Lsi08G012140 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G012140
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 20650845 .. 20653149 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCTGCATTATAAAAGGGCATTTTGTGCCCCCATTAAATAGATTCTGGCCAAAATCGGAAGGTTAAGGATGATCTTTATTAGATACATAAATTACTTCTCAGATTGTTAATTGATTTTTAAATGGAATAACACGTTTAATAAGTTGCACCCACTCCTATACTCATAGATCTTGTGGACTTTGTGTGTGCATAAAAATGCTTGCTTCTTGGACAGTGTTGGTCAGGACATATATAAATTATGATTATAATCGTGGGTAGACAACCAATTATCATAAGTTAACTTCTTTGAGAAAATATTAAATATACTTAGAAGGCTTAAGCCAGGGTATCCATAACCTATAGATATTTGAGGTTACTGTTTACTATAAGGTAAGAAATTCACTCTGCAGAGTCAGAGCACCCCCCACCACCAAGCCAAGTACTAGACAGTCTTGACATTTGTAAGGAACAGTTCCACGAGATTCAAAATTGTAAATTGTGAAATTATCTCAACCCAAGTTGTGTTAAGAAGGTTTAATGATTTCTTGAAGTAATGGGCTGATGTAGGTCTATTCTTTCTTCAGTGAGCTTAATTTGCGGTTGATTATAGGAAGATTTGTGCTGAGTTTCTCTCCATGTGGAATATTGAAATTTCTATTCTAGAACTCCTCTAGCTTTTGTTGTTTTTCTCACTGCATTCTATCTACACACTATCCTGATGGTTTAGTTACAATTATGCTGTGAGCCTATGGCTTTCCTGTTAAGTTCATCGGATTTGACAATGCTTCAAACCTTCTAAACCACTGATCAAGAGATGTTAAGATAGAGTCGGCAATTGGGTGCTTTATTAGAACATATGTTGAGTTTCTATTGCTGACAAGCTTATTACCGATGTTGCAGAGGAAGTGCTATAAAGGAATAGATGACAAAGCTACCCTCTGACATTGTTGCATCAATAACCATTGCAGTGGCTTTCTTTCTTTCCGTAATGTATGCACCACAATGCAAATGGGGGAACTTGAATTGGTTGTATTTTTAGTTATATTAGCTTAAAATCTGCTCTGCCTAAAATTCAACATCTTATTTCACTATTTTGTGTTATAAGGCCTGTAATATTTTCCAATATGCCAAGATGAAAACACACCAACTTCATAAACAAATCCAGCTGTCATACTGTTGTTTCTTCTATTCAATCGTGCTTGCCTTCAATATCATATCTTGTTGCAGGTAGTTCCACGATCATATCTGATAATGGTAGCACTATGAGATGTGGAGCACTTAAGACAAGGGAACAACATGGTTAGTGAAGGATGACAATTTCAAATTCACTCTTGAGGATTCGATAGCAGAAAAACTTAACTAGCCCACGCAGAAGTTTCTGATACATGGTACATTTAACATTGATGAGAGATTAACTAACTATAGCACAAAGTACTCTTGAGTTGTTGAAGGCCTTAAATACCAATAAATTCTTTAAGGTTTGTGTTAGGTATCCAAACCCAAAAAATGCAAGGATAGAACTATATTGCAATAGGAAAAGTTACAAAAACAAACAAGTAAAACCAGGTACTTGCACCTTCCTCTTGGAATCTCAGACCTTGGGCCTGAGAAACGGGCTTGTCTTTTTATCCCTTATAAATTTCTCTAATGTACATATGTACTCTCCATTTATGCAAGCTACCTGCTTCCGAGACCAATAAATGATTTGGAAGTAGATTTTGAAAATACCAAGCTGAAAAATAAAAATCTTCAGCAAACTATTTTAGTGTAGAAGGAAAAAGAATCTGAATTTCTGAGTTTTTCCAGTAAAGAGTTAGCTGAAGTTGGTATGTTGACATTGATAGGTGGTTATTGTATCTGGTTGTGTTAGTTGGAATGTAGAGTCAATCAAGATCTTTGTCAAAGATGTTTAATCAAAGCACTCACAGAAAAGGCCAAGGGAAGAGGTAGTTTATTGAGACTTCTGCTTGTTGGGGAAGACGTCAAGTAAGAAAACAGATTTATAATTGCTTGCAAGTATTAGTTTCATTTTCATAGTCAAATCTGTTTTTAAGACTAATTGTGTTTAACATCTTTACATTGTAGAAGGATGAGGTTTCGTTGTCGAGAGATTGACAAAAGGGCCTGAATGGATGACAATGAAGATGAGTCAATAATAGATGCAGAATCCAGGAAGTTGCTATCAGATATCTTCATAGATAATGCTAGATTGAGGAAACCACTCTCTTCTCCAAATACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTCTTGTAAGTAA

mRNA sequence

ATGTTCGTAAGAAATTCACTCTGCAGAGTCAGAGCACCCCCCACCACCAAGCCAAGTAGTTCCACGATCATATCTGATAATGGTAGCACTATGAGATGTGGAGCACTTAAGACAAGGGAACAACATGAATCCAGGAAGTTGCTATCAGATATCTTCATAGATAATGCTAGATTGAGGAAACCACTCTCTTCTCCAAATACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTCTTGTAAGTAA

Coding sequence (CDS)

ATGTTCGTAAGAAATTCACTCTGCAGAGTCAGAGCACCCCCCACCACCAAGCCAAGTAGTTCCACGATCATATCTGATAATGGTAGCACTATGAGATGTGGAGCACTTAAGACAAGGGAACAACATGAATCCAGGAAGTTGCTATCAGATATCTTCATAGATAATGCTAGATTGAGGAAACCACTCTCTTCTCCAAATACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTCTTGTAAGTAA

Protein sequence

MFVRNSLCRVRAPPTTKPSSSTIISDNGSTMRCGALKTREQHESRKLLSDIFIDNARLRKPLSSPNTSCCQNRMIGSEKVDWEVISRDALSCK
Homology
[Close]
BLAST of Lsi08G012140 vs. TrEMBL
Match: A0A0A0LME2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381880 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 33  CGALKTREQHESRKLLSDIFIDNARLRKPLSSPNTSCCQNRMIGSEKVDWEVISRDAL 91
           CG ++ +        + +++  N RLR PL S  TSCCQNRMIGS+KVDWEVISRDAL
Sbjct: 149 CGWMRMKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDAL 206

[Close]
BLAST of Lsi08G012140 vs. NCBI nr
Match: gi|700207844|gb|KGN62963.1| (hypothetical protein Csa_2G381880 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 33  CGALKTREQHESRKLLSDIFIDNARLRKPLSSPNTSCCQNRMIGSEKVDWEVISRDAL 91
           CG ++ +        + +++  N RLR PL S  TSCCQNRMIGS+KVDWEVISRDAL
Sbjct: 149 CGWMRMKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDAL 206

The following BLAST results are available for this feature:
BLAST of Lsi08G012140 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G012140 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LME2_CUCSA3.3e-1055.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381880 PE=4 SV=1[more]
BLAST of Lsi08G012140 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G012140 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207844|gb|KGN62963.1|4.7e-1055.17hypothetical protein Csa_2G381880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G012140.1Lsi08G012140.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G012140Csa2G381880Cucumber (Chinese Long) v2culsiB140
Lsi08G012140CsaV3_2G032180Cucumber (Chinese Long) v3cuclsiB152
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G012140Cucumber (Gy14) v2cgyblsiB126
Lsi08G012140Cucumber (Gy14) v2cgyblsiB128
Lsi08G012140Melon (DHL92) v3.6.1lsimedB493
Lsi08G012140Silver-seed gourdcarlsiB128
Lsi08G012140Silver-seed gourdcarlsiB580
Lsi08G012140Silver-seed gourdcarlsiB898
Lsi08G012140Cucumber (Chinese Long) v3cuclsiB154
Lsi08G012140Cucumber (Chinese Long) v3cuclsiB337
Lsi08G012140Watermelon (97103) v2lsiwmbB430
Lsi08G012140Watermelon (97103) v2lsiwmbB444
Lsi08G012140Wax gourdlsiwgoB603
Lsi08G012140Bottle gourd (USVL1VR-Ls)lsilsiB151
Lsi08G012140Cucumber (Gy14) v1cgylsiB116
Lsi08G012140Cucumber (Gy14) v1cgylsiB267
Lsi08G012140Cucurbita maxima (Rimu)cmalsiB039
Lsi08G012140Cucurbita maxima (Rimu)cmalsiB184
Lsi08G012140Cucurbita maxima (Rimu)cmalsiB460
Lsi08G012140Cucurbita maxima (Rimu)cmalsiB739
Lsi08G012140Cucurbita moschata (Rifu)cmolsiB027
Lsi08G012140Cucurbita moschata (Rifu)cmolsiB070
Lsi08G012140Cucurbita moschata (Rifu)cmolsiB175
Lsi08G012140Cucurbita moschata (Rifu)cmolsiB445
Lsi08G012140Cucurbita moschata (Rifu)cmolsiB731
Lsi08G012140Cucurbita pepo (Zucchini)cpelsiB100
Lsi08G012140Cucurbita pepo (Zucchini)cpelsiB651
Lsi08G012140Cucurbita pepo (Zucchini)cpelsiB685
Lsi08G012140Wild cucumber (PI 183967)cpilsiB139
Lsi08G012140Wild cucumber (PI 183967)cpilsiB140
Lsi08G012140Wild cucumber (PI 183967)cpilsiB317
Lsi08G012140Melon (DHL92) v3.5.1lsimeB474
Lsi08G012140Watermelon (Charleston Gray)lsiwcgB422
Lsi08G012140Watermelon (Charleston Gray)lsiwcgB434
Lsi08G012140Watermelon (Charleston Gray)lsiwcgB438
Lsi08G012140Watermelon (97103) v1lsiwmB465
Lsi08G012140Watermelon (97103) v1lsiwmB479
Lsi08G012140Watermelon (97103) v1lsiwmB484