Lsi09G001080 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi09G001080
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING-H2 finger protein 2B
Locationchr09 : 1026795 .. 1027343 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGGTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTTGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCAGTGCCGATGATGATCCAAGTGATAGCCGGCAGGAGGAACTCCAGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCAGCGTTGGTGTTCTCGGCGGATATGAAGCCGAAACTCGCCGGTGCTGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCATCCTCTGTAAGCGGCGGCGACGGCGACCCCTGA

mRNA sequence

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGGTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTTGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCAGTGCCGATGATGATCCAAGTGATAGCCGGCAGGAGGAACTCCAGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCAGCGTTGGTGTTCTCGGCGGATATGAAGCCGAAACTCGCCGGTGCTGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCATCCTCTGTAAGCGGCGGCGACGGCGACCCCTGA

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCCGACGACACCATCCGGTTCCAACCACCGCCATCGCCTCCGTGCCACGACCTCCGCGCCTGTACTTGGCGGCCGTACTCCAATTCCAGAGACTTTGAAGCCAACGCCGCCGTCGTCGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACCGCCATCCGCTGCTTCCTCCGTCGTCGCGGCAGTGCCGATGATGATCCAAGTGATAGCCGGCAGGAGGAACTCCAGGACGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCAGCGTTGGTGTTCTCGGCGGATATGAAGCCGAAACTCGCCGGTGCTGAGGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTTGCATTCTTCTTGTCCGACTTGCCGCCGTAGCTACCTCCCTCCCTCGCCGTCATCCTCTGTAAGCGGCGGCGACGGCGACCCCTGA

Protein sequence

MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDGDP
Homology
[Close]
BLAST of Lsi09G001080 vs. Swiss-Prot
Match: ATL79_ARATH (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.9e-33
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 1 

Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDP 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDH 76

Query: 79  SDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+D+  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  KPD--PEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]
BLAST of Lsi09G001080 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 1 

Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEELQDETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR + ++DP D+     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 95  TLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
            L    K+ P   +S ++K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  AL----KVIPVDSYSPELKMKAT----ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]
BLAST of Lsi09G001080 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 9.4e-23
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 1 

Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEE--LQDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR ++DD  S++      L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSA---DMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFH 154
             T + K  LK  P  ++ +   DMK        EC ICL +F +GE++RVL  C HGFH
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA------TECLICLGDFEDGEKVRVLPKCNHGFH 144

Query: 155 VQCIQTWLILHSSCPTCRRSYLPPSPS-SSVSGGDGD 182
           V+CI TWL+  SSCPTCR+S L   PS  +VS  D D
Sbjct: 145 VRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRDED 175

[Close]
BLAST of Lsi09G001080 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.8e-21
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = 1 

Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR        PS++  +       
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLV---PSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G + EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]
BLAST of Lsi09G001080 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 2.8e-19
Identity = 60/158 (37.97%), Postives = 81/158 (51.27%), Query Frame = 1 

Query: 16  PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRC-FLRRRGSA 75
           PPP P    + A            E++  V++  LLC LIC   L   +RC +LRR  + 
Sbjct: 13  PPPQPSEEMIAA------------ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAG 72

Query: 76  DDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAE----AECTICLTEFSE 135
            D PS ++  + +          L+  P   F+A      A AE     EC ICLT+F++
Sbjct: 73  GDSPSPNKGLKKK---------ALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFAD 132

Query: 136 GEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLP 169
           GEEIRVL +C H FHV+CI  WL+  SSCP+CRR   P
Sbjct: 133 GEEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149

[Close]
BLAST of Lsi09G001080 vs. TrEMBL
Match: A0A0A0KNJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146260 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 2.5e-94
Identity = 169/182 (92.86%), Postives = 178/182 (97.80%), Query Frame = 1 

Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD SDSRQEEL +ETKPTL+DKLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]
BLAST of Lsi09G001080 vs. TrEMBL
Match: A0A059CJF0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02538 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.9e-40
Identity = 99/188 (52.66%), Postives = 113/188 (60.11%), Query Frame = 1 

Query: 3   PTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNT 62
           P P      +  QP P+  C DL +C W PYS S DFEANAA+++I+LLCGLICALALNT
Sbjct: 13  PAPRTPRHLVPPQPLPATTC-DLPSCRWHPYSASGDFEANAAMILIVLLCGLICALALNT 72

Query: 63  AIRCFL------------RRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADM 122
           AIRCFL            RRR     +  +  +EE Q E  P L D   MA   V  A  
Sbjct: 73  AIRCFLGGHGRGRPAAAHRRRPQQGQEEEEEEEEEQQPE--PKLGDSDLMAAPAVTYAPG 132

Query: 123 KPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPS 179
             KLAG EAEC ICLTEF EG+ IRVLA C HGFHV+CI+ WL  H SCPTCR S +   
Sbjct: 133 VTKLAGTEAECAICLTEFDEGDGIRVLATCSHGFHVECIERWLRSHKSCPTCRSSLVVDR 192

[Close]
BLAST of Lsi09G001080 vs. TrEMBL
Match: M5WVF0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011056mg PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 1.7e-39
Identity = 98/172 (56.98%), Postives = 114/172 (66.28%), Query Frame = 1 

Query: 16  PPPSPPCHDL-RACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSA 75
           PPP+     +   C W PYS S++FEANAA+V+IILL  LICAL LN AIRCFLR  GS 
Sbjct: 34  PPPTRQTTCVSHTCRWWPYSGSKEFEANAAMVIIILLSALICALGLNAAIRCFLRGGGSD 93

Query: 76  D-------DDPS---DSRQEELQDETKPTL--VDKLKMAPALVFSADMKPKLAGAEAECT 135
           D       DD S    ++QE +Q + K  +  V  L+ AP L +SA+MK  LAGAEAEC 
Sbjct: 94  DNNSPRDNDDSSHLPQTQQELVQAQQKSNVAGVSCLEGAPELFYSAEMKATLAGAEAECA 153

Query: 136 ICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 175
           ICL+EF EGE IRVL  CKHGFH  CIQ WL  HSSCPTCRR+ LP SP  S
Sbjct: 154 ICLSEFVEGEGIRVLGRCKHGFHTHCIQEWLSSHSSCPTCRRTCLPQSPPPS 205

[Close]
BLAST of Lsi09G001080 vs. TrEMBL
Match: A0A061G1R4_THECC (RING-H2 finger protein ATL79, putative OS=Theobroma cacao GN=TCM_015567 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.9e-38
Identity = 98/190 (51.58%), Postives = 115/190 (60.53%), Query Frame = 1 

Query: 1   MRPTPLD-ADDTIRFQPPPSPPCHDLRA----------CTWRPYSNSRDFEANAAVVVII 60
           MRP P + A   I   PP S     L +          C WRPYS+S DFEANAA+V+II
Sbjct: 1   MRPPPAETAQHLIHMSPPLSSGEPQLSSTSTSTCNPHTCGWRPYSSSNDFEANAAMVLII 60

Query: 61  LLCGLICALALNTAIRCFLRRRGSA------DDDPSDSRQEELQDETKPTLVDKLKMAPA 120
           L C LIC+LALN AIRCFLR  G        ++ P   ++ E +          +  AP 
Sbjct: 61  LFCALICSLALNAAIRCFLRGGGGRPRQFRHNNIPQTQQELEQRKPVPEVAAASMVAAPT 120

Query: 121 LVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCR 174
           LV++  +  KLAGAEAEC ICL+EF EGE I+VLA CKHGFHVQCIQ WL  H SCPTCR
Sbjct: 121 LVYTTGL--KLAGAEAECAICLSEFVEGEGIQVLAKCKHGFHVQCIQQWLSSHFSCPTCR 180

[Close]
BLAST of Lsi09G001080 vs. TrEMBL
Match: B9GJJ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45800g PE=4 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 9.5e-38
Identity = 96/185 (51.89%), Postives = 119/185 (64.32%), Query Frame = 1 

Query: 1   MRPTPLDAD----DTIRFQPPP----SPPCH-DLRACTWRPYSNSRDFEANAAVVVIILL 60
           MRP PL+A+    +     PPP    +P C   + +C W PYSNS DF AN A+++IILL
Sbjct: 1   MRPAPLEAEAAAANISHLSPPPLHSRAPSCDPQVHSCKWWPYSNSNDFGANTAMILIILL 60

Query: 61  CGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETKP---TLVDKLKMAPALVFSA 120
           C LICAL LNTAIR FLR    ++++ S  R  EL+++ KP     +  L +A   V+SA
Sbjct: 61  CALICALVLNTAIRWFLR----SNNNNSSDRLGELEEQRKPKDEADMATLVLATTQVYSA 120

Query: 121 DMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLP 174
            M  KL G EA+C ICL+EF EGE IRVL  C HGFHV CI+ WL  HSSCPTCRRS L 
Sbjct: 121 GM--KLGGVEADCAICLSEFVEGEGIRVLGRCDHGFHVLCIEKWLSSHSSCPTCRRSCLA 179

[Close]
BLAST of Lsi09G001080 vs. TAIR10
Match: AT5G47610.1 (AT5G47610.1 RING/U-box superfamily protein)

HSP 1 Score: 142.1 bits (357), Expect = 3.3e-34
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 1 

Query: 19  SPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDP 78
           +P C+    C W+PYSNS DF ANA+V++I+++  LICAL+L  AIRCFLR     +DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDH 76

Query: 79  SDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+D+  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  KPD--PEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLILHSSCPTCRRSYL---PPSPSSSVS 177
            C+HGFHV+CI  WL   SSCPTCR S       +PSS ++
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTSIFSQHSETPSSHIN 165

[Close]
BLAST of Lsi09G001080 vs. TAIR10
Match: AT4G17245.1 (AT4G17245.1 RING/U-box superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 74/158 (46.84%), Postives = 90/158 (56.96%), Query Frame = 1 

Query: 15  QPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSA 74
           QP  +  C    +C W+PYS+S DF ANA +++IIL C  IC L+L+ AIRC LR     
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRPVLQH 69

Query: 75  DDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEI 134
              P D   E    +  PTLV     +P L         LAG EAEC ICL+EF +G+ +
Sbjct: 70  VPKP-DPDLEATHPDAPPTLV----YSPGL--------NLAGNEAECIICLSEFQDGDTL 129

Query: 135 RVLAICKHGFHVQCIQTWL-ILHSSCPTCRRSYLPPSP 172
           RVL  CKHGFHV CIQ WL   HSSCPTCR +     P
Sbjct: 130 RVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]
BLAST of Lsi09G001080 vs. TAIR10
Match: AT5G05280.1 (AT5G05280.1 RING/U-box superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.2e-25
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 1 

Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEELQDETKP 94
           N    + +  +++  LLC LICAL +N+ +RC LR  RR + ++DP D+     +   K 
Sbjct: 33  NIASMDTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKR 92

Query: 95  TLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 154
            L    K+ P   +S ++K K      EC ICL +F EGE +RVL  C HGFHV+CI TW
Sbjct: 93  AL----KVIPVDSYSPELKMKAT----ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTW 152

Query: 155 LILHSSCPTCRRSYLP-PSPSSSVSGGD 180
           L+ HSSCPTCR+S L   +P++    GD
Sbjct: 153 LLSHSSCPTCRQSLLEHQTPANGSRRGD 172

[Close]
BLAST of Lsi09G001080 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 108.2 bits (269), Expect = 5.3e-24
Identity = 69/157 (43.95%), Postives = 92/157 (58.60%), Query Frame = 1 

Query: 35  NSRDFEANAAVVVIILLCGLICALALNTAIRCFLR--RRGSADDDPSDSRQEE--LQDET 94
           N   F+ N  +++  LLC LICAL+LN+A+RC LR  RR ++DD  S++      L    
Sbjct: 25  NDTYFDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLA 84

Query: 95  KPTLVDK--LKMAPALVFSA---DMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFH 154
             T + K  LK  P  ++ +   DMK        EC ICL +F +GE++RVL  C HGFH
Sbjct: 85  AATGLKKQALKQIPVGLYGSGIIDMKA------TECLICLGDFEDGEKVRVLPKCNHGFH 144

Query: 155 VQCIQTWLILHSSCPTCRRSYLPPSPS-SSVSGGDGD 182
           V+CI TWL+  SSCPTCR+S L   PS  +VS  D D
Sbjct: 145 VRCIDTWLLSRSSCPTCRQSLLLEQPSPMAVSRRDED 175

[Close]
BLAST of Lsi09G001080 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-22
Identity = 53/132 (40.15%), Postives = 73/132 (55.30%), Query Frame = 1 

Query: 32  PYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSADDDPSDSRQEELQDETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR        PS++  +       
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALRCSNLV---PSEAGGDNYPVRLT 104

Query: 92  PTLVDKLKMAPALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQT 151
            T V +  +      S   +  L G + EC ICL+EF   E +++L  C HGFHV+CI  
Sbjct: 105 NTGVKRKALKSFQTVSYSTELNLPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCIDK 164

Query: 152 WLILHSSCPTCR 164
           WL  HSSCPTCR
Sbjct: 165 WLSSHSSCPTCR 173

[Close]
BLAST of Lsi09G001080 vs. NCBI nr
Match: gi|659074211|ref|XP_008437481.1| (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo])

HSP 1 Score: 356.7 bits (914), Expect = 2.4e-95
Identity = 171/182 (93.96%), Postives = 180/182 (98.90%), Query Frame = 1 

Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+T+RFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD +DSRQEELQ+ETKPTLV+KLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSSVSGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]
BLAST of Lsi09G001080 vs. NCBI nr
Match: gi|449456456|ref|XP_004145965.1| (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis sativus])

HSP 1 Score: 352.8 bits (904), Expect = 3.5e-94
Identity = 169/182 (92.86%), Postives = 178/182 (97.80%), Query Frame = 1 

Query: 1   MRPTPLDADDTIRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDT+RFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGSADDDPSDSRQEELQDETKPTLVDKLKMAPALVFSADMKPKLAGAEAE 120
           NTAIRCFLRRRG++DDD SDSRQEEL +ETKPTL+DKLKMAPALVFSA+MKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSSVSGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLI HSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 DP 183
           +P
Sbjct: 181 NP 182

[Close]
BLAST of Lsi09G001080 vs. NCBI nr
Match: gi|694360849|ref|XP_009360247.1| (PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri])

HSP 1 Score: 185.7 bits (470), Expect = 7.4e-44
Identity = 95/166 (57.23%), Postives = 116/166 (69.88%), Query Frame = 1 

Query: 16  PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSAD 75
           PP  P   D  AC W PYS S++FEANAA+++I+LLC LICAL LN AIRCFLR   +  
Sbjct: 29  PPAGPTTCDSHACRWWPYSGSKEFEANAAMIIIVLLCALICALGLNAAIRCFLRGGSTNP 88

Query: 76  DDPSDS----RQEELQDETKPTLVDK---LKMAPALVFSADMKPKLAGAEAECTICLTEF 135
            D  ++    RQ+EL D  + + V     L+ APA++++A+MK KLAG EAEC ICL+EF
Sbjct: 89  SDRQNNSAPQRQQELVDVQQKSNVAAAKCLEAAPAVIYTAEMKAKLAGVEAECAICLSEF 148

Query: 136 SEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 175
            EGE IRV+  CKHGFH QCIQ WL  HSSCPTCRR+ LP SPS S
Sbjct: 149 EEGEGIRVIGRCKHGFHAQCIQEWLSSHSSCPTCRRTCLPQSPSQS 194

[Close]
BLAST of Lsi09G001080 vs. NCBI nr
Match: gi|658023180|ref|XP_008346994.1| (PREDICTED: RING-H2 finger protein ATL79-like [Malus domestica])

HSP 1 Score: 179.5 bits (454), Expect = 5.3e-42
Identity = 94/170 (55.29%), Postives = 113/170 (66.47%), Query Frame = 1 

Query: 16  PPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGSAD 75
           PP  P      AC W PYS S++FEANAA+++I+LLC LICAL LN AIRCF+R      
Sbjct: 29  PPAGPTTCGSHACRWWPYSGSKEFEANAAMIIIVLLCALICALGLNAAIRCFVR---GGS 88

Query: 76  DDPSDSRQEELQDETKPTLVDK-----------LKMAPALVFSADMKPKLAGAEAECTIC 135
            +PSD RQ     + +  LVD            L+ APA++++A+MK KLAG EAEC IC
Sbjct: 89  TNPSD-RQNNSAPQRQQALVDVQQKSNVAAAKCLEAAPAVIYTAEMKAKLAGVEAECAIC 148

Query: 136 LTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCPTCRRSYLPPSPSSS 175
           L+EF EGE IRV+  CKHGFH QCIQ WL  HSSCPTCRR+ LP SPS S
Sbjct: 149 LSEFVEGEGIRVIGRCKHGFHAQCIQEWLSSHSSCPTCRRTCLPQSPSQS 194

[Close]
BLAST of Lsi09G001080 vs. NCBI nr
Match: gi|694396836|ref|XP_009373686.1| (PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri])

HSP 1 Score: 176.0 bits (445), Expect = 5.9e-41
Identity = 103/194 (53.09%), Postives = 125/194 (64.43%), Query Frame = 1 

Query: 1   MRPTP---LDADDT-----IRFQPP-PSPPCHDL----RACTWRPYSNSRDFEANAAVVV 60
           MRP P   L A +      I F PP PSPP          C W PYS S++FEANAA+++
Sbjct: 1   MRPQPTVRLSAGEVVEFGLIHFSPPLPSPPTGPTTCVSHTCRWWPYSGSKEFEANAAMII 60

Query: 61  IILLCGLICALALNTAIRCFLRR-RGSADDDPSDS----RQE--ELQDETKPTLVDKLKM 120
           I+LL  LI AL LN AIRCFLR  RG+  D  ++S    RQE  ++Q ++       L+ 
Sbjct: 61  IVLLSALISALGLNAAIRCFLRGGRGNPSDRENNSVPQSRQELVDVQHKSNVATASCLEA 120

Query: 121 APALVFSADMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLILHSSCP 175
           AP ++++A+MK KLAG EAEC ICL+EF EGE IRVL  CKHGFH QCIQ WL  HSSCP
Sbjct: 121 APTVIYTAEMKAKLAGVEAECAICLSEFVEGEGIRVLRRCKHGFHAQCIQKWLSSHSSCP 180

The following BLAST results are available for this feature:
BLAST of Lsi09G001080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL79_ARATH5.9e-3348.45RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2 SV=1[more]
ATL73_ARATH1.5e-2341.89RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1[more]
ATL72_ARATH9.4e-2343.95RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
ATL78_ARATH1.8e-2140.15RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL44_ARATH2.8e-1937.97Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2... [more]
BLAST of Lsi09G001080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNJ7_CUCSA2.5e-9492.86Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146260 PE=4 SV=1[more]
A0A059CJF0_EUCGR5.9e-4052.66Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02538 PE=4 SV=1[more]
M5WVF0_PRUPE1.7e-3956.98Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011056mg PE=4 SV=1[more]
A0A061G1R4_THECC1.9e-3851.58RING-H2 finger protein ATL79, putative OS=Theobroma cacao GN=TCM_015567 PE=4 SV=... [more]
B9GJJ3_POPTR9.5e-3851.89Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45800g PE=4 SV=2[more]
BLAST of Lsi09G001080 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47610.13.3e-3448.45 RING/U-box superfamily protein[more]
AT4G17245.11.6e-2846.84 RING/U-box superfamily protein[more]
AT5G05280.18.2e-2541.89 RING/U-box superfamily protein[more]
AT3G10910.15.3e-2443.95 RING/U-box superfamily protein[more]
AT1G49230.11.0e-2240.15 RING/U-box superfamily protein[more]
BLAST of Lsi09G001080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659074211|ref|XP_008437481.1|2.4e-9593.96PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo][more]
gi|449456456|ref|XP_004145965.1|3.5e-9492.86PREDICTED: RING-H2 finger protein ATL79-like [Cucumis sativus][more]
gi|694360849|ref|XP_009360247.1|7.4e-4457.23PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri][more]
gi|658023180|ref|XP_008346994.1|5.3e-4255.29PREDICTED: RING-H2 finger protein ATL79-like [Malus domestica][more]
gi|694396836|ref|XP_009373686.1|5.9e-4153.09PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G001080.1Lsi09G001080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 120..163
score: 1.3
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..162
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 121..163
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 118..165
score: 1.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 31..165
score: 9.2
NoneNo IPR availablePANTHERPTHR14155:SF74RING-H2 FINGER PROTEIN ATL45-RELATEDcoord: 31..165
score: 9.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 120..169
score: 1.74