Csa5G153050 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa5G153050
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr5 : 4999744 .. 4999974 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGGTCTTGTAGCAGTAATACGACGCCGTTTCCACAAATACCGAGACCCTCTACACCCGAGTACGACGTCGTACTCAGCACAATCCGAGCCCAAAACTGCGAAGAGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGTCATTAATCAATCCAAAATCCAATACCCATAA

mRNA sequence

ATGGCGGGTCTTGTAGCAGTAATACGACGCCGTTTCCACAAATACCGAGACCCTCTACACCCGAGTACGACGTCGTACTCAGCACAATCCGAGCCCAAAACTGCGAAGAGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGTCATTAATCAATCCAAAATCCAATACCCATAA

Coding sequence (CDS)

ATGGCGGGTCTTGTAGCAGTAATACGACGCCGTTTCCACAAATACCGAGACCCTCTACACCCGAGTACGACGTCGTACTCAGCACAATCCGAGCCCAAAACTGCGAAGAGTAACATGGAGTTGGGGCAGAGCGAGGGAAAGCAACCTTACAATTGCTTGAGTGTAAAGCTTTCTTCCTGCAAATTGGCAGTCCATTTCGTCATTAATCAATCCAAAATCCAATACCCATAA

Protein sequence

MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSCKLAVHFVINQSKIQYP*
Homology
[Close]
BLAST of Csa5G153050 vs. TrEMBL
Match: A0A0A0KK84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153050 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.1e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSC 60
          MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSC
Sbjct: 1  MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSC 60

Query: 61 KLAVHFVINQSKIQYP 77
          KLAVHFVINQSKIQYP
Sbjct: 61 KLAVHFVINQSKIQYP 76

[Close]
BLAST of Csa5G153050 vs. NCBI nr
Match: gi|700194913|gb|KGN50090.1| (hypothetical protein Csa_5G153050 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 1 

Query: 1  MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSC 60
          MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSC
Sbjct: 1  MAGLVAVIRRRFHKYRDPLHPSTTSYSAQSEPKTAKSNMELGQSEGKQPYNCLSVKLSSC 60

Query: 61 KLAVHFVINQSKIQYP 77
          KLAVHFVINQSKIQYP
Sbjct: 61 KLAVHFVINQSKIQYP 76

The following BLAST results are available for this feature:
BLAST of Csa5G153050 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KK84_CUCSA1.1e-35100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_5G153050 PE=4 SV=1[more]
BLAST of Csa5G153050 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700194913|gb|KGN50090.1|1.6e-35100.00hypothetical protein Csa_5G153050 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa5G153050.1Csa5G153050.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa5G153050MELO3C005682Melon (DHL92) v3.5.1cumeB357
Csa5G153050Lsi09G002500Bottle gourd (USVL1VR-Ls)culsiB322
Csa5G153050CSPI05G05340Wild cucumber (PI 183967)cpicuB240
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa5G153050Cucurbita moschata (Rifu)cmocuB598
Csa5G153050Melon (DHL92) v3.5.1cumeB385
Csa5G153050Watermelon (Charleston Gray)cuwcgB364
Csa5G153050Watermelon (Charleston Gray)cuwcgB393
Csa5G153050Watermelon (Charleston Gray)cuwcgB399
Csa5G153050Watermelon (97103) v1cuwmB399
Csa5G153050Watermelon (97103) v1cuwmB408
Csa5G153050Cucurbita pepo (Zucchini)cpecuB174
Csa5G153050Cucurbita pepo (Zucchini)cpecuB736
Csa5G153050Bottle gourd (USVL1VR-Ls)culsiB333
Csa5G153050Bottle gourd (USVL1VR-Ls)culsiB381
Csa5G153050Cucumber (Gy14) v2cgybcuB126
Csa5G153050Cucumber (Gy14) v2cgybcuB224
Csa5G153050Cucumber (Gy14) v2cgybcuB278
Csa5G153050Melon (DHL92) v3.6.1cumedB336
Csa5G153050Melon (DHL92) v3.6.1cumedB369
Csa5G153050Silver-seed gourdcarcuB0939
Csa5G153050Silver-seed gourdcarcuB0954
Csa5G153050Watermelon (97103) v2cuwmbB336
Csa5G153050Watermelon (97103) v2cuwmbB382
Csa5G153050Watermelon (97103) v2cuwmbB389
Csa5G153050Wax gourdcuwgoB451
Csa5G153050Cucumber (Chinese Long) v2cucuB097
Csa5G153050Cucumber (Chinese Long) v2cucuB164
Csa5G153050Cucumber (Gy14) v1cgycuB194
Csa5G153050Cucumber (Gy14) v1cgycuB434
Csa5G153050Cucurbita maxima (Rimu)cmacuB298
Csa5G153050Cucurbita maxima (Rimu)cmacuB366
Csa5G153050Cucurbita maxima (Rimu)cmacuB608
Csa5G153050Cucurbita moschata (Rifu)cmocuB286