Lsi09G000400 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi09G000400
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	R3 MYB transcription factor
Location	chr09 : 362888 .. 364358 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAGATGTGTCATATCTGAATATGTGTGTGTGTGTGTGCAGTGCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCAATAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGACTCTGCACTGCCTAAAACAATCAGAGTGGAGAAAGAAGGTGACATATCAGAGAGTTTTAGGCACCCATTTCAAGTTTAGTTGGTGCTCTCTCACAGCTGTATTAAACTATTACCCATGTTTATCTGTCTGCTTATCTGTTTTTAGTTGGTGGGTGCTGAGCTTATATCCACACTTTTGATTATGGCAAAAAACTAGGATTTTTTTTCTTTTTCTTTTTTGACATCTCTTAGTCCTAAAGGAATGAAACTACTACATGACCTTCCCCCTAGAACAGCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTATCTCTAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCCAAAGTTTGGTGGGAAGAAGAAAATACAGGCATGCACATAAACTTAAATTTCCCCGTGGATGTTTCAAACCTCTCTATCCCAGTTTTTCCTAAAATTCTTTCATCCCCAATTCTTTAGCTTCCTGTTTTTGTGCCGTCTCTAATCTTTGAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGGTTTCTTTCATTCTTGATTAACTCGATTTTTCTACTTTCCATGTCTAATTACCCATCTTGAAGTTGGTCTCTTCTTCATAATTTTGATGATATTTTAAATCCTACTTCCATTTTGTGAATTTGTGGCTTATTATCTAACAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTAAGTTGTGTTCAAACTACAAAGCAACCCAGATTTATAGGATTCTCCCACCTATCTCAACAAGAATGGAGATAGATTCTGTTCTCTCTCCATCATTGCTTTCCATTTCCAATTACCTCAAGCATCTAAGTTTCTAAGAAAATGGCTTTTCATTTCAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGATAGATACAGGCAGTGAGGATTCAGTCAATTAAGTCTTCAAAGACTTTCTGATGGGTTCTCTACTTCCTCTTTTGTGGTTTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTGCAAGTACCCTATCTAAGAACACATGGTATGGAACTGAGCTATTTTTTTCAATCAAATAACACAGTAAAATTTATGATTCCAAATC

mRNA sequence

ATAAGATGTGTCATATCTGAATATGTGTGTGTGTGTGTGCAGTGCAGTTGGGGAGAAGGTTAGCTGAACTGAACACAGGCAATAGACCATTTCCCCAGGTTCCCAACTACCAGTTGAATATAATATTTTGGGTGAGATTACAAGACTCTGCACTGCCTAAAACAATCAGAGTGGAGAAAGAAGGTGACATATCAGAGAGTTTTAGGCACCCATTTCAAGTTTAGTTGGTGCTCTCTCACAGCTGTATTAAACTATTACCCATGTTTATCTGTCTGCTTATCTGTTTTTAGTTGGTGGGTGCTGAGCTTATATCCACACTTTTGATTATGGCAAAAAACTAGGATTTTTTTTCTTTTTCTTTTTTGACATCTCTTAGTCCTAAAGGAATGAAACTACTACATGACCTTCCCCCTAGAACAGCTCTCTCTCTCTCTCTTTCTCTTTCTCTCTCTCTATCTCTAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCCAAAGTTTGGTGGGAAGAAGAAAATACAGGCATGCACATAAACTTAAATTTCCCCGTGGATGTTTCAAACCTCTCTATCCCAGTTTTTCCTAAAATTCTTTCATCCCCAATTCTTTAGCTTCCTGTTTTTGTGCCGTCTCTAATCTTTGAGGAAACATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGATAGATACAGGCAGTGAGGATTCAGTCAATTAAGTCTTCAAAGACTTTCTGATGGGTTCTCTACTTCCTCTTTTGTGGTTTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTGCAAGTACCCTATCTAAGAACACATGGTATGGAACTGAGCTATTTTTTTCAATCAAATAACACAGTAAAATTTATGATTCCAAATC

Coding sequence (CDS)

ATGGACAATCATCGTCACCAGAAACAAGCCAAAATCACTCCACTAGAATCTGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCATAAGCTGATTGGAGATAGGTGGGATCTAATAGCAGGCAGAATTCCGGGGCGGAAACCAGAAGAGATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA

Protein sequence

MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTHLEGFGKRRRG

Homology

[Close]

BLAST of Lsi09G000400 vs. Swiss-Prot
Match: TRY_ARATH (Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-26
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ KI   +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of Lsi09G000400 vs. Swiss-Prot
Match: CPC_ARATH (Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-21
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of Lsi09G000400 vs. Swiss-Prot
Match: TCL2_ARATH (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana GN=TCL2 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.6e-20
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +KQ+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of Lsi09G000400 vs. Swiss-Prot
Match: ETC3_ARATH (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 7.5e-20
Identity = 45/73 (61.64%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1  MDNHRHQKQAK---ITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  KQ K   I    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

[Close]

BLAST of Lsi09G000400 vs. Swiss-Prot
Match: ETC2_ARATH (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana GN=ETC2 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 9.8e-20
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 8  KQAKITP--LESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIE 67
          +Q K T    +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIE
Sbjct: 16 RQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIE 75

Query: 68 RYWIMTHLEGFGKRRR 82
          RYWIM + + F  +RR
Sbjct: 76 RYWIMRNSDYFSHKRR 91

[Close]

BLAST of Lsi09G000400 vs. TrEMBL
Match: I6NF75_CUCSA (R3 MYB transcription factor OS=Cucumis sativus GN=TRY PE=2 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 3.5e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKI+PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. TrEMBL
Match: U3PEL0_9BRAS (BVTRY-1 OS=Brassica villosa GN=BVTRY-1 PE=2 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 5.4e-25
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ K+T  +SEEVSS  W+FI MT QEEDLI RMH+L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKVTLHDSEEVSSIEWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + +GF ++RR
Sbjct: 65 EEIERYWIMRNSDGFAEKRR 84

[Close]

BLAST of Lsi09G000400 vs. TrEMBL
Match: A0A061G2M4_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_015351 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 7.1e-25
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 1


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MD  R +KQ KIT  E EEVSS  W+FI +T QEEDLI+RMH+L+G+RWDLIAGRIPGRK
Sbjct: 1  MDRQRRRKQPKITTREYEEVSSIEWEFIKVTEQEEDLIYRMHRLVGERWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRR 82
           EEIER+WIM + EGF +RRR
Sbjct: 61 AEEIERFWIMQNNEGFAQRRR 81

[Close]

BLAST of Lsi09G000400 vs. TrEMBL
Match: A0A078G3V4_BRANA (BnaC09g29430D protein OS=Brassica napus GN=BnaC09g29430D PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-24
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ K T  +SEEVSS  W+FI MT QEEDLI RMH+L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKATLHDSEEVSSIEWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + +GF ++RR
Sbjct: 65 EEIERYWIMRNSDGFAEKRR 84

[Close]

BLAST of Lsi09G000400 vs. TrEMBL
Match: A0A087GAN5_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G313200 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.1e-24
Identity = 54/80 (67.50%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ K T  +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKFTHHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGREP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF ++RR
Sbjct: 65 EEIERYWIMRNSEGFAEKRR 84

[Close]

BLAST of Lsi09G000400 vs. TAIR10
Match: AT5G53200.1 (AT5G53200.1 Homeodomain-like superfamily protein)

HSP 1 Score: 117.9 bits (294), Expect = 3.0e-27
Identity = 54/80 (67.50%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ KI   +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of Lsi09G000400 vs. TAIR10
Match: AT2G46410.1 (AT2G46410.1 Homeodomain-like superfamily protein)

HSP 1 Score: 101.3 bits (251), Expect = 2.9e-22
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R ++Q+K     SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 13 RRRRQSKAKASCSEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 72

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 73 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of Lsi09G000400 vs. TAIR10
Match: AT2G30424.1 (AT2G30424.1 Homeodomain-like superfamily protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.5e-21
Identity = 44/77 (57.14%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 5  RHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +KQ+K T  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of Lsi09G000400 vs. TAIR10
Match: AT2G30420.1 (AT2G30420.1 Homeodomain-like superfamily protein)

HSP 1 Score: 97.1 bits (240), Expect = 5.5e-21
Identity = 46/76 (60.53%), Postives = 58/76 (76.32%), Query Frame = 1


Query: 8  KQAKITP--LESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIE 67
          +Q K T    +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIE
Sbjct: 16 RQTKFTRSRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIE 75

Query: 68 RYWIMTHLEGFGKRRR 82
          RYWIM + + F  +RR
Sbjct: 76 RYWIMRNSDYFSHKRR 91

[Close]

BLAST of Lsi09G000400 vs. TAIR10
Match: AT4G01060.1 (AT4G01060.1 CAPRICE-like MYB3)

HSP 1 Score: 94.4 bits (233), Expect = 3.6e-20
Identity = 43/75 (57.33%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 1  MDNHRHQKQAKITPL-----ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGR 60
          MDNHR  KQ K   +     E  EVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGR
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEGTEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGR 60

Query: 61 IPGRKPEEIERYWIM 71
          IPGR   EIER+W+M
Sbjct: 61 IPGRTAGEIERFWVM 75

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: gi|659074382|ref|XP_008437574.1| (PREDICTED: transcription factor TRY [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 2.2e-40
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKQAKI+PL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: gi|449456371|ref|XP_004145923.1| (PREDICTED: transcription factor TRY [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 5.0e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1  MDNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKI+PLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: gi|545689300|gb|AGW45473.1| (BVTRY-1 [Brassica villosa])

HSP 1 Score: 121.3 bits (303), Expect = 7.8e-25
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ K+T  +SEEVSS  W+FI MT QEEDLI RMH+L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKVTLHDSEEVSSIEWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + +GF ++RR
Sbjct: 65 EEIERYWIMRNSDGFAEKRR 84

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: gi|685372601|ref|XP_009119863.1| (PREDICTED: transcription factor TRY [Brassica rapa])

HSP 1 Score: 121.3 bits (303), Expect = 7.8e-25
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ K+T  +SEEVSS  W+FI MT QEEDLI RMH+L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKVTLHDSEEVSSIEWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + +GF ++RR
Sbjct: 65 EEIERYWIMRNSDGFAEKRR 84

[Close]

BLAST of Lsi09G000400 vs. NCBI nr
Match: gi|727537878|ref|XP_010442878.1| (PREDICTED: transcription factor TRY-like [Camelina sativa])

HSP 1 Score: 120.9 bits (302), Expect = 1.0e-24
Identity = 56/80 (70.00%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 2  DNHRHQKQAKITPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +KQ KI   +SEEVSS  W+FI MTAQEEDLI RM++L+GDRWDLIAGRIPGR+P
Sbjct: 6  DRRRRRKQHKIALHDSEEVSSIEWEFINMTAQEEDLIFRMYRLVGDRWDLIAGRIPGRQP 65

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF ++RR
Sbjct: 66 EEIERYWIMRNSEGFAEKRR 85

The following BLAST results are available for this feature:

BLAST of Lsi09G000400 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRY_ARATH	5.4e-26	67.50	Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1	[more]
CPC_ARATH	5.2e-21	61.04	Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1	[more]
TCL2_ARATH	2.6e-20	57.14	MYB-like transcription factor TCL2 OS=Arabidopsis thaliana GN=TCL2 PE=1 SV=1	[more]
ETC3_ARATH	7.5e-20	61.64	MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1	[more]
ETC2_ARATH	9.8e-20	60.53	MYB-like transcription factor ETC2 OS=Arabidopsis thaliana GN=ETC2 PE=1 SV=1	[more]

BLAST of Lsi09G000400 vs. TrEMBL


Match Name	E-value	Identity	Description
I6NF75_CUCSA	3.5e-40	97.56	R3 MYB transcription factor OS=Cucumis sativus GN=TRY PE=2 SV=1	[more]
U3PEL0_9BRAS	5.4e-25	67.50	BVTRY-1 OS=Brassica villosa GN=BVTRY-1 PE=2 SV=1	[more]
A0A061G2M4_THECC	7.1e-25	69.14	Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_015351 PE=4 SV=1	[more]
A0A078G3V4_BRANA	1.6e-24	67.50	BnaC09g29430D protein OS=Brassica napus GN=BnaC09g29430D PE=4 SV=1	[more]
A0A087GAN5_ARAAL	2.1e-24	67.50	Uncharacterized protein OS=Arabis alpina GN=AALP_AA8G313200 PE=4 SV=1	[more]

BLAST of Lsi09G000400 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53200.1	3.0e-27	67.50	Homeodomain-like superfamily protein	[more]
AT2G46410.1	2.9e-22	61.04	Homeodomain-like superfamily protein	[more]
AT2G30424.1	1.5e-21	57.14	Homeodomain-like superfamily protein	[more]
AT2G30420.1	5.5e-21	60.53	Homeodomain-like superfamily protein	[more]
AT4G01060.1	3.6e-20	57.33	CAPRICE-like MYB3	[more]

BLAST of Lsi09G000400 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659074382\|ref\|XP_008437574.1\|	2.2e-40	97.56	PREDICTED: transcription factor TRY [Cucumis melo]	[more]
gi\|449456371\|ref\|XP_004145923.1\|	5.0e-40	97.56	PREDICTED: transcription factor TRY [Cucumis sativus]	[more]
gi\|545689300\|gb\|AGW45473.1\|	7.8e-25	67.50	BVTRY-1 [Brassica villosa]	[more]
gi\|685372601\|ref\|XP_009119863.1\|	7.8e-25	67.50	PREDICTED: transcription factor TRY [Brassica rapa]	[more]
gi\|727537878\|ref\|XP_010442878.1\|	1.0e-24	70.00	PREDICTED: transcription factor TRY-like [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0001708	cell fate specification
biological_process	GO:0009913	epidermal cell differentiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010091	trichome branching
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi09G000400.1	Lsi09G000400.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 30..69 score: 1.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 26..74 score: 8.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 31..69 score: 3.4
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 31..70 score: 9.3
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 10..77 score: 4.2
None	No IPR available	PANTHER	PTHR10641:SF620	SUBFAMILY NOT NAMED	coord: 10..77 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi09G000400	Csa5G139610	Cucumber (Chinese Long) v2	culsiB322
Lsi09G000400	CSPI05G03360	Wild cucumber (PI 183967)	cpilsiB322
Lsi09G000400	Cucsa.201970	Cucumber (Gy14) v1	cgylsiB347
Lsi09G000400	CmaCh02G011010	Cucurbita maxima (Rimu)	cmalsiB536
Lsi09G000400	CmaCh15G010400	Cucurbita maxima (Rimu)	cmalsiB262
Lsi09G000400	CmoCh02G011270	Cucurbita moschata (Rifu)	cmolsiB520
Lsi09G000400	CmoCh15G011000	Cucurbita moschata (Rifu)	cmolsiB249
Lsi09G000400	Cla004910	Watermelon (97103) v1	lsiwmB027
Lsi09G000400	ClCG01G000590	Watermelon (Charleston Gray)	lsiwcgB008
Lsi09G000400	MELO3C034013.2	Melon (DHL92) v3.6.1	lsimedB012
Lsi09G000400	Cla97C01G000650	Watermelon (97103) v2	lsiwmbB007
Lsi09G000400	Bhi12G000540	Wax gourd	lsiwgoB024
Lsi09G000400	Cp4.1LG05g06140	Cucurbita pepo (Zucchini)	cpelsiB579
Lsi09G000400	Cp4.1LG13g03040	Cucurbita pepo (Zucchini)	cpelsiB134
Lsi09G000400	CsGy5G000600	Cucumber (Gy14) v2	cgyblsiB294
Lsi09G000400	Carg26219	Silver-seed gourd	carlsiB276
Lsi09G000400	Carg14031	Silver-seed gourd	carlsiB457
Lsi09G000400	CsaV3_5G000690	Cucumber (Chinese Long) v3	cuclsiB345

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi09G000400	Bottle gourd (USVL1VR-Ls)	lsilsiB013
Lsi09G000400	Bottle gourd (USVL1VR-Ls)	lsilsiB014
Lsi09G000400	Cucumber (Gy14) v1	cgylsiB413
Lsi09G000400	Cucurbita maxima (Rimu)	cmalsiB226
Lsi09G000400	Cucurbita maxima (Rimu)	cmalsiB298
Lsi09G000400	Cucurbita maxima (Rimu)	cmalsiB363
Lsi09G000400	Cucurbita moschata (Rifu)	cmolsiB214
Lsi09G000400	Cucurbita moschata (Rifu)	cmolsiB286
Lsi09G000400	Cucurbita moschata (Rifu)	cmolsiB351
Lsi09G000400	Cucurbita pepo (Zucchini)	cpelsiB019
Lsi09G000400	Cucurbita pepo (Zucchini)	cpelsiB163
Lsi09G000400	Cucurbita pepo (Zucchini)	cpelsiB486
Lsi09G000400	Wild cucumber (PI 183967)	cpilsiB150
Lsi09G000400	Cucumber (Chinese Long) v2	culsiB151
Lsi09G000400	Melon (DHL92) v3.5.1	lsimeB012
Lsi09G000400	Melon (DHL92) v3.5.1	lsimeB031
Lsi09G000400	Melon (DHL92) v3.5.1	lsimeB035
Lsi09G000400	Watermelon (Charleston Gray)	lsiwcgB018
Lsi09G000400	Watermelon (Charleston Gray)	lsiwcgB021
Lsi09G000400	Watermelon (97103) v1	lsiwmB018
Lsi09G000400	Watermelon (97103) v1	lsiwmB023
Lsi09G000400	Cucumber (Gy14) v2	cgyblsiB137
Lsi09G000400	Melon (DHL92) v3.6.1	lsimedB033
Lsi09G000400	Melon (DHL92) v3.6.1	lsimedB039
Lsi09G000400	Silver-seed gourd	carlsiB487
Lsi09G000400	Silver-seed gourd	carlsiB902
Lsi09G000400	Cucumber (Chinese Long) v3	cuclsiB164
Lsi09G000400	Watermelon (97103) v2	lsiwmbB019
Lsi09G000400	Wax gourd	lsiwgoB045