Lsi09G002500 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G002500
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 2619331 .. 2619562 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGTCTTGTAAGAAATAATACGACGCCGTTTCCACAAATTCCGAGACCCTCTACAACCCAGTACGACGTCGTACGTAGCACAATCCAAGCCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAAATCCAATACCCATAA

mRNA sequence

ATGGCAGAAATAATACGACGCCGTTTCCACAAATTCCGAGACCCTCTACAACCCAGTACGACGTCGTACGTAGCACAATCCAAGCCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAAATCCAATACCCATAA

Coding sequence (CDS)

ATGGCAGAAATAATACGACGCCGTTTCCACAAATTCCGAGACCCTCTACAACCCAGTACGACGTCGTACGTAGCACAATCCAAGCCCAAAACTGCGAAGGGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGCCATTAATCAATCCAAAATCCAATACCCATAA

Protein sequence

MAEIIRRRFHKFRDPLQPSTTSYVAQSKPKTAKGNMELGQSEGKQPYNCLSVKLSSCKLAVHFAINQSKIQYP
Homology
[Close]
BLAST of Lsi09G002500 vs. TrEMBL
Match: A0A0A0KK84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153050 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.5e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 

Query: 1  MAEIIRRRFHKFRDPLQPSTTSYVAQSKPKTAKGNMELGQSEGKQPYNCLSVKLSSCKLA 60
          +  +IRRRFHK+RDPL PSTTSY AQS+PKTAK NMELGQSEGKQPYNCLSVKLSSCKLA
Sbjct: 4  LVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSCKLA 63

Query: 61 VHFAINQSKIQYP 74
          VHF INQSKIQYP
Sbjct: 64 VHFVINQSKIQYP 76

[Close]
BLAST of Lsi09G002500 vs. NCBI nr
Match: gi|700194913|gb|KGN50090.1| (hypothetical protein Csa_5G153050 [Cucumis sativus])

HSP 1 Score: 134.4 bits (337), Expect = 7.9e-29
Identity = 63/73 (86.30%), Postives = 67/73 (91.78%), Query Frame = 1 

Query: 1  MAEIIRRRFHKFRDPLQPSTTSYVAQSKPKTAKGNMELGQSEGKQPYNCLSVKLSSCKLA 60
          +  +IRRRFHK+RDPL PSTTSY AQS+PKTAK NMELGQSEGKQPYNCLSVKLSSCKLA
Sbjct: 4  LVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSCKLA 63

Query: 61 VHFAINQSKIQYP 74
          VHF INQSKIQYP
Sbjct: 64 VHFVINQSKIQYP 76

The following BLAST results are available for this feature:
BLAST of Lsi09G002500 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi09G002500 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK84_CUCSA5.5e-2986.30Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153050 PE=4 SV=1[more]
BLAST of Lsi09G002500 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi09G002500 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194913|gb|KGN50090.1|7.9e-2986.30hypothetical protein Csa_5G153050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G002500.1Lsi09G002500.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi09G002500Csa5G153050Cucumber (Chinese Long) v2culsiB322
Lsi09G002500CSPI05G05340Wild cucumber (PI 183967)cpilsiB322
Lsi09G002500MELO3C005682Melon (DHL92) v3.5.1lsimeB012
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi09G002500Watermelon (97103) v2lsiwmbB007
Lsi09G002500Watermelon (97103) v2lsiwmbB025
Lsi09G002500Wax gourdlsiwgoB022
Lsi09G002500Bottle gourd (USVL1VR-Ls)lsilsiB001
Lsi09G002500Bottle gourd (USVL1VR-Ls)lsilsiB015
Lsi09G002500Cucumber (Gy14) v1cgylsiB213
Lsi09G002500Cucumber (Gy14) v1cgylsiB487
Lsi09G002500Cucurbita maxima (Rimu)cmalsiB267
Lsi09G002500Cucurbita maxima (Rimu)cmalsiB340
Lsi09G002500Cucurbita maxima (Rimu)cmalsiB530
Lsi09G002500Cucurbita moschata (Rifu)cmolsiB255
Lsi09G002500Cucurbita moschata (Rifu)cmolsiB516
Lsi09G002500Cucurbita pepo (Zucchini)cpelsiB131
Lsi09G002500Cucurbita pepo (Zucchini)cpelsiB582
Lsi09G002500Wild cucumber (PI 183967)cpilsiB408
Lsi09G002500Cucumber (Chinese Long) v2culsiB406
Lsi09G002500Melon (DHL92) v3.5.1lsimeB019
Lsi09G002500Watermelon (Charleston Gray)lsiwcgB008
Lsi09G002500Watermelon (Charleston Gray)lsiwcgB027
Lsi09G002500Watermelon (97103) v1lsiwmB027
Lsi09G002500Cucumber (Gy14) v2cgyblsiB138
Lsi09G002500Cucumber (Gy14) v2cgyblsiB294
Lsi09G002500Cucumber (Gy14) v2cgyblsiB371
Lsi09G002500Melon (DHL92) v3.6.1lsimedB012
Lsi09G002500Melon (DHL92) v3.6.1lsimedB021
Lsi09G002500Silver-seed gourdcarlsiB836
Lsi09G002500Silver-seed gourdcarlsiB851
Lsi09G002500Cucumber (Chinese Long) v3cuclsiB166
Lsi09G002500Cucumber (Chinese Long) v3cuclsiB345
Lsi09G002500Cucumber (Chinese Long) v3cuclsiB429