Csa2G381880 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa2G381880
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr2 : 19657448 .. 19658586 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGCATCAGTTTCATATGGTGGCTTCTATGGTTATCTATCAAACTTTTCTGGGAGCAGGAATTTGGCTAGAAAATTTGATACAAGTTATCTGCGAGGTAGTGACTTTAATATCTTGAATCAGATGAGGAAAATTGCAGTACAGCTCAAAATCTTGGGCACGCTAATTTTTCATGTTTACTTCTGGGTTGAAGTTAAATTGCATAAAAAGTCATTTATAACAGAAACCAACACTGAAGATCTAACTGTATACTACATGAATATGATGCTCAGTTCTGGGTTGAAGTACTAATAGAACTTGGTTGTGATAAACCTTGGGCCTGAGAAATGGGCTCGTCTATTGATCCTTTTTAAATTTCTTAACGTACATATGGAGTCTCCAGCTATGCAAGCTACCTGCTTTGGACCAATAAAGGATTTGGAACTAGATTTTGAAAATACCAAACTGAAAAGATAACTTTTCAGCAGGCTATTTTAGTGTAGAAGGAAAAAACTAGCCATCTGAGCCGTGAAGGAATTTCCACTATAAATCATTGATCAGTTGAATTTGAATCACATGGGTTAAAATTAAGAATATGAATTTCTGAACTCTTTCCAATTCAGAGCTAGCTGACATTGATAGGTGGTTATTGTATCTAGTTGTGTTAGCTGAAATGTAGGCTCAATCAAGATAGATACTTGTCATGAGGGTTTAATCAAGCACTCAAAAGAAAAGGCCAAGAAAGAAAGAGGTAGTTTGTTGAAGGAATAATCAAGTAAGAAAACGGATGATAATTGCTTCTAAATTACAACTTTAGACTCGGTTTGCAATATCAAATTCATTCCGTCTCAGCTTCAACTCAATCATCTTTTCGACTGTTTTTCGGTCTTCAAGATTCCATTTTCCTTCATCATGGATTCCTATTTCTGATTGCATTCTTTGGACTGGGGGGATGGGATGAGAAAAGGAAAGGGTGTGGATGGATGAGAATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTTCTTCTAA

mRNA sequence

ATGTTTGCATCAGTTTCATATGGTGGCTTCTATGGTTATCTATCAAACTTTTCTGGGAGCAGGAATTTGGCTAGAAAATTTGATACAAGTTATCTGCGAGGTAGTGACTTTAATATCTTGAATCAGATGAGGAAAATTGCAGTACAGCTCAAAATCTTGGGCACGCTAATTTTTCATGTTTACTTCTGGGTTGAAGTTAAATTGCATAAAAAGTCATTTATAACAGAAACCAACACTGAAGATCTAACTGTATACTACATGAATATGATGCTCAGTTCTGGGTTGAAACTCGGTTTGCAATATCAAATTCATTCCGTCTCAGCTTCAACTCAATCATCTTTTCGACTGTTTTTCGGTCTTCAAGATTCCATTTTCCTTCATCATGGATTCCTATTTCTGATTGCATTCTTTGGACTGGGGGGATGGGATGAGAAAAGGAAAGGGTGTGGATGGATGAGAATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTTCTTCTAA

Coding sequence (CDS)

ATGTTTGCATCAGTTTCATATGGTGGCTTCTATGGTTATCTATCAAACTTTTCTGGGAGCAGGAATTTGGCTAGAAAATTTGATACAAGTTATCTGCGAGGTAGTGACTTTAATATCTTGAATCAGATGAGGAAAATTGCAGTACAGCTCAAAATCTTGGGCACGCTAATTTTTCATGTTTACTTCTGGGTTGAAGTTAAATTGCATAAAAAGTCATTTATAACAGAAACCAACACTGAAGATCTAACTGTATACTACATGAATATGATGCTCAGTTCTGGGTTGAAACTCGGTTTGCAATATCAAATTCATTCCGTCTCAGCTTCAACTCAATCATCTTTTCGACTGTTTTTCGGTCTTCAAGATTCCATTTTCCTTCATCATGGATTCCTATTTCTGATTGCATTCTTTGGACTGGGGGGATGGGATGAGAAAAGGAAAGGGTGTGGATGGATGAGAATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTTCTTCTAA

Protein sequence

MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHVYFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGLQDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALFF*
Homology
[Close]
BLAST of Csa2G381880 vs. TrEMBL
Match: A0A0A0LME2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381880 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 5.8e-116
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

Query: 1   MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHV 60
           MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHV
Sbjct: 1   MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHV 60

Query: 61  YFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGL 120
           YFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGL
Sbjct: 61  YFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGL 120

Query: 121 QDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHS 180
           QDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHS
Sbjct: 121 QDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHS 180

Query: 181 LKTSCCQNRMIGSQKVDWEVISRDALFF 209
           LKTSCCQNRMIGSQKVDWEVISRDALFF
Sbjct: 181 LKTSCCQNRMIGSQKVDWEVISRDALFF 208

[Close]
BLAST of Csa2G381880 vs. NCBI nr
Match: gi|700207844|gb|KGN62963.1| (hypothetical protein Csa_2G381880 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 8.4e-116
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 

Query: 1   MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHV 60
           MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHV
Sbjct: 1   MFASVSYGGFYGYLSNFSGSRNLARKFDTSYLRGSDFNILNQMRKIAVQLKILGTLIFHV 60

Query: 61  YFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGL 120
           YFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGL
Sbjct: 61  YFWVEVKLHKKSFITETNTEDLTVYYMNMMLSSGLKLGLQYQIHSVSASTQSSFRLFFGL 120

Query: 121 QDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHS 180
           QDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHS
Sbjct: 121 QDSIFLHHGFLFLIAFFGLGGWDEKRKGCGWMRMKMSESKEVAIRNLYRSNGRLRNPLHS 180

Query: 181 LKTSCCQNRMIGSQKVDWEVISRDALFF 209
           LKTSCCQNRMIGSQKVDWEVISRDALFF
Sbjct: 181 LKTSCCQNRMIGSQKVDWEVISRDALFF 208

The following BLAST results are available for this feature:
BLAST of Csa2G381880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LME2_CUCSA5.8e-116100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G381880 PE=4 SV=1[more]
BLAST of Csa2G381880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700207844|gb|KGN62963.1|8.4e-116100.00hypothetical protein Csa_2G381880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU138498cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa2G381880.1Csa2G381880.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU138498CU138498transcribed_cluster


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa2G381880Lsi08G012140Bottle gourd (USVL1VR-Ls)culsiB140
Csa2G381880CsGy2G023400Cucumber (Gy14) v2cgybcuB057
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa2G381880Silver-seed gourdcarcuB0150
Csa2G381880Silver-seed gourdcarcuB0654
Csa2G381880Silver-seed gourdcarcuB0987
Csa2G381880Watermelon (97103) v2cuwmbB108
Csa2G381880Watermelon (97103) v2cuwmbB158
Csa2G381880Watermelon (97103) v2cuwmbB159
Csa2G381880Cucumber (Gy14) v1cgycuB100
Csa2G381880Cucumber (Gy14) v1cgycuB233
Csa2G381880Cucurbita maxima (Rimu)cmacuB013
Csa2G381880Cucurbita maxima (Rimu)cmacuB164
Csa2G381880Cucurbita maxima (Rimu)cmacuB443
Csa2G381880Cucurbita maxima (Rimu)cmacuB792
Csa2G381880Cucurbita moschata (Rifu)cmocuB004
Csa2G381880Cucurbita moschata (Rifu)cmocuB149
Csa2G381880Cucurbita moschata (Rifu)cmocuB785
Csa2G381880Melon (DHL92) v3.5.1cumeB117
Csa2G381880Melon (DHL92) v3.5.1cumeB151
Csa2G381880Watermelon (Charleston Gray)cuwcgB101
Csa2G381880Watermelon (Charleston Gray)cuwcgB141
Csa2G381880Watermelon (Charleston Gray)cuwcgB162
Csa2G381880Watermelon (Charleston Gray)cuwcgB165
Csa2G381880Watermelon (97103) v1cuwmB107
Csa2G381880Watermelon (97103) v1cuwmB118
Csa2G381880Watermelon (97103) v1cuwmB127
Csa2G381880Cucurbita pepo (Zucchini)cpecuB105
Csa2G381880Cucurbita pepo (Zucchini)cpecuB372
Csa2G381880Cucurbita pepo (Zucchini)cpecuB541
Csa2G381880Cucurbita pepo (Zucchini)cpecuB772
Csa2G381880Cucurbita pepo (Zucchini)cpecuB810
Csa2G381880Bottle gourd (USVL1VR-Ls)culsiB137
Csa2G381880Bottle gourd (USVL1VR-Ls)culsiB122
Csa2G381880Cucumber (Gy14) v2cgybcuB060
Csa2G381880Cucumber (Gy14) v2cgybcuB303
Csa2G381880Melon (DHL92) v3.6.1cumedB114