsiwmB036
Lsi09G016590Cucumber (Gy14) v2cgyblsiB366
Lsi09G016590Melon (DHL92) v3.6.1lsimedB019
Lsi09G016590Silver-seed gourdcarlsiB820
Lsi09G016590Cucumber (Chinese Long) v3cuclsiB424
Lsi09G016590Watermelon (97103) v2lsiwmbB026
Lsi09G016590Wax gourdlsiwgoB011