CSPI05G03360 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI05G03360
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	R3 MYB transcription factor
Location	Chr5 : 3626802 .. 3627844 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCTCTCTCTCTCTCTTTCTCTCTCAAAGATTTCAATATTTTAATCTTGTCTTTTATCCCTGTAAGTTGTCAACTACAAGTCTACCAACCCAACAAGTCAACCAACAAACTTACTTCCTAAAGTTTGGTGGGAAGAAGAAACTACAGGCATGCACATAAACTTAAATTTGCCCCTGGATGTTTCAAATCTGTCTATCACAGTTTTTCCTAAAATTCTTTCATTCCCAGTTCTTTAGCTTCTTGTTTTTGTGCTGCCTCTAATCTTTGAAGAAACATGGACAATCATCGTCACCAGAAACCGGCCAAAATCTCTCCACTAGAATCCGAAGGTCTATTTCATAATTCATTACCTCGATTTTCTACCTTACTCATCCTAGTGTTGGTCTCTTCGTCATGAGTTTCACTTTTTTATGATATTTTAAGTCCTACTTCCATTTTGTGAATTTGTGGCTTGTTATCTAACAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCACAAGCTGATTGGAGATAGGTAAGTTGGGTTCAAAACAACCCAGGTTTACAGAATTCTCCCACTTATCTAAACAATAATGAAGACAGTTTCTGTTATCTCTCCTTTATTGCCTTTCCAATTACCTCAAGCATCTGAGTTTCCAAGAAAATGATCTTTCATTTCAGGTGGGATCTCATAGCAGGCAGAATTCCGGGGCGAAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGAGAGAGACAGAGAGATACAGGCAATGAGGGTTCAGTCAATAAGTCCTCAAAGACTTCTGATGGGTTCTCTACTTCATCGTTTGTGGTCTCCCTGAAGATAACCATCTCCCTAATAGCTTTAGTGTATTACAAGTACCCTTTCTAAGAACACATGGTATGGAACAGAGCTATCTTTTATCAATCAAATAACACAGTATAATTTATGATTCCAAATCAAAAACTAAAGCAAAGAGCAAAG

mRNA sequence

ATGGACAATCATCGTCACCAGAAACCGGCCAAAATCTCTCCACTAGAATCCGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCACAAGCTGATTGGAGATAGGTGGGATCTCATAGCAGGCAGAATTCCGGGGCGAAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA

Coding sequence (CDS)

ATGGACAATCATCGTCACCAGAAACCGGCCAAAATCTCTCCACTAGAATCCGAAGAAGTCAGCAGCACTAGGTGGCAGTTTATAACTATGACAGCACAAGAGGAAGATCTTATCCATAGAATGCACAAGCTGATTGGAGATAGGTGGGATCTCATAGCAGGCAGAATTCCGGGGCGAAAACCAGAAGAAATAGAGAGGTATTGGATAATGACTCACCTTGAAGGGTTTGGAAAAAGAAGAAGAGGATGA

Homology

[Close]

BLAST of CSPI05G03360 vs. Swiss-Prot
Match: TRY_ARATH (Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 1.2e-25
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  KI+  +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of CSPI05G03360 vs. Swiss-Prot
Match: CPC_ARATH (Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 6.9e-21
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R Q  AK S   SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 15 RRQSKAKASC--SEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 74

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 75 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of CSPI05G03360 vs. Swiss-Prot
Match: ETC2_ARATH (MYB-like transcription factor ETC2 OS=Arabidopsis thaliana GN=ETC2 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 4.5e-20
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 13 SPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTH 72
          S  +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIERYWIM +
Sbjct: 23 SRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIERYWIMRN 82

Query: 73 LEGFGKRRR 82
           + F  +RR
Sbjct: 83 SDYFSHKRR 91

[Close]

BLAST of CSPI05G03360 vs. Swiss-Prot
Match: TCL2_ARATH (MYB-like transcription factor TCL2 OS=Arabidopsis thaliana GN=TCL2 PE=1 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.7e-19
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +K +K +  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of CSPI05G03360 vs. Swiss-Prot
Match: ETC3_ARATH (MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-19
Identity = 43/73 (58.90%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPL---ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIP 60
          MDNHR  K  K + +    SEEVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGRIP
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGRIP 60

Query: 61 GRKPEEIERYWIM 71
          GR   EIER+W+M
Sbjct: 61 GRTAGEIERFWVM 73

[Close]

BLAST of CSPI05G03360 vs. TrEMBL
Match: I6NF75_CUCSA (R3 MYB transcription factor OS=Cucumis sativus GN=TRY PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 8.4e-42
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. TrEMBL
Match: M0TRZ1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-24
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDN R ++    S  ES+EVSS  WQFI MT QEEDLI+RM++L+GDRWD+IAGRIPGRK
Sbjct: 1  MDNRRKKQRRASSRRESQEVSSVEWQFINMTEQEEDLIYRMYRLVGDRWDIIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRR 82
          PEEIER+WIM H EGF   RR
Sbjct: 61 PEEIERFWIMRHGEGFAAARR 81

[Close]

BLAST of CSPI05G03360 vs. TrEMBL
Match: V4RM90_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006315mg PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.7e-24
Identity = 55/77 (71.43%), Postives = 64/77 (83.12%), Query Frame = 1


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +K AK SP ESEEV+ST W+FI MT  EEDLI+RMH+LIGDRWDLIAGRIPGRK EEI
Sbjct: 7  RRRKQAKTSPFESEEVNSTEWEFIDMTEPEEDLIYRMHRLIGDRWDLIAGRIPGRKAEEI 66

Query: 65 ERYWIMTHLEGFGKRRR 82
          ER+WIM + E F +RR+
Sbjct: 67 ERFWIMKNNEVFAERRK 83

[Close]

BLAST of CSPI05G03360 vs. TrEMBL
Match: U3PEL0_9BRAS (BVTRY-1 OS=Brassica villosa GN=BVTRY-1 PE=2 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-24
Identity = 52/80 (65.00%), Postives = 65/80 (81.25%), Query Frame = 1


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  K++  +SEEVSS  W+FI MT QEEDLI RMH+L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKVTLHDSEEVSSIEWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + +GF ++RR
Sbjct: 65 EEIERYWIMRNSDGFAEKRR 84

[Close]

BLAST of CSPI05G03360 vs. TrEMBL
Match: A0A061G2M4_THECC (Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_015351 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 4.6e-24
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MD  R +K  KI+  E EEVSS  W+FI +T QEEDLI+RMH+L+G+RWDLIAGRIPGRK
Sbjct: 1  MDRQRRRKQPKITTREYEEVSSIEWEFIKVTEQEEDLIYRMHRLVGERWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRR 82
           EEIER+WIM + EGF +RRR
Sbjct: 61 AEEIERFWIMQNNEGFAQRRR 81

[Close]

BLAST of CSPI05G03360 vs. TAIR10
Match: AT5G53200.1 (AT5G53200.1 Homeodomain-like superfamily protein)

HSP 1 Score: 116.7 bits (291), Expect = 6.8e-27
Identity = 53/80 (66.25%), Postives = 64/80 (80.00%), Query Frame = 1


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  KI+  +SEEVSS  W+FI MT QEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 5  DRRRRRKQHKIALHDSEEVSSIEWEFINMTEQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 64

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF  +RR
Sbjct: 65 EEIERYWIMRNSEGFADKRR 84

[Close]

BLAST of CSPI05G03360 vs. TAIR10
Match: AT2G46410.1 (AT2G46410.1 Homeodomain-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 3.9e-22
Identity = 49/77 (63.64%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R Q  AK S   SEEVSS  W+ + M+ +EEDLI RM+KL+GDRW+LIAGRIPGR PEEI
Sbjct: 15 RRQSKAKASC--SEEVSSIEWEAVKMSEEEEDLISRMYKLVGDRWELIAGRIPGRTPEEI 74

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYW+M H   F  RRR
Sbjct: 75 ERYWLMKHGVVFANRRR 89

[Close]

BLAST of CSPI05G03360 vs. TAIR10
Match: AT2G30420.1 (AT2G30420.1 Homeodomain-like superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 2.5e-21
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 1


Query: 13 SPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEIERYWIMTH 72
          S  +SEEVSS  W+FI+MT QEEDLI RM++L+G+RWDLIAGR+ GRK  EIERYWIM +
Sbjct: 23 SRYDSEEVSSIEWEFISMTEQEEDLISRMYRLVGNRWDLIAGRVVGRKANEIERYWIMRN 82

Query: 73 LEGFGKRRR 82
           + F  +RR
Sbjct: 83 SDYFSHKRR 91

[Close]

BLAST of CSPI05G03360 vs. TAIR10
Match: AT2G30424.1 (AT2G30424.1 Homeodomain-like superfamily protein)

HSP 1 Score: 96.3 bits (238), Expect = 9.5e-21
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = 1


Query: 5  RHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKPEEI 64
          R +K +K +  ++ EV+S +W+FI MT QEEDLI RMH+L+GDRWDLIAGR+ GR+ ++I
Sbjct: 11 RSRKQSKFTLGDTAEVNSVKWEFINMTEQEEDLIFRMHRLVGDRWDLIAGRVVGREAKDI 70

Query: 65 ERYWIMTHLEGFGKRRR 82
          ERYWIM + +    +RR
Sbjct: 71 ERYWIMRNCDHCSHKRR 87

[Close]

BLAST of CSPI05G03360 vs. TAIR10
Match: AT4G01060.1 (AT4G01060.1 CAPRICE-like MYB3)

HSP 1 Score: 93.2 bits (230), Expect = 8.1e-20
Identity = 42/75 (56.00%), Postives = 53/75 (70.67%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPL-----ESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGR 60
          MDNHR  K  K + +     E  EVSS  W+ + M+ +EEDL+ RMHKL+GDRW+LIAGR
Sbjct: 1  MDNHRRTKQPKTNSIVTSSSEGTEVSSLEWEVVNMSQEEEDLVSRMHKLVGDRWELIAGR 60

Query: 61 IPGRKPEEIERYWIM 71
          IPGR   EIER+W+M
Sbjct: 61 IPGRTAGEIERFWVM 75

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: gi|449456371|ref|XP_004145923.1| (PREDICTED: transcription factor TRY [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.2e-41
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: gi|659074382|ref|XP_008437574.1| (PREDICTED: transcription factor TRY [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 2.3e-40
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDNHRHQK AKISPL+SEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK
Sbjct: 1  MDNHRHQKQAKISPLDSEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRRG 83
          PEEIERYWIMTHLEGFGKRRRG
Sbjct: 61 PEEIERYWIMTHLEGFGKRRRG 82

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: gi|695051597|ref|XP_009413830.1| (PREDICTED: transcription factor TRY-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-24
Identity = 55/81 (67.90%), Postives = 64/81 (79.01%), Query Frame = 1


Query: 1  MDNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRK 60
          MDN R ++    S  ES+EVSS  WQFI MT QEEDLI+RM++L+GDRWD+IAGRIPGRK
Sbjct: 1  MDNRRKKQRRASSRRESQEVSSVEWQFINMTEQEEDLIYRMYRLVGDRWDIIAGRIPGRK 60

Query: 61 PEEIERYWIMTHLEGFGKRRR 82
          PEEIER+WIM H EGF   RR
Sbjct: 61 PEEIERFWIMRHGEGFAAARR 81

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: gi|727537878|ref|XP_010442878.1| (PREDICTED: transcription factor TRY-like [Camelina sativa])

HSP 1 Score: 119.8 bits (299), Expect = 2.3e-24
Identity = 55/80 (68.75%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  KI+  +SEEVSS  W+FI MTAQEEDLI RM++L+GDRWDLIAGRIPGR+P
Sbjct: 6  DRRRRRKQHKIALHDSEEVSSIEWEFINMTAQEEDLIFRMYRLVGDRWDLIAGRIPGRQP 65

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF ++RR
Sbjct: 66 EEIERYWIMRNSEGFAEKRR 85

[Close]

BLAST of CSPI05G03360 vs. NCBI nr
Match: gi|727423358|ref|XP_010445643.1| (PREDICTED: transcription factor TRY [Camelina sativa])

HSP 1 Score: 119.4 bits (298), Expect = 3.0e-24
Identity = 54/80 (67.50%), Postives = 66/80 (82.50%), Query Frame = 1


Query: 2  DNHRHQKPAKISPLESEEVSSTRWQFITMTAQEEDLIHRMHKLIGDRWDLIAGRIPGRKP 61
          D  R +K  KI+  +SEEVSS  W+FI MTAQEEDLI RM++L+GDRWDLIAGR+PGR+P
Sbjct: 6  DRRRRRKQHKIALHDSEEVSSIEWEFINMTAQEEDLIFRMYRLVGDRWDLIAGRVPGRQP 65

Query: 62 EEIERYWIMTHLEGFGKRRR 82
          EEIERYWIM + EGF ++RR
Sbjct: 66 EEIERYWIMRNSEGFAEKRR 85

The following BLAST results are available for this feature:

BLAST of CSPI05G03360 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TRY_ARATH	1.2e-25	66.25	Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1	[more]
CPC_ARATH	6.9e-21	63.64	Transcription factor CPC OS=Arabidopsis thaliana GN=CPC PE=1 SV=1	[more]
ETC2_ARATH	4.5e-20	63.77	MYB-like transcription factor ETC2 OS=Arabidopsis thaliana GN=ETC2 PE=1 SV=1	[more]
TCL2_ARATH	1.7e-19	54.55	MYB-like transcription factor TCL2 OS=Arabidopsis thaliana GN=TCL2 PE=1 SV=1	[more]
ETC3_ARATH	2.2e-19	58.90	MYB-like transcription factor ETC3 OS=Arabidopsis thaliana GN=ETC3 PE=2 SV=1	[more]

BLAST of CSPI05G03360 vs. TrEMBL


Match Name	E-value	Identity	Description
I6NF75_CUCSA	8.4e-42	100.00	R3 MYB transcription factor OS=Cucumis sativus GN=TRY PE=2 SV=1	[more]
M0TRZ1_MUSAM	1.6e-24	67.90	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
V4RM90_9ROSI	2.7e-24	71.43	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10006315mg PE=4 SV=1	[more]
U3PEL0_9BRAS	4.6e-24	65.00	BVTRY-1 OS=Brassica villosa GN=BVTRY-1 PE=2 SV=1	[more]
A0A061G2M4_THECC	4.6e-24	66.67	Homeodomain-like superfamily protein OS=Theobroma cacao GN=TCM_015351 PE=4 SV=1	[more]

BLAST of CSPI05G03360 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G53200.1	6.8e-27	66.25	Homeodomain-like superfamily protein	[more]
AT2G46410.1	3.9e-22	63.64	Homeodomain-like superfamily protein	[more]
AT2G30420.1	2.5e-21	63.77	Homeodomain-like superfamily protein	[more]
AT2G30424.1	9.5e-21	54.55	Homeodomain-like superfamily protein	[more]
AT4G01060.1	8.1e-20	56.00	CAPRICE-like MYB3	[more]

BLAST of CSPI05G03360 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456371\|ref\|XP_004145923.1\|	1.2e-41	100.00	PREDICTED: transcription factor TRY [Cucumis sativus]	[more]
gi\|659074382\|ref\|XP_008437574.1\|	2.3e-40	97.56	PREDICTED: transcription factor TRY [Cucumis melo]	[more]
gi\|695051597\|ref\|XP_009413830.1\|	2.3e-24	67.90	PREDICTED: transcription factor TRY-like [Musa acuminata subsp. malaccensis]	[more]
gi\|727537878\|ref\|XP_010442878.1\|	2.3e-24	68.75	PREDICTED: transcription factor TRY-like [Camelina sativa]	[more]
gi\|727423358\|ref\|XP_010445643.1\|	3.0e-24	67.50	PREDICTED: transcription factor TRY [Camelina sativa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0001708	cell fate specification
biological_process	GO:0009913	epidermal cell differentiation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010091	trichome branching
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI05G03360.1	CSPI05G03360.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 30..69 score: 1.
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 26..74 score: 8.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 31..69 score: 3.4
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 31..70 score: 8.5
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 10..77 score: 5.0
None	No IPR available	PANTHER	PTHR10641:SF620	SUBFAMILY NOT NAMED	coord: 10..77 score: 5.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI05G03360	Cla004910	Watermelon (97103) v1	cpiwmB416
CSPI05G03360	Csa5G139610	Cucumber (Chinese Long) v2	cpicuB240
CSPI05G03360	ClCG01G000590	Watermelon (Charleston Gray)	cpiwcgB379
CSPI05G03360	Lsi09G000400	Bottle gourd (USVL1VR-Ls)	cpilsiB322
CSPI05G03360	MELO3C034013.2	Melon (DHL92) v3.6.1	cpimedB338
CSPI05G03360	CsaV3_5G000690	Cucumber (Chinese Long) v3	cpicucB285
CSPI05G03360	Cla97C01G000650	Watermelon (97103) v2	cpiwmbB349
CSPI05G03360	Bhi12G000540	Wax gourd	cpiwgoB456
CSPI05G03360	Cucsa.201970	Cucumber (Gy14) v1	cgycpiB322
CSPI05G03360	CmaCh02G011010	Cucurbita maxima (Rimu)	cmacpiB618
CSPI05G03360	CmaCh15G010400	Cucurbita maxima (Rimu)	cmacpiB298
CSPI05G03360	CmoCh15G011000	Cucurbita moschata (Rifu)	cmocpiB288
CSPI05G03360	CmoCh02G011270	Cucurbita moschata (Rifu)	cmocpiB611
CSPI05G03360	Cp4.1LG05g06140	Cucurbita pepo (Zucchini)	cpecpiB733
CSPI05G03360	Cp4.1LG13g03040	Cucurbita pepo (Zucchini)	cpecpiB189
CSPI05G03360	CsGy5G000600	Cucumber (Gy14) v2	cgybcpiB226
CSPI05G03360	Carg14031	Silver-seed gourd	carcpiB0543
CSPI05G03360	Carg26219	Silver-seed gourd	carcpiB0333

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI05G03360	Cucurbita maxima (Rimu)	cmacpiB346
CSPI05G03360	Cucurbita maxima (Rimu)	cmacpiB425
CSPI05G03360	Cucurbita moschata (Rifu)	cmocpiB257
CSPI05G03360	Cucurbita moschata (Rifu)	cmocpiB337
CSPI05G03360	Cucurbita moschata (Rifu)	cmocpiB414
CSPI05G03360	Cucumber (Chinese Long) v2	cpicuB221
CSPI05G03360	Melon (DHL92) v3.5.1	cpimeB348
CSPI05G03360	Melon (DHL92) v3.5.1	cpimeB399
CSPI05G03360	Melon (DHL92) v3.5.1	cpimeB404
CSPI05G03360	Watermelon (Charleston Gray)	cpiwcgB410
CSPI05G03360	Watermelon (Charleston Gray)	cpiwcgB413
CSPI05G03360	Watermelon (97103) v1	cpiwmB406
CSPI05G03360	Watermelon (97103) v1	cpiwmB411
CSPI05G03360	Cucurbita pepo (Zucchini)	cpecpiB038
CSPI05G03360	Cucurbita pepo (Zucchini)	cpecpiB227
CSPI05G03360	Cucurbita pepo (Zucchini)	cpecpiB624
CSPI05G03360	Bottle gourd (USVL1VR-Ls)	cpilsiB381
CSPI05G03360	Bottle gourd (USVL1VR-Ls)	cpilsiB382
CSPI05G03360	Melon (DHL92) v3.6.1	cpimedB394
CSPI05G03360	Melon (DHL92) v3.6.1	cpimedB400
CSPI05G03360	Cucumber (Gy14) v2	cgybcpiB126
CSPI05G03360	Silver-seed gourd	carcpiB0576
CSPI05G03360	Silver-seed gourd	carcpiB1029
CSPI05G03360	Cucumber (Chinese Long) v3	cpicucB263
CSPI05G03360	Watermelon (97103) v2	cpiwmbB399
CSPI05G03360	Watermelon (97103) v2	cpiwmbB403
CSPI05G03360	Wax gourd	cpiwgoB484
CSPI05G03360	Wild cucumber (PI 183967)	cpicpiB110
CSPI05G03360	Cucumber (Gy14) v1	cgycpiB387