Lsi08G015920.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G015920.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionGraves disease carrier
Locationchr08 : 23900411 .. 23903573 (-)
Sequence length285
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACATAATCATAACCAACTTTGTCAACCTCGCCGACGATCTTGTGAATAATGGATGTGACAACAATGTCGAATATCAAGGTGATTCTAACAAGGGTAATTTTGAAAGTTTTACCTCGTTGGGGTGACTGAATGACAAATTCAGCTCGAAACTAATGATACATAAAAATAATCAATACTTTCAATCAAATATGAAAATGAGATTAATCCATAAGGAAAAATCTAGTGCAAATAAGTATTTTTTTCCTATCAAAAGTCAGTGAACGAGGTAGAATTTTGCTCCGAATTTGAAAAACGCTCTGACAAGTCTATTATAATTATGGCACACGTAGTTCCGATAACAAAGGTTCCTCTAGACTATATTAAAAAAAAAAAGGTTCCTCTATACTAAAGTCAAAATTGGTTTAGTATACAAATTTAAATTAAATATTTCATTTCATTATCGTATTTTCAAGATAATTTAGGTTTGAATATTTCCAGACAAATTAGGTATGGTATCATAATAAGCAAATTCCAGATTGACTGACTCGGTCAATTATTTTGTAAAATGGTTAAACTTTATAAACATTGTTACTTTTATGTGTTAGTCTTTTTAAAGTAGAGATAAAACATTTAATATTATGTCATTCATTATTTGACATCATTTAATGATTTATGAATTTATTATTTATTTATTTTGATAGCAAGCAATGAATGAAAGTAGTGTGTAAAATTTTTCATACTATAATAGTACTATAAATTTCCTTTTCAGGTACAATATTAAATTTTAAAAAACTCAAAGTCGCAAAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAATATACAAATATTATTTTATATCATGGACTCAATTTTAGCATTTTTTTTAATTAATCATGTATATCATACATTGATACAAACATAAATGATATAATACTGTACTAAACAAATATTATTAATTAATAATTATTATATAAACGGACTAAATATTTAGTTCGTAGTTGTCATTTAATAATTATTTTTGTTCCAAATTTTATTTTTGGACTACTAATTCAATGCACCCTTATATTTATCTGGAAATGAATTTGTACTTTTCAATAGATCAAGGATTAGATAAAAAGAAGAGATTTCACAAGTTATTCCACTAATTGTCAATTAATTTAGAGGCAAAACATCATGTCAGTAAAACTAATAATAATAATATTAATAATAAAATCGGGATTCAATTCCAAATTTCCAAAATGATGAAGTAAAAAATTGATTGATTTAATATTTAATTAATTTTAAGGTTTAAATTATATTTTAGTTCCTAAACTTTAAATCTTCTTTTATTTTGGTCCCTAAACTTTCGTCTTAGTCCTTCAAATTTTTAAAAGTGTTTATTTTATATCTATTATTAAAATTATGTCAACTTTTTAATAAAAATGTGAGGGAACTTATATTTCCAGATGATTAGGCTCTAGATATATTGAACAATATGAAGATGAAGTAAAATGCCAACAACCAACACACTAACCAAAATTTTGAACTAAAAATGTCTTTTAAATTCTCCCACTTTGCCATGTTGTTCAAACTTGAAACTCTAAATTTTTTAGCTAACTTATTTAGTAGCCTAGTCGTCAAAAAATACGAGCCACCTTGCCAAAAATACGAGCCACCTTGCCATTTTTGTTGAGGAGTTAACAAAATCTTAATATAGTAAGAATCAAAATAAGCATTTTTTAAAAGTTTAAGGACTAAAAGGAATATTTTTAAAAGTTTAGGAATCAAAATATAGTATTATTCAAAATTTAGGAACTAAAATAAGATTTAAACCTAATTTTAAAGAATGCCTTCGACTTCTCATTTTTCTCTCATTGTCAGCTCCTTAGAAACACAACCTACTGTTCCTAGCTTATCTTTCTTATTTTAAAAGAAATATACAAAAATCTGAAAACAGCACAACACAGTCTATAATTTCTCAATCTCTCTTATTATTATTTTTTTAAATACAAAGAATCTCTTTTATTATTATTGTTATTTTTTCGAGATAATCAAATAATATCTTACCCCTACTCAAATTATATCGAACTTTAAATTAAATGCCAAGAATGGAAAACCAAGAATCCTCATATTTAAAAAAGAACTAAAAATATGAAATAAATTAAAATTAGTATAAAGCCGGCCACATAATCATAATTTATTTAAAAGAATTCAAATAAAAAAAATCACAATTAAAAAGAAAAAAATCCAGGTCCGTTTGATTCGGTCAACGGGGAACGTGGCAGCCACGTGGATAACCACAGTTGGTGGGTCCACCGAAGGTCTGATCGTAGCCGATTCTCCAACGCATCACGTTTCCGAGAAAGAAAAGGAAAAAAAAACAAATTTTAAAATCCCATTTAGAAACGCCTCGAAAGAACAAACCAATCCAGATTCCAGAGAGGAGAGGAAGACCCACAGAGAGGCGACCGGAGTAGACGGGGGATTCGGCGGAGCCGCGAGGAAAGATTCCCTTTCCCTTGCGGTTAAGAAGAACGGTTTCGATCTTATATATGTTGACTTTACTAAGCTTTCCATAAGAAACTGCGATTTATACTGACTCTTCTCCCGTCACCACTCAATCAAATCACGAGTAAGTTCTTCTCTCAACTTGTTGTTTGTTTTTTCTCTCCCGTGTTCGATTAGATTCCCTCTTTCGATGTATTTCCTTGTTTTGATTGGTTGTTCCTGGGGGGTTTTGGGTATTTTGTAATTTTCAATTTGGAAATCTCTCTGCGAATGGGGTTTTTGTTTTCATCGAAATCTTAACCAGGGTTCGAAGGGTATTCTTGTTTTGGTGGGATTTGTGTTGGGTTGCAACTGTTTTCTCTCTCTTTCTAAGTTTGTTGTGATCGAGTAATTCTTTACTATTACGATGATCGAATTCTGATGGGGGATTGGTATCTCTTTGATAGATTGATGGGGGCTTTGTTATAATTGAAGGGATTTGGAATATATTTGGTCTGCAGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTGTGTCTGTTGAGAGAAAGGCTTTCTCACATTGTGTTCAGAGAGATAGATGGGATAAAGAATTCTTCAAGCTCCAGAGCGGATAA

mRNA sequence

ATGAACATAATCATAACCAACTTTGTCAACCTCGCCGACGATCTTGTGAATAATGGATGTGACAACAATGTCGAATATCAAGGTGATTCTAACAAGGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTGTGTCTGTTGAGAGAAAGGCTTTCTCACATTGTGTTCAGAGAGATAGATGGGATAAAGAATTCTTCAAGCTCCAGAGCGGATAA

Coding sequence (CDS)

ATGAACATAATCATAACCAACTTTGTCAACCTCGCCGACGATCTTGTGAATAATGGATGTGACAACAATGTCGAATATCAAGGTGATTCTAACAAGGGCTCAGCTTCATTGTTCCTGTGGATGTATCTTGTCGTCATTCAAGAAGAAGATCGGCTTGTGAATTTGCCCAAATCCTTTCTGGGTATTCTCAGGCCGCCTTGTGTGTCTGTTGAGAGAAAGGCTTTCTCACATTGTGTTCAGAGAGATAGATGGGATAAAGAATTCTTCAAGCTCCAGAGCGGATAA

Protein sequence

MNIIITNFVNLADDLVNNGCDNNVEYQGDSNKGSASLFLWMYLVVIQEEDRLVNLPKSFLGILRPPCVSVERKAFSHCVQRDRWDKEFFKLQSG
Homology
[Close]
BLAST of Lsi08G015920.1 vs. TrEMBL
Match: W9RE16_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019481 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-09
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 39  LWMYLVVIQEEDRLVNLPKSFLGILRP--PCVSVERKAFSHCVQRDRWDKEFFKLQSG 95
           LWMYLV+I+EE+RLVN+  S LG+L P      +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

[Close]
BLAST of Lsi08G015920.1 vs. TrEMBL
Match: A0A0B0P6Y9_GOSAR (Graves disease carrier OS=Gossypium arboreum GN=F383_30216 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.9e-06
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 

Query: 41 MYLVVIQEEDRLVNLPKSFLGILRPP--CVSVERKAFSHCVQRDRWDKEFFKLQ 93
          MYLV ++ +DRLVNL    L  LRP    +  E+K+FS C+  DRWDKEFFKLQ
Sbjct: 1  MYLVSVEGKDRLVNLSGFDLDGLRPLKLLLPFEKKSFSFCIPIDRWDKEFFKLQ 54

[Close]
BLAST of Lsi08G015920.1 vs. NCBI nr
Match: gi|703100900|ref|XP_010097043.1| (hypothetical protein L484_019481 [Morus notabilis])

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-09
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 

Query: 39  LWMYLVVIQEEDRLVNLPKSFLGILRP--PCVSVERKAFSHCVQRDRWDKEFFKLQSG 95
           LWMYLV+I+EE+RLVN+  S LG+L P      +E+KAF+  V R RWDKEFF LQ G
Sbjct: 88  LWMYLVIIEEENRLVNVADSSLGVLSPRIRLSFLEQKAFAFGVPRARWDKEFFALQGG 145

[Close]
BLAST of Lsi08G015920.1 vs. NCBI nr
Match: gi|728843060|gb|KHG22503.1| (Graves disease carrier [Gossypium arboreum])

HSP 1 Score: 58.5 bits (140), Expect = 7.1e-06
Identity = 30/54 (55.56%), Postives = 37/54 (68.52%), Query Frame = 1 

Query: 41 MYLVVIQEEDRLVNLPKSFLGILRPP--CVSVERKAFSHCVQRDRWDKEFFKLQ 93
          MYLV ++ +DRLVNL    L  LRP    +  E+K+FS C+  DRWDKEFFKLQ
Sbjct: 1  MYLVSVEGKDRLVNLSGFDLDGLRPLKLLLPFEKKSFSFCIPIDRWDKEFFKLQ 54

The following BLAST results are available for this feature:
BLAST of Lsi08G015920.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G015920.1 vs. TrEMBL
Match NameE-valueIdentityDescription
W9RE16_9ROSA2.8e-0958.62Uncharacterized protein OS=Morus notabilis GN=L484_019481 PE=4 SV=1[more]
A0A0B0P6Y9_GOSAR4.9e-0655.56Graves disease carrier OS=Gossypium arboreum GN=F383_30216 PE=3 SV=1[more]
BLAST of Lsi08G015920.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G015920.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|703100900|ref|XP_010097043.1|4.0e-0958.62hypothetical protein L484_019481 [Morus notabilis][more]
gi|728843060|gb|KHG22503.1|7.1e-0655.56Graves disease carrier [Gossypium arboreum][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi08G015920Lsi08G015920gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G015920.1.CDS.2Lsi08G015920.1.CDS.2CDS
Lsi08G015920.1.CDS.1Lsi08G015920.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi08G015920.1Lsi08G015920.1-proteinpolypeptide