Lsi08G012140.1 (mRNA) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G012140.1
TypemRNA
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 20650845 .. 20653149 (-)
Sequence length282
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGTCTGCATTATAAAAGGGCATTTTGTGCCCCCATTAAATAGATTCTGGCCAAAATCGGAAGGTTAAGGATGATCTTTATTAGATACATAAATTACTTCTCAGATTGTTAATTGATTTTTAAATGGAATAACACGTTTAATAAGTTGCACCCACTCCTATACTCATAGATCTTGTGGACTTTGTGTGTGCATAAAAATGCTTGCTTCTTGGACAGTGTTGGTCAGGACATATATAAATTATGATTATAATCGTGGGTAGACAACCAATTATCATAAGTTAACTTCTTTGAGAAAATATTAAATATACTTAGAAGGCTTAAGCCAGGGTATCCATAACCTATAGATATTTGAGGTTACTGTTTACTATAAGGTAAGAAATTCACTCTGCAGAGTCAGAGCACCCCCCACCACCAAGCCAAGTACTAGACAGTCTTGACATTTGTAAGGAACAGTTCCACGAGATTCAAAATTGTAAATTGTGAAATTATCTCAACCCAAGTTGTGTTAAGAAGGTTTAATGATTTCTTGAAGTAATGGGCTGATGTAGGTCTATTCTTTCTTCAGTGAGCTTAATTTGCGGTTGATTATAGGAAGATTTGTGCTGAGTTTCTCTCCATGTGGAATATTGAAATTTCTATTCTAGAACTCCTCTAGCTTTTGTTGTTTTTCTCACTGCATTCTATCTACACACTATCCTGATGGTTTAGTTACAATTATGCTGTGAGCCTATGGCTTTCCTGTTAAGTTCATCGGATTTGACAATGCTTCAAACCTTCTAAACCACTGATCAAGAGATGTTAAGATAGAGTCGGCAATTGGGTGCTTTATTAGAACATATGTTGAGTTTCTATTGCTGACAAGCTTATTACCGATGTTGCAGAGGAAGTGCTATAAAGGAATAGATGACAAAGCTACCCTCTGACATTGTTGCATCAATAACCATTGCAGTGGCTTTCTTTCTTTCCGTAATGTATGCACCACAATGCAAATGGGGGAACTTGAATTGGTTGTATTTTTAGTTATATTAGCTTAAAATCTGCTCTGCCTAAAATTCAACATCTTATTTCACTATTTTGTGTTATAAGGCCTGTAATATTTTCCAATATGCCAAGATGAAAACACACCAACTTCATAAACAAATCCAGCTGTCATACTGTTGTTTCTTCTATTCAATCGTGCTTGCCTTCAATATCATATCTTGTTGCAGGTAGTTCCACGATCATATCTGATAATGGTAGCACTATGAGATGTGGAGCACTTAAGACAAGGGAACAACATGGTTAGTGAAGGATGACAATTTCAAATTCACTCTTGAGGATTCGATAGCAGAAAAACTTAACTAGCCCACGCAGAAGTTTCTGATACATGGTACATTTAACATTGATGAGAGATTAACTAACTATAGCACAAAGTACTCTTGAGTTGTTGAAGGCCTTAAATACCAATAAATTCTTTAAGGTTTGTGTTAGGTATCCAAACCCAAAAAATGCAAGGATAGAACTATATTGCAATAGGAAAAGTTACAAAAACAAACAAGTAAAACCAGGTACTTGCACCTTCCTCTTGGAATCTCAGACCTTGGGCCTGAGAAACGGGCTTGTCTTTTTATCCCTTATAAATTTCTCTAATGTACATATGTACTCTCCATTTATGCAAGCTACCTGCTTCCGAGACCAATAAATGATTTGGAAGTAGATTTTGAAAATACCAAGCTGAAAAATAAAAATCTTCAGCAAACTATTTTAGTGTAGAAGGAAAAAGAATCTGAATTTCTGAGTTTTTCCAGTAAAGAGTTAGCTGAAGTTGGTATGTTGACATTGATAGGTGGTTATTGTATCTGGTTGTGTTAGTTGGAATGTAGAGTCAATCAAGATCTTTGTCAAAGATGTTTAATCAAAGCACTCACAGAAAAGGCCAAGGGAAGAGGTAGTTTATTGAGACTTCTGCTTGTTGGGGAAGACGTCAAGTAAGAAAACAGATTTATAATTGCTTGCAAGTATTAGTTTCATTTTCATAGTCAAATCTGTTTTTAAGACTAATTGTGTTTAACATCTTTACATTGTAGAAGGATGAGGTTTCGTTGTCGAGAGATTGACAAAAGGGCCTGAATGGATGACAATGAAGATGAGTCAATAATAGATGCAGAATCCAGGAAGTTGCTATCAGATATCTTCATAGATAATGCTAGATTGAGGAAACCACTCTCTTCTCCAAATACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTCTTGTAAGTAA

mRNA sequence

ATGTTCGTAAGAAATTCACTCTGCAGAGTCAGAGCACCCCCCACCACCAAGCCAAGTAGTTCCACGATCATATCTGATAATGGTAGCACTATGAGATGTGGAGCACTTAAGACAAGGGAACAACATGAATCCAGGAAGTTGCTATCAGATATCTTCATAGATAATGCTAGATTGAGGAAACCACTCTCTTCTCCAAATACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTCTTGTAAGTAA

Coding sequence (CDS)

ATGTTCGTAAGAAATTCACTCTGCAGAGTCAGAGCACCCCCCACCACCAAGCCAAGTAGTTCCACGATCATATCTGATAATGGTAGCACTATGAGATGTGGAGCACTTAAGACAAGGGAACAACATGAATCCAGGAAGTTGCTATCAGATATCTTCATAGATAATGCTAGATTGAGGAAACCACTCTCTTCTCCAAATACGTCATGCTGTCAGAACAGAATGATTGGATCCGAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTCTTGTAAGTAA

Protein sequence

MFVRNSLCRVRAPPTTKPSSSTIISDNGSTMRCGALKTREQHESRKLLSDIFIDNARLRKPLSSPNTSCCQNRMIGSEKVDWEVISRDALSCK
Homology
[Close]
BLAST of Lsi08G012140.1 vs. TrEMBL
Match: A0A0A0LME2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381880 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.3e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 33  CGALKTREQHESRKLLSDIFIDNARLRKPLSSPNTSCCQNRMIGSEKVDWEVISRDAL 91
           CG ++ +        + +++  N RLR PL S  TSCCQNRMIGS+KVDWEVISRDAL
Sbjct: 149 CGWMRMKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDAL 206

[Close]
BLAST of Lsi08G012140.1 vs. NCBI nr
Match: gi|700207844|gb|KGN62963.1| (hypothetical protein Csa_2G381880 [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 4.7e-10
Identity = 32/58 (55.17%), Postives = 40/58 (68.97%), Query Frame = 1 

Query: 33  CGALKTREQHESRKLLSDIFIDNARLRKPLSSPNTSCCQNRMIGSEKVDWEVISRDAL 91
           CG ++ +        + +++  N RLR PL S  TSCCQNRMIGS+KVDWEVISRDAL
Sbjct: 149 CGWMRMKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDAL 206

The following BLAST results are available for this feature:
BLAST of Lsi08G012140.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G012140.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LME2_CUCSA3.3e-1055.17Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381880 PE=4 SV=1[more]
BLAST of Lsi08G012140.1 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G012140.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207844|gb|KGN62963.1|4.7e-1055.17hypothetical protein Csa_2G381880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Lsi08G012140Lsi08G012140gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Lsi08G012140.1.CDS.4Lsi08G012140.1.CDS.4CDS
Lsi08G012140.1.CDS.3Lsi08G012140.1.CDS.3CDS
Lsi08G012140.1.CDS.2Lsi08G012140.1.CDS.2CDS
Lsi08G012140.1.CDS.1Lsi08G012140.1.CDS.1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Lsi08G012140.1Lsi08G012140.1-proteinpolypeptide