Lsi08G015920 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G015920
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGraves disease carrier
Locationchr08 : 23900411 .. 23903573 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATAATCATAACCAACTTTGTCAACCTCGCCGACGATCTTGTGAATAATGGATGTGACAACAATGTCGAATATCAAGGTGATTCTAACAAGGGTAATTTTGAAAGTTTTACCTCGTTGGGGTGACTGAATGACAAATTCAGCTCGAAACTAATGATACATAAAAATAATCAATACTTTCAATCAAATATGAAAATGAGATTAATCCATAAGGAAAAATCTAGTGCAAATAAGTATTTTTTTCCTATCAAAAGTCAGTGAACGAGGTAGAATTTTGCTCCGAATTTGAAAAACGCTCTGACAAGTCTATTATAATTATGGCACACGTAGTTCCGATAACAAAGGTTCCTCTAGACTATATTAAAAAAAAAAAGGTTCCTCTATACTAAAGTCAAAATTGGTTTAGTATACAAATTTAAATTAAATATTTCATTTCATTATCGTATTTTCAAGATAATTTAGGTTTGAATATTTCCAGACAAATTAGGTATGGTATCATAATAAGCAAATTCCAGATTGACTGACTCGGTCAATTATTTTGTAAAATGGTTAAACTTTATAAACATTGTTACTTTTATGTGTTAGTCTTTTTAAAGTAGAGATAAAACATTTAATATTATGTCATTCATTATTTGACATCATTTAATGATTTATGAATTTATTATTTATTTATTTTGATAGCAAGCAATGAATGAAAGTAGTGTGTAAAATTTTTCATACTATAATAGTACTATAAATTTCCTTTTCAGGTACAATATTAAATTTTAAAAAACTCAAAGTCGCAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAATATACAAATATTATTTTATATCATGGACTCAATTTTAGCATTTTTTTTAATTAATCATGTATATCATACATTGATACAAACATAAATGATATAATACTGTACTAAACAAATATTATTAATTAATAATTATTATATAAACGGACTAAATATTTAGTTCGTAGTTGTCATTTAATAATTATTTTTGTTCCAAATTTTATTTTTGGACTACTAATTCAATGCACCCTTATATTTATCTGGAAATGAATTTGTACTTTTCAATAGATCAAGGATTAGATAAAAAGAAGAGATTTCACAAGTTATTCCACTAATTGTCAATTAATTTAGAGGCAAAACATCATGTCAGTAAAACTAATAATAATAATATTAATAATAAAATCGGGATTCAATTCCAAATTTCCAAAATGATGAAGTAAAAAATTGATTGATTTAATATTTAATTAATTTTAAGGTTTAAATTATATTTTAGTTCCTAAACTTTAAATCTTCTTTTATTTTGGTCCCTAAACTTTCGTCTTAGTCCTTCAAATTTTTAAAAGTGTTTATTTTATATCTATTATTAAAATTATGTCAACTTTTTAATAAAAATGTGAGGGAACTTATATTTCCAGATGATTAGGCTCTAGATATATTGAACAATATGAAGATGAAGTAAAATGCCAACAACCAACACACTAACCAAAATTTTGAACTAAAAATGTCTTTTAAATTCTCCCACTTTGCCATGTTGTTCAAACTTGAAACTCTAAATTTTTTAGCTAACTTATTTAGTAGCCTAGTCGTCAAAAAATACGAGCCACCTTGCCAAAAATACGAGCCACCTTGCCATTTTTGTTGAGGAGTTAACAAAATCTTAATATAGTAAGAATCAAAATAAGCATTTTTTAAAAGTTTAAGGACTAAAAGGAATATTTTTAAAAGTTTAGGAATCAAAATATAGTATTATTCAAAATTTAGGAACTAAAATAAGATTTAAACCTAATTTTAAAGAATGCCTTCGACTTCTCATTTTTCTCTCATTGTCAGCTCCTTAGAAACACAACCTACTGTTCCTAGCTTATCTTTCTTATTTTAAAAGAAATATACAAAAATCTGAAAACAGCACAACACAGTCTATAATTTCTCAATCTCTCTTATTATTATTTTTTTAAATACAAAGAATCTCTTTTATTATTATTGTTATTTTTTCGAGATAATCAAATAATATCTTACCCCTACTCAAATTATATCGAACTTTAAATTAAATGCCAAGAATGGAAAACCAAGAATCCTCATATTTAAAAAAGAACTAAAAATATGAAATAAATTAAAATTAGTATAAAGCCGGCCACATAATCATAATTTATTTAAAAGAATTCAAATAAAAAAAATCACAATTAAAAAGAAAAAAATCCAGGTCCGTTTGATTCGGTCAACGGGGAACGTGGCAGCCACGTGGATAACCACAGTTGGTGGGTCCACCGAAGGTCTGATCGTAGCCGATTCTCCAACGCATCACGTTTCCGAGAAAGAAAAGGAAAAAAAAACAAATTTTAAAATCCCATTTAGAAACGCCTCGAAAGAACAAACCAATCCAGATTCCAGAGAGGAGAGGAAGACCCACAGAGAGGCGACCGGAGTAGACGGGGGATTCGGCGGAGCCGCGAGGAAAGATTCCCTTTCCCTTGCGGTTAAGAAGAACGGTTTCGATCTTATATATGTTGACTTTACTAAGCTTTCCATAAGAAACTGCGATTTATACTGACTCTTCTCCCGTCACCACTCAATCAAATCACGAGTAAGTTCTTCTCTCAACTTGTTGTTTGTTTTTTCTCTCCCGTGTTCGATTAGATTCCCTCTTTCGATGTATTTCCTTGTTTTGATTGGTTGTTCCTGGGGGGTTTTGGGTATTTTGTAATTTTCAATTTGGAAATCTCTCTGCGAATGGGGTTTTTGTTTTCATCGAAATCTTAACCAGGGTTCGAAGGGTATTCTTGTTTTGGTGGGATTTGTGTTGGGTTGCAACTGTTTTCTCTCTCTTTCTAAGTTTGTTGTGATCGAGTAATTCTTTACTATTACGATGATCGAATTCTGATGGGGGATTGGTATCTCTTTGATAGATTGATGGGGGCTTTGTTATAATTGAAGGGATTTGGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTGTGTCTGTTGAGAGAAAGGCTTTCTCACATTGTGTTCAGAGAGATAGATGGGATAAAGAATTCTTCAAGCTCCAGAGCGGATAA

mRNA sequence

ATGAACATAATCATAACCAACTTTGTCAACCTCGCCGACGATCTTGTGAATAATGGATGTGACAACAATGTCGAATATCAAGGTGATTCTAACAAGGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTGTGTCTGTTGAGAGAAAGGCTTTCTCACATTGTGTTCAGAGAGATAGATGGGATAAAGAATTCTTCAAGCTCCAGAGCGGATAA

Coding sequence (CDS)

ATGAACATAATCATAACCAACTTTGTCAACCTCGCCGACGATCTTGTGAATAATGGATGTGACAACAATGTCGAATATCAAGGTGATTCTAACAAGGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTGTGTCTGTTGAGAGAAAGGCTTTCTCACATTGTGTTCAGAGAGATAGATGGGATAAAGAATTCTTCAAGCTCCAGAGCGGATAA

Protein sequence

MNIIITNFVNLADDLVNNGCDNNVEYQGDSNKGSASLFLWMYLVVIQEEDRLVNLPKSFLGILRPPCVSVERKAFSHCVQRDRWDKEFFKLQSG
Homology
[Close]
BLAST of Lsi08G015920 vs. TrEMBL
Match: W9RE16_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019481 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 39  LWMYLVVIQEEDRLVNLPKSFLGILRP--PCVSVERKAFSHCVQRDRWDKEFFKLQSG 95
           LWMYLV+I+EE+RLVN+  S LG+L P      +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

[Close]
BLAST of Lsi08G015920 vs. TrEMBL
Match: A0A0B0P6Y9_GOSAR (Graves disease carrier OS=Gossypium arboreum GN=F383_30216 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-06
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 

Query: 41 MYLVVIQEEDRLVNLPKSFLGILRPP--CVSVERKAFSHCVQRDRWDKEFFKLQ 93
          MYLV ++ +DRLVNL    L  LRP    +  E+K+FS C+  DRWDKEFFKLQ
Sbjct: 1  MYLVSVEGKDRLVNLSGFDLDGLRPLKLLLPFEKKSFSFCIPIDRWDKEFFKLQ 54

[Close]
BLAST of Lsi08G015920 vs. NCBI nr
Match: gi|703100900|ref|XP_010097043.1| (hypothetical protein L484_019481 [Morus notabilis])

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-09
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 39  LWMYLVVIQEEDRLVNLPKSFLGILRP--PCVSVERKAFSHCVQRDRWDKEFFKLQSG 95
           LWMYLV+I+EE+RLVN+  S LG+L P      +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

[Close]
BLAST of Lsi08G015920 vs. NCBI nr
Match: gi|728843060|gb|KHG22503.1| (Graves disease carrier [Gossypium arboreum])

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-06
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 

Query: 41 MYLVVIQEEDRLVNLPKSFLGILRPP--CVSVERKAFSHCVQRDRWDKEFFKLQ 93
          MYLV ++ +DRLVNL    L  LRP    +  E+K+FS C+  DRWDKEFFKLQ
Sbjct: 1  MYLVSVEGKDRLVNLSGFDLDGLRPLKLLLPFEKKSFSFCIPIDRWDKEFFKLQ 54

The following BLAST results are available for this feature:
BLAST of Lsi08G015920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G015920 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RE16_9ROSA2.8e-0958.62Uncharacterized protein OS=Morus notabilis GN=L484_019481 PE=4 SV=1[more]
A0A0B0P6Y9_GOSAR4.9e-0655.56Graves disease carrier OS=Gossypium arboreum GN=F383_30216 PE=3 SV=1[more]
BLAST of Lsi08G015920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G015920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703100900|ref|XP_010097043.1|4.0e-0958.62hypothetical protein L484_019481 [Morus notabilis][more]
gi|728843060|gb|KHG22503.1|7.1e-0655.56Graves disease carrier [Gossypium arboreum][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G015920.1Lsi08G015920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G015920CmaCh05G000860Cucurbita maxima (Rimu)cmalsiB739
Lsi08G015920CmoCh12G005860Cucurbita moschata (Rifu)cmolsiB175
Lsi08G015920CmoCh05G000930Cucurbita moschata (Rifu)cmolsiB731
Lsi08G015920Cla97C08G160810Watermelon (97103) v2lsiwmbB444
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G015920Cucumber (Gy14) v1cgylsiB637
Lsi08G015920Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G015920Wild cucumber (PI 183967)cpilsiB141
Lsi08G015920Cucumber (Chinese Long) v2culsiB142
Lsi08G015920Melon (DHL92) v3.5.1lsimeB469
Lsi08G015920Watermelon (Charleston Gray)lsiwcgB438
Lsi08G015920Watermelon (97103) v1lsiwmB465
Lsi08G015920Cucumber (Gy14) v2cgyblsiB129
Lsi08G015920Melon (DHL92) v3.6.1lsimedB489
Lsi08G015920Silver-seed gourdcarlsiB164
Lsi08G015920Cucumber (Chinese Long) v3cuclsiB155
Lsi08G015920Wax gourdlsiwgoB591