CmaCh05G000860 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh05G000860
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionGraves disease carrier
LocationCma_Chr05 : 380667 .. 381532 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGTCCACGGAGGTCTGATTGTAGCCGATTCTCGAACGCATCACGTTTCCGAGAAAGAAAAGGAAGCGATACATTTTTTTAAACCCCATTAGAAGCGCTTCGGAAGAACAAACCAATCCAGAGGAGAGGAAGAGACCCACAGATAGAGATAGGCGGCGGAATAGACGGGGATTCGGCGGAGCCGCGAGGAGAGATTCCCTTTCCCTTGCGGTTAACCAGAACGGTTTCGATTATATATATGTTTATTTCACTAACCTTTCGCCAAGAAACTGCGATTTAGACTGCCCTTCTCCCGTCGTCACTTAGTCAAACCACGAGTACGTTCTTTCTTCAACTTGTTCTGTATTAGGTTTTCTCTTTTCGATGTATTTCCTTGTTTTGATACGTTGTTCGTGGTGGATTTTTGGTATTCTGTAGTTTCGATTTGTAAATCTCTATGCTAACTGGCCGATTTGCTTCATCGAACTCTTGATCCGGCGTGGAAGCGGATTCTTGTTTTGATTTGATCTGTATTAGGTCGCGGCAGTTTTTTTTTTTTTCACTGAATCTCTTGTAATCGAATATTTCTTTACGATTACGGTGATCGAATCCTGATGAGGGATTGGTATCTTTTTGATAGATTGATGGGGGAATTATTATATCTGAACGGGCTTTGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATTGGCTTGTGAATTGGCCCGATTCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTGAGAGAAAGGCCTTCTCACATTGTGTTTCGAGAGATAGATGGGATAAAGAATTCTTCAAGCTTCAGAGCGGATAA

mRNA sequence

ATGGTGGGTCCACGGAGAAGCGCTTCGGAAGAACAAACCAATCCAGAGGAGAGGAAGAGACCCACAGATAGAGATAGGCGGCGGAATAGACGGGGATTCGGCGGAGCCGCGAGGAGAGATTCCCTTTCCCTTGCGACTGCCCTTCTCCCGTCGTCACTTAGTCAAACCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATTGGCTTGTGAATTGGCCCGATTCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTGAGAGAAAGGCCTTCTCACATTGTGTTTCGAGAGATAGATGGGATAAAGAATTCTTCAAGCTTCAGAGCGGATAA

Coding sequence (CDS)

ATGGTGGGTCCACGGAGAAGCGCTTCGGAAGAACAAACCAATCCAGAGGAGAGGAAGAGACCCACAGATAGAGATAGGCGGCGGAATAGACGGGGATTCGGCGGAGCCGCGAGGAGAGATTCCCTTTCCCTTGCGACTGCCCTTCTCCCGTCGTCACTTAGTCAAACCACGAGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATTGGCTTGTGAATTGGCCCGATTCCTTTCTGGGTATTCTCAGGCCGCCTTGTCTGTCTGTTGAGAGAAAGGCCTTCTCACATTGTGTTTCGAGAGATAGATGGGATAAAGAATTCTTCAAGCTTCAGAGCGGATAA

Protein sequence

MVGPRRSASEEQTNPEERKRPTDRDRRRNRRGFGGAARRDSLSLATALLPSSLSQTTSSASLFLWMYLVVIQEEDWLVNWPDSFLGILRPPCLSVERKAFSHCVSRDRWDKEFFKLQSG
Homology
[Close]
BLAST of CmaCh05G000860 vs. TrEMBL
Match: W9RE16_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019481 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 64  LWMYLVVIQEEDWLVNWPDSFLGILRPPC-LS-VERKAFSHCVSRDRWDKEFFKLQSG 120
           LWMYLV+I+EE+ LVN  DS LG+L P   LS +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

[Close]
BLAST of CmaCh05G000860 vs. NCBI nr
Match: gi|703100900|ref|XP_010097043.1| (hypothetical protein L484_019481 [Morus notabilis])

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-08
Identity = 36/58 (62.07%), Postives = 43/58 (74.14%), Query Frame = 1 

Query: 64  LWMYLVVIQEEDWLVNWPDSFLGILRPPC-LS-VERKAFSHCVSRDRWDKEFFKLQSG 120
           LWMYLV+I+EE+ LVN  DS LG+L P   LS +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

The following BLAST results are available for this feature:
BLAST of CmaCh05G000860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmaCh05G000860 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RE16_9ROSA1.3e-0862.07Uncharacterized protein OS=Morus notabilis GN=L484_019481 PE=4 SV=1[more]
BLAST of CmaCh05G000860 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmaCh05G000860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703100900|ref|XP_010097043.1|1.9e-0862.07hypothetical protein L484_019481 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh05G000860.1CmaCh05G000860.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh05G000860CmoCh12G005860Cucurbita moschata (Rifu)cmacmoB770
CmaCh05G000860CmoCh05G000930Cucurbita moschata (Rifu)cmacmoB786
CmaCh05G000860Lsi08G015920Bottle gourd (USVL1VR-Ls)cmalsiB739
CmaCh05G000860Cla97C08G160810Watermelon (97103) v2cmawmbB832
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh05G000860Cucumber (Chinese Long) v3cmacucB0926
CmaCh05G000860Wax gourdcmawgoB0943
CmaCh05G000860Cucumber (Gy14) v1cgycmaB1094
CmaCh05G000860Wild cucumber (PI 183967)cmacpiB793
CmaCh05G000860Cucumber (Chinese Long) v2cmacuB784
CmaCh05G000860Melon (DHL92) v3.5.1cmameB727
CmaCh05G000860Watermelon (Charleston Gray)cmawcgB712
CmaCh05G000860Watermelon (97103) v1cmawmB753
CmaCh05G000860Cucurbita pepo (Zucchini)cmacpeB766
CmaCh05G000860Cucumber (Gy14) v2cgybcmaB250
CmaCh05G000860Melon (DHL92) v3.6.1cmamedB821
CmaCh05G000860Silver-seed gourdcarcmaB0256