CSPI05G04000 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI05G04000
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionRING-H2 finger protein ATL79, putative
LocationChr5 : 4013310 .. 4014098 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGATTTTAGTTTTTCTTGTCCCATTTATTATATAGTATCTTTCATCCGATGCGATTCACTCAATTCCTCTCTTTTAGAAGTGAAGAAAGAGAGAGAAAATGCGGCCAACTCCTTTAGACGCCGATGACACCGTCCGCTTCCAACCACCGCCATCGCCTCCCTGCCACGACCTCCGCGCCTGTACTTGGCGTCCGTACTCCAGTTCCAGAGATTTCGAAGCCAACGCCGCCGTCGTTGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACTGCCATCCGCTGCTTCCTCCGCCGTCGCGGCACTTCCGACGATGATTCGAGTGATAGTCGGCAGGAGGAACTTCCAGAGGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCACTGGTGTTCTCGGCGGAAATGAAGCCGAAACTCGCCGGTGCGGAAGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTCACATTCTTCTTGTCCAACTTGCCGCCGTAGTTACCTCCCTCCCTCGCCGTCGTCCTCTGCTAGCGGCGGCGACGGAAACCCCTGAGATTAGATTAGAAATACCGGAATTTCTTCGGACAGCCGCCGTTGTAGCTGTTTGATAGCAATTCGAATTGAGCATTTGCTTTTTTACTTTTATTTTTTAAAATTACAATTTACATCTTCTTCTTCCTCTTTCCCTTTTCCTC

mRNA sequence

ATGCGGCCAACTCCTTTAGACGCCGATGACACCGTCCGCTTCCAACCACCGCCATCGCCTCCCTGCCACGACCTCCGCGCCTGTACTTGGCGTCCGTACTCCAGTTCCAGAGATTTCGAAGCCAACGCCGCCGTCGTTGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACTGCCATCCGCTGCTTCCTCCGCCGTCGCGGCACTTCCGACGATGATTCGAGTGATAGTCGGCAGGAGGAACTTCCAGAGGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCACTGGTGTTCTCGGCGGAAATGAAGCCGAAACTCGCCGGTGCGGAAGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTCACATTCTTCTTGTCCAACTTGCCGCCGTAGTTACCTCCCTCCCTCGCCGTCGTCCTCTGCTAGCGGCGGCGACGGAAACCCCTGA

Coding sequence (CDS)

ATGCGGCCAACTCCTTTAGACGCCGATGACACCGTCCGCTTCCAACCACCGCCATCGCCTCCCTGCCACGACCTCCGCGCCTGTACTTGGCGTCCGTACTCCAGTTCCAGAGATTTCGAAGCCAACGCCGCCGTCGTTGTCATCATCCTCCTCTGTGGCCTCATCTGCGCTCTCGCTCTCAACACTGCCATCCGCTGCTTCCTCCGCCGTCGCGGCACTTCCGACGATGATTCGAGTGATAGTCGGCAGGAGGAACTTCCAGAGGAGACGAAGCCGACGCTAGTGGACAAATTGAAGATGGCTCCGGCACTGGTGTTCTCGGCGGAAATGAAGCCGAAACTCGCCGGTGCGGAAGCAGAGTGTACGATTTGCTTGACAGAGTTCTCGGAAGGGGAAGAGATTCGAGTATTGGCGATTTGTAAGCACGGATTTCATGTTCAGTGTATTCAAACGTGGTTGATTTCACATTCTTCTTGTCCAACTTGCCGCCGTAGTTACCTCCCTCCCTCGCCGTCGTCCTCTGCTAGCGGCGGCGACGGAAACCCCTGA
Homology
[Close]
BLAST of CSPI05G04000 vs. Swiss-Prot
Match: ATL79_ARATH (RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.6e-32
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 1 

Query: 19  SPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDS 78
           +P C+    C W+PYS+S DF ANA+V++I+++  LICAL+L  AIRCFLR    ++DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDH 76

Query: 79  SDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+++  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  KPD--PEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLISHSSCPTCRRS 166
            C+HGFHV+CI  WL + SSCPTCR S
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTS 151

[Close]
BLAST of CSPI05G04000 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-23
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 1 

Query: 39  FEANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDDSSDSRQEE--LPEETKPTL 98
           F+ N  +++  LLC LICAL+LN+A+RC LR  RR TSDD  S++      L      T 
Sbjct: 29  FDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATG 88

Query: 99  VDK--LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 158
           + K  LK  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFHV+CI TW
Sbjct: 89  LKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTW 148

Query: 159 LISHSSCPTCRRSYLPPSPSSSA 176
           L+S SSCPTCR+S L   PS  A
Sbjct: 149 LLSRSSCPTCRQSLLLEQPSPMA 168

[Close]
BLAST of CSPI05G04000 vs. Swiss-Prot
Match: ATL73_ARATH (RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-23
Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = 1 

Query: 40  EANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDDSSDSRQEELPEETKPTLVDK 99
           + +  +++  LLC LICAL +N+ +RC LR  RR T ++D  D+         K  L   
Sbjct: 38  DTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRAL--- 97

Query: 100 LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHS 159
            K+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TWL+SHS
Sbjct: 98  -KVIPVDSYSPELKMKAT----ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHS 157

Query: 160 SCPTCRRSYLP-PSPSSSASGGD 180
           SCPTCR+S L   +P++ +  GD
Sbjct: 158 SCPTCRQSLLEHQTPANGSRRGD 172

[Close]
BLAST of CSPI05G04000 vs. Swiss-Prot
Match: ATL78_ARATH (RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 3.6e-22
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 1 

Query: 32  PYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDSSDSRQEELPEETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR    S+   S++  +  P    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDK--LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCI 151
            T V +  LK    + +S E+   L G + EC ICL+EF   E +++L  C HGFHV+CI
Sbjct: 105 NTGVKRKALKSFQTVSYSTELN--LPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 164

Query: 152 QTWLISHSSCPTCR 164
             WL SHSSCPTCR
Sbjct: 165 DKWLSSHSSCPTCR 173

[Close]
BLAST of CSPI05G04000 vs. Swiss-Prot
Match: ATL44_ARATH (Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 62/157 (39.49%), Postives = 78/157 (49.68%), Query Frame = 1 

Query: 16  PPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSD 75
           PPP P    + A            E++  V++  LLC LIC   L   +RC   RR T+ 
Sbjct: 13  PPPQPSEEMIAA------------ESDMVVILSALLCALICVAGLAAVVRCAWLRRFTAG 72

Query: 76  DDSSDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAE----AECTICLTEFSEG 135
            DS        P   K      L+  P   F+A      A AE     EC ICLT+F++G
Sbjct: 73  GDS--------PSPNKGLKKKALQSLPRSTFTAAESTSGAAAEEGDSTECAICLTDFADG 132

Query: 136 EEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLP 169
           EEIRVL +C H FHV+CI  WL+S SSCP+CRR   P
Sbjct: 133 EEIRVLPLCGHSFHVECIDKWLVSRSSCPSCRRILTP 149

[Close]
BLAST of CSPI05G04000 vs. TrEMBL
Match: A0A0A0KNJ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146260 PE=4 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 5.7e-99
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 1 

Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTL+DKLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]
BLAST of CSPI05G04000 vs. TrEMBL
Match: A0A059CJF0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02538 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-40
Identity = 99/188 (52.66%), Postives = 116/188 (61.70%), Query Frame = 1 

Query: 3   PTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNT 62
           P P      V  QP P+  C DL +C W PYS+S DFEANAA+++I+LLCGLICALALNT
Sbjct: 13  PAPRTPRHLVPPQPLPATTC-DLPSCRWHPYSASGDFEANAAMILIVLLCGLICALALNT 72

Query: 63  AIRCFL------------RRRGTSDDDSSDSRQEELPEETKPTLVDKLKMAPALVFSAEM 122
           AIRCFL            RRR     +  +  +EE  ++ +P L D   MA   V  A  
Sbjct: 73  AIRCFLGGHGRGRPAAAHRRRPQQGQEEEEEEEEE--QQPEPKLGDSDLMAAPAVTYAPG 132

Query: 123 KPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPS 179
             KLAG EAEC ICLTEF EG+ IRVLA C HGFHV+CI+ WL SH SCPTCR S +   
Sbjct: 133 VTKLAGTEAECAICLTEFDEGDGIRVLATCSHGFHVECIERWLRSHKSCPTCRSSLVVDR 192

[Close]
BLAST of CSPI05G04000 vs. TrEMBL
Match: M5WVF0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011056mg PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.8e-40
Identity = 99/172 (57.56%), Postives = 115/172 (66.86%), Query Frame = 1 

Query: 16  PPPSPPCHDL-RACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTS 75
           PPP+     +   C W PYS S++FEANAA+V+IILL  LICAL LN AIRCFLR  G+ 
Sbjct: 34  PPPTRQTTCVSHTCRWWPYSGSKEFEANAAMVIIILLSALICALGLNAAIRCFLRGGGSD 93

Query: 76  D-------DDSS---DSRQEELPEETKPTL--VDKLKMAPALVFSAEMKPKLAGAEAECT 135
           D       DDSS    ++QE +  + K  +  V  L+ AP L +SAEMK  LAGAEAEC 
Sbjct: 94  DNNSPRDNDDSSHLPQTQQELVQAQQKSNVAGVSCLEGAPELFYSAEMKATLAGAEAECA 153

Query: 136 ICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 175
           ICL+EF EGE IRVL  CKHGFH  CIQ WL SHSSCPTCRR+ LP SP  S
Sbjct: 154 ICLSEFVEGEGIRVLGRCKHGFHTHCIQEWLSSHSSCPTCRRTCLPQSPPPS 205

[Close]
BLAST of CSPI05G04000 vs. TrEMBL
Match: A0A061G1R4_THECC (RING-H2 finger protein ATL79, putative OS=Theobroma cacao GN=TCM_015567 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.1e-38
Identity = 103/191 (53.93%), Postives = 119/191 (62.30%), Query Frame = 1 

Query: 1   MRPTPLD-ADDTVRFQPPPSPPCHDLRA----------CTWRPYSSSRDFEANAAVVVII 60
           MRP P + A   +   PP S     L +          C WRPYSSS DFEANAA+V+II
Sbjct: 1   MRPPPAETAQHLIHMSPPLSSGEPQLSSTSTSTCNPHTCGWRPYSSSNDFEANAAMVLII 60

Query: 61  LLCGLICALALNTAIRCFLRRRGTSD----DDSSDSRQEELPEETKPT---LVDKLKMAP 120
           L C LIC+LALN AIRCFLR  G        ++    Q+EL E+ KP        +  AP
Sbjct: 61  LFCALICSLALNAAIRCFLRGGGGRPRQFRHNNIPQTQQEL-EQRKPVPEVAAASMVAAP 120

Query: 121 ALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTC 174
            LV++  +  KLAGAEAEC ICL+EF EGE I+VLA CKHGFHVQCIQ WL SH SCPTC
Sbjct: 121 TLVYTTGL--KLAGAEAECAICLSEFVEGEGIQVLAKCKHGFHVQCIQQWLSSHFSCPTC 180

[Close]
BLAST of CSPI05G04000 vs. TrEMBL
Match: B9GJJ3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45800g PE=4 SV=2)

HSP 1 Score: 165.2 bits (417), Expect = 7.3e-38
Identity = 98/185 (52.97%), Postives = 119/185 (64.32%), Query Frame = 1 

Query: 1   MRPTPLDADDTV----RFQPPP----SPPCH-DLRACTWRPYSSSRDFEANAAVVVIILL 60
           MRP PL+A+          PPP    +P C   + +C W PYS+S DF AN A+++IILL
Sbjct: 1   MRPAPLEAEAAAANISHLSPPPLHSRAPSCDPQVHSCKWWPYSNSNDFGANTAMILIILL 60

Query: 61  CGLICALALNTAIRCFLRRRGTSDDDSSDSRQEELPEETKP---TLVDKLKMAPALVFSA 120
           C LICAL LNTAIR FLR    S++++S  R  EL E+ KP     +  L +A   V+SA
Sbjct: 61  CALICALVLNTAIRWFLR----SNNNNSSDRLGELEEQRKPKDEADMATLVLATTQVYSA 120

Query: 121 EMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLP 174
            MK  L G EA+C ICL+EF EGE IRVL  C HGFHV CI+ WL SHSSCPTCRRS L 
Sbjct: 121 GMK--LGGVEADCAICLSEFVEGEGIRVLGRCDHGFHVLCIEKWLSSHSSCPTCRRSCLA 179

[Close]
BLAST of CSPI05G04000 vs. TAIR10
Match: AT5G47610.1 (AT5G47610.1 RING/U-box superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-33
Identity = 73/147 (49.66%), Postives = 98/147 (66.67%), Query Frame = 1 

Query: 19  SPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDS 78
           +P C+    C W+PYS+S DF ANA+V++I+++  LICAL+L  AIRCFLR    ++DD 
Sbjct: 17  TPTCNS-HTCRWKPYSNSTDFTANASVLLILVISALICALSLYAAIRCFLRPTLETEDDH 76

Query: 79  SDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLA 138
                 E    + PT        P LV+S+++  +LAGAEAEC ICL+EF +GE I+VL 
Sbjct: 77  KPD--PEAAASSTPT-------TPTLVYSSDL--ELAGAEAECAICLSEFEQGESIQVLE 136

Query: 139 ICKHGFHVQCIQTWLISHSSCPTCRRS 166
            C+HGFHV+CI  WL + SSCPTCR S
Sbjct: 137 KCQHGFHVKCIHKWLSTRSSCPTCRTS 151

[Close]
BLAST of CSPI05G04000 vs. TAIR10
Match: AT4G17245.1 (AT4G17245.1 RING/U-box superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 1.6e-28
Identity = 72/161 (44.72%), Postives = 91/161 (56.52%), Query Frame = 1 

Query: 15  QPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLR---RR 74
           QP  +  C    +C W+PYS S DF ANA +++IIL C  IC L+L+ AIRC LR   + 
Sbjct: 10  QPELTSTCTS-HSCGWKPYSHSNDFAANAFLLLIILFCSFICVLSLHAAIRCCLRPVLQH 69

Query: 75  GTSDDDSSDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAEAECTICLTEFSEG 134
               D   ++   + P              P LV+S  +   LAG EAEC ICL+EF +G
Sbjct: 70  VPKPDPDLEATHPDAP--------------PTLVYSPGLN--LAGNEAECIICLSEFQDG 129

Query: 135 EEIRVLAICKHGFHVQCIQTWL-ISHSSCPTCRRSYLPPSP 172
           + +RVL  CKHGFHV CIQ WL  SHSSCPTCR +     P
Sbjct: 130 DTLRVLERCKHGFHVYCIQKWLSSSHSSCPTCRTNIFSSPP 153

[Close]
BLAST of CSPI05G04000 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 110.9 bits (276), Expect = 8.3e-25
Identity = 66/143 (46.15%), Postives = 87/143 (60.84%), Query Frame = 1 

Query: 39  FEANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDDSSDSRQEE--LPEETKPTL 98
           F+ N  +++  LLC LICAL+LN+A+RC LR  RR TSDD  S++      L      T 
Sbjct: 29  FDTNMVIILAALLCALICALSLNSALRCVLRITRRFTSDDQVSNASNANANLGRLAAATG 88

Query: 99  VDK--LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTW 158
           + K  LK  P  ++ + +    A    EC ICL +F +GE++RVL  C HGFHV+CI TW
Sbjct: 89  LKKQALKQIPVGLYGSGIIDMKA---TECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTW 148

Query: 159 LISHSSCPTCRRSYLPPSPSSSA 176
           L+S SSCPTCR+S L   PS  A
Sbjct: 149 LLSRSSCPTCRQSLLLEQPSPMA 168

[Close]
BLAST of CSPI05G04000 vs. TAIR10
Match: AT5G05280.1 (AT5G05280.1 RING/U-box superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-24
Identity = 63/143 (44.06%), Postives = 86/143 (60.14%), Query Frame = 1 

Query: 40  EANAAVVVIILLCGLICALALNTAIRCFLR--RRGTSDDDSSDSRQEELPEETKPTLVDK 99
           + +  +++  LLC LICAL +N+ +RC LR  RR T ++D  D+         K  L   
Sbjct: 38  DTHMVIILAALLCALICALGINSVLRCVLRCTRRFTPNEDPVDTNANVAKGIKKRAL--- 97

Query: 100 LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHS 159
            K+ P   +S E+K K      EC ICL +F EGE +RVL  C HGFHV+CI TWL+SHS
Sbjct: 98  -KVIPVDSYSPELKMKAT----ECLICLGDFVEGETVRVLPKCNHGFHVKCIDTWLLSHS 157

Query: 160 SCPTCRRSYLP-PSPSSSASGGD 180
           SCPTCR+S L   +P++ +  GD
Sbjct: 158 SCPTCRQSLLEHQTPANGSRRGD 172

[Close]
BLAST of CSPI05G04000 vs. TAIR10
Match: AT1G49230.1 (AT1G49230.1 RING/U-box superfamily protein)

HSP 1 Score: 106.3 bits (264), Expect = 2.0e-23
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 1 

Query: 32  PYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSDDDSSDSRQEELPEETK 91
           PY    +F+AN  +V+ +LLC L+C+L LN+ IRC LR    S+   S++  +  P    
Sbjct: 45  PYVGDNNFDANVVMVLSVLLCALVCSLGLNSIIRCALR---CSNLVPSEAGGDNYPVRLT 104

Query: 92  PTLVDK--LKMAPALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCI 151
            T V +  LK    + +S E+   L G + EC ICL+EF   E +++L  C HGFHV+CI
Sbjct: 105 NTGVKRKALKSFQTVSYSTELN--LPGLDTECAICLSEFVAEERVKLLPTCHHGFHVRCI 164

Query: 152 QTWLISHSSCPTCR 164
             WL SHSSCPTCR
Sbjct: 165 DKWLSSHSSCPTCR 173

[Close]
BLAST of CSPI05G04000 vs. NCBI nr
Match: gi|449456456|ref|XP_004145965.1| (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis sativus])

HSP 1 Score: 368.2 bits (944), Expect = 8.1e-99
Identity = 180/182 (98.90%), Postives = 182/182 (100.00%), Query Frame = 1 

Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTL+DKLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLMDKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180
           CTICLTEFSEGEEIRVL+ICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLSICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]
BLAST of CSPI05G04000 vs. NCBI nr
Match: gi|659074211|ref|XP_008437481.1| (PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo])

HSP 1 Score: 360.5 bits (924), Expect = 1.7e-96
Identity = 176/182 (96.70%), Postives = 180/182 (98.90%), Query Frame = 1 

Query: 1   MRPTPLDADDTVRFQPPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALAL 60
           MRPTPLDAD+TVRFQPPPSPPCHDLRACTWRPYS+SRDFEANAAVVVIILLCGLICALAL
Sbjct: 1   MRPTPLDADETVRFQPPPSPPCHDLRACTWRPYSNSRDFEANAAVVVIILLCGLICALAL 60

Query: 61  NTAIRCFLRRRGTSDDDSSDSRQEELPEETKPTLVDKLKMAPALVFSAEMKPKLAGAEAE 120
           NTAIRCFLRRRGTSDDDS+DSRQEEL EETKPTLV+KLKMAPALVFSAEMKPKLAGAEAE
Sbjct: 61  NTAIRCFLRRRGTSDDDSNDSRQEELQEETKPTLVEKLKMAPALVFSAEMKPKLAGAEAE 120

Query: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSASGGDG 180
           CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS SGGDG
Sbjct: 121 CTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSSVSGGDG 180

Query: 181 NP 183
           NP
Sbjct: 181 NP 182

[Close]
BLAST of CSPI05G04000 vs. NCBI nr
Match: gi|694360849|ref|XP_009360247.1| (PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri])

HSP 1 Score: 189.9 bits (481), Expect = 4.0e-45
Identity = 98/166 (59.04%), Postives = 118/166 (71.08%), Query Frame = 1 

Query: 16  PPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSD 75
           PP  P   D  AC W PYS S++FEANAA+++I+LLC LICAL LN AIRCFLR   T+ 
Sbjct: 29  PPAGPTTCDSHACRWWPYSGSKEFEANAAMIIIVLLCALICALGLNAAIRCFLRGGSTNP 88

Query: 76  DD----SSDSRQEELPEETKPTLVDK---LKMAPALVFSAEMKPKLAGAEAECTICLTEF 135
            D    S+  RQ+EL +  + + V     L+ APA++++AEMK KLAG EAEC ICL+EF
Sbjct: 89  SDRQNNSAPQRQQELVDVQQKSNVAAAKCLEAAPAVIYTAEMKAKLAGVEAECAICLSEF 148

Query: 136 SEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 175
            EGE IRV+  CKHGFH QCIQ WL SHSSCPTCRR+ LP SPS S
Sbjct: 149 EEGEGIRVIGRCKHGFHAQCIQEWLSSHSSCPTCRRTCLPQSPSQS 194

[Close]
BLAST of CSPI05G04000 vs. NCBI nr
Match: gi|658023180|ref|XP_008346994.1| (PREDICTED: RING-H2 finger protein ATL79-like [Malus domestica])

HSP 1 Score: 183.0 bits (463), Expect = 4.8e-43
Identity = 95/166 (57.23%), Postives = 116/166 (69.88%), Query Frame = 1 

Query: 16  PPPSPPCHDLRACTWRPYSSSRDFEANAAVVVIILLCGLICALALNTAIRCFLRRRGTSD 75
           PP  P      AC W PYS S++FEANAA+++I+LLC LICAL LN AIRCF+R   T+ 
Sbjct: 29  PPAGPTTCGSHACRWWPYSGSKEFEANAAMIIIVLLCALICALGLNAAIRCFVRGGSTNP 88

Query: 76  DD----SSDSRQEELPEETKPTLVDK---LKMAPALVFSAEMKPKLAGAEAECTICLTEF 135
            D    S+  RQ+ L +  + + V     L+ APA++++AEMK KLAG EAEC ICL+EF
Sbjct: 89  SDRQNNSAPQRQQALVDVQQKSNVAAAKCLEAAPAVIYTAEMKAKLAGVEAECAICLSEF 148

Query: 136 SEGEEIRVLAICKHGFHVQCIQTWLISHSSCPTCRRSYLPPSPSSS 175
            EGE IRV+  CKHGFH QCIQ WL SHSSCPTCRR+ LP SPS S
Sbjct: 149 VEGEGIRVIGRCKHGFHAQCIQEWLSSHSSCPTCRRTCLPQSPSQS 194

[Close]
BLAST of CSPI05G04000 vs. NCBI nr
Match: gi|694396836|ref|XP_009373686.1| (PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri])

HSP 1 Score: 175.3 bits (443), Expect = 1.0e-40
Identity = 108/206 (52.43%), Postives = 128/206 (62.14%), Query Frame = 1 

Query: 1   MRPTP---LDADDTVRF-----QPP-PSPPCHDL----RACTWRPYSSSRDFEANAAVVV 60
           MRP P   L A + V F      PP PSPP          C W PYS S++FEANAA+++
Sbjct: 1   MRPQPTVRLSAGEVVEFGLIHFSPPLPSPPTGPTTCVSHTCRWWPYSGSKEFEANAAMII 60

Query: 61  IILLCGLICALALNTAIRCFLRR-RGTSDDDSSDS----RQEELPEETKPTLVDK--LKM 120
           I+LL  LI AL LN AIRCFLR  RG   D  ++S    RQE +  + K  +     L+ 
Sbjct: 61  IVLLSALISALGLNAAIRCFLRGGRGNPSDRENNSVPQSRQELVDVQHKSNVATASCLEA 120

Query: 121 APALVFSAEMKPKLAGAEAECTICLTEFSEGEEIRVLAICKHGFHVQCIQTWLISHSSCP 180
           AP ++++AEMK KLAG EAEC ICL+EF EGE IRVL  CKHGFH QCIQ WL SHSSCP
Sbjct: 121 APTVIYTAEMKAKLAGVEAECAICLSEFVEGEGIRVLRRCKHGFHAQCIQKWLSSHSSCP 180

Query: 181 TCRRSYLPPSPSSSAS----GGDGNP 183
           TCRR+ LP SPS S +      D NP
Sbjct: 181 TCRRTCLPQSPSQSPAPPQPSADHNP 206

The following BLAST results are available for this feature:
BLAST of CSPI05G04000 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL79_ARATH6.6e-3249.66RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2 SV=1[more]
ATL72_ARATH1.5e-2346.15RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
ATL73_ARATH4.3e-2344.06RING-H2 finger protein ATL73 OS=Arabidopsis thaliana GN=ATL73 PE=2 SV=1[more]
ATL78_ARATH3.6e-2243.28RING-H2 finger protein ATL78 OS=Arabidopsis thaliana GN=ATL78 PE=2 SV=1[more]
ATL44_ARATH1.5e-2039.49Probable E3 ubiquitin-protein ligase ATL44 OS=Arabidopsis thaliana GN=ATL44 PE=2... [more]
BLAST of CSPI05G04000 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KNJ7_CUCSA5.7e-9998.90Uncharacterized protein OS=Cucumis sativus GN=Csa_5G146260 PE=4 SV=1[more]
A0A059CJF0_EUCGR2.7e-4052.66Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D02538 PE=4 SV=1[more]
M5WVF0_PRUPE7.8e-4057.56Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011056mg PE=4 SV=1[more]
A0A061G1R4_THECC1.1e-3853.93RING-H2 finger protein ATL79, putative OS=Theobroma cacao GN=TCM_015567 PE=4 SV=... [more]
B9GJJ3_POPTR7.3e-3852.97Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s45800g PE=4 SV=2[more]
BLAST of CSPI05G04000 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47610.13.7e-3349.66 RING/U-box superfamily protein[more]
AT4G17245.11.6e-2844.72 RING/U-box superfamily protein[more]
AT3G10910.18.3e-2546.15 RING/U-box superfamily protein[more]
AT5G05280.12.4e-2444.06 RING/U-box superfamily protein[more]
AT1G49230.12.0e-2343.28 RING/U-box superfamily protein[more]
BLAST of CSPI05G04000 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449456456|ref|XP_004145965.1|8.1e-9998.90PREDICTED: RING-H2 finger protein ATL79-like [Cucumis sativus][more]
gi|659074211|ref|XP_008437481.1|1.7e-9696.70PREDICTED: RING-H2 finger protein ATL79-like [Cucumis melo][more]
gi|694360849|ref|XP_009360247.1|4.0e-4559.04PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri][more]
gi|658023180|ref|XP_008346994.1|4.8e-4357.23PREDICTED: RING-H2 finger protein ATL79-like [Malus domestica][more]
gi|694396836|ref|XP_009373686.1|1.0e-4052.43PREDICTED: RING-H2 finger protein ATL79-like [Pyrus x bretschneideri][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI05G04000.1CSPI05G04000.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 120..163
score: 2.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 121..162
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 121..163
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 118..165
score: 5.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 31..165
score: 2.6
NoneNo IPR availablePANTHERPTHR14155:SF74RING-H2 FINGER PROTEIN ATL45-RELATEDcoord: 31..165
score: 2.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 120..169
score: 1.21

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI05G04000Cla004970Watermelon (97103) v1cpiwmB416
CSPI05G04000Csa5G146260Cucumber (Chinese Long) v2cpicuB240
CSPI05G04000MELO3C005811Melon (DHL92) v3.5.1cpimeB348
CSPI05G04000ClCG01G001240Watermelon (Charleston Gray)cpiwcgB379
CSPI05G04000Lsi09G001080Bottle gourd (USVL1VR-Ls)cpilsiB322
CSPI05G04000MELO3C005811.2Melon (DHL92) v3.6.1cpimedB338
CSPI05G04000CsaV3_5G001360Cucumber (Chinese Long) v3cpicucB285
CSPI05G04000Cla97C01G001270Watermelon (97103) v2cpiwmbB349
CSPI05G04000Bhi12G000037Wax gourdcpiwgoB439
CSPI05G04000Cucsa.193250Cucumber (Gy14) v1cgycpiB304
CSPI05G04000CmaCh02G009650Cucurbita maxima (Rimu)cmacpiB617
CSPI05G04000CmoCh15G014060Cucurbita moschata (Rifu)cmocpiB295
CSPI05G04000CmoCh02G009710Cucurbita moschata (Rifu)cmocpiB610
CSPI05G04000Cp4.1LG05g07580Cucurbita pepo (Zucchini)cpecpiB732
CSPI05G04000Cp4.1LG00g00950Cucurbita pepo (Zucchini)cpecpiB014
CSPI05G04000CsGy5G001240Cucumber (Gy14) v2cgybcpiB226
CSPI05G04000Carg20798Silver-seed gourdcarcpiB1072
CSPI05G04000Carg08512Silver-seed gourdcarcpiB0747
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI05G04000Wild cucumber (PI 183967)cpicpiB158
CSPI05G04000Cucumber (Gy14) v1cgycpiB132
CSPI05G04000Cucurbita maxima (Rimu)cmacpiB303
CSPI05G04000Cucumber (Chinese Long) v2cpicuB238
CSPI05G04000Watermelon (Charleston Gray)cpiwcgB423
CSPI05G04000Melon (DHL92) v3.6.1cpimedB403
CSPI05G04000Cucumber (Gy14) v2cgybcpiB186
CSPI05G04000Cucumber (Chinese Long) v3cpicucB282
CSPI05G04000Watermelon (97103) v2cpiwmbB415
CSPI05G04000Wax gourdcpiwgoB483