CsGy2G023400 (gene) Cucumber (Gy14) v2

Overview
NameCsGy2G023400
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
DescriptionUncharacterized protein
LocationChr2 : 31375376 .. 31376418 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGGTCATTTCACGAGATGCTCTTTTCTTCTAAGGAAATACGTCATCTCTAACTTGGATACTGACAATTAAATTTTCTTTTCTTTTTTATTTATTTTCTTTTCACAAATAAAACACACAAACAACCCCACTCTTTACCATCTCTCATAGGTAAATGATGACAATTCCACAGCCAAAAGAAGCTGTACAGTGGAAAAAAAAAATCATCATGCATAAAGCTTCATGTTGGCAGAGCCATTTTCAAACAAAATTATTGGTTCATTATCTTAGGCTTGTTCCCCCACTATGATTGTTACTGTTATATGCGATTAAAGTTAAACAATAATGATAAATTTGTCTTTACAACGAAACCCTGCACATTAGTGGTTTATCTTGAATGCCATGTTAAGTTCTTAAACCATGAGTTTGTTCAGGATCGTAATCTCAAACCCACGGTTTGTAATTTTTATTACCTTCTCCTTCCACTTTAATCAACCAAACCCTGTTTCCTACTATTTTCAAACTGGTTACATTCTAAGAAATTCTTTTAGCAAAGTAAGACTGATAAGGAAAGAGGAGCAGTAGTGGTAAAAGGTACAAAGCCGGAACAGAACGAAAAACTAAGAGAAAACACTGGAAAAGAAAGAAGACACAAATTGGATCCTATTCATGTACAACAAATGAGACATCATGGATTTTTTTTTCTTTTATGAATATCAGAATCTGAGAATAGTTTGTTCATTCAAGATTTTGTTAAAATAACAGCCTGGGGAAAGGACAGATAATTTACCATTAAAAAATAGTACAATGGACCCAACATTTTCATTCATCGCTGCTCAAACTTTGGATGCAGTAATCAAATCTCTCTCTCTCTCTCTGTCTCAGTCTCAACCTGTTTGCTCAAGCATCATCTTCTCACTATCAGCCTAA

mRNA sequence

ATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGTTAAACAATAATGATAAATTTGTCTTTACAACGAAACCCTGCACATTAGTGGTTTATCTTGAATGCCATGTTAAGTTCTTAAACCATGAGTTTGTTCAGGATCGTAATCTCAAACCCACGCAAAGTAAGACTGATAAGGAAAGAGGAGCAGTAGTGGTAAAAGGTACAAAGCCGGAACAGAACGAAAAACTAAGAGAAAACACTGGAAAAGAAAGAAGACACAAATTGGATCCTATTCATCCTGGGGAAAGGACAGATAATTTACCATTAAAAAATAGTACAATGGACCCAACATTTTCATTCATCGCTGCTCAAACTTTGGATGCAGTAATCAAATCTCTCTCTCTCTCTCTGTCTCAGTCTCAACCTGTTTGCTCAAGCATCATCTTCTCACTATCAGCCTAA

Coding sequence (CDS)

ATGAAGATGAGTGAATCCAAGGAAGTTGCAATCAGAAATCTTTACAGATCAAATGGTAGATTGAGGAACCCACTCCATTCTCTAAAGACGTCATGCTGTCAGAACAGAATGATTGGATCCCAGAAAGTTGATTGGGAGTTAAACAATAATGATAAATTTGTCTTTACAACGAAACCCTGCACATTAGTGGTTTATCTTGAATGCCATGTTAAGTTCTTAAACCATGAGTTTGTTCAGGATCGTAATCTCAAACCCACGCAAAGTAAGACTGATAAGGAAAGAGGAGCAGTAGTGGTAAAAGGTACAAAGCCGGAACAGAACGAAAAACTAAGAGAAAACACTGGAAAAGAAAGAAGACACAAATTGGATCCTATTCATCCTGGGGAAAGGACAGATAATTTACCATTAAAAAATAGTACAATGGACCCAACATTTTCATTCATCGCTGCTCAAACTTTGGATGCAGTAATCAAATCTCTCTCTCTCTCTCTGTCTCAGTCTCAACCTGTTTGCTCAAGCATCATCTTCTCACTATCAGCCTAA

Protein sequence

MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWELNNNDKFVFTTKPCTLVVYLECHVKFLNHEFVQDRNLKPTQSKTDKERGAVVVKGTKPEQNEKLRENTGKERRHKLDPIHPGERTDNLPLKNSTMDPTFSFIAAQTLDAVIKSLSLSLSQSQPVCSSIIFSLSA
Homology
[Close]
BLAST of CsGy2G023400 vs. NCBI nr
Match: KGN62963.1 (hypothetical protein Csa_2G381880 [Cucumis sativus])

HSP 1 Score: 101.7 bits (252), Expect = 2.7e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1   MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWELNNNDKFVF 56
           MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWE+ + D   F
Sbjct: 154 MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALFF 208

[Close]
BLAST of CsGy2G023400 vs. TrEMBL
Match: tr|A0A0A0LME2|A0A0A0LME2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381880 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.8e-18
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = 0 

Query: 1   MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWELNNNDKFVF 56
           MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWE+ + D   F
Sbjct: 154 MKMSESKEVAIRNLYRSNGRLRNPLHSLKTSCCQNRMIGSQKVDWEVISRDALFF 208

The following BLAST results are available for this feature:
BLAST of CsGy2G023400 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN62963.12.7e-1887.27hypothetical protein Csa_2G381880 [Cucumis sativus][more]
BLAST of CsGy2G023400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsGy2G023400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsGy2G023400 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LME2|A0A0A0LME2_CUCSA1.8e-1887.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G381880 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy2G023400.1CsGy2G023400.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..130

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsGy2G023400Csa2G381880Cucumber (Chinese Long) v2cgybcuB057
CsGy2G023400CsaV3_2G032180Cucumber (Chinese Long) v3cgybcucB065
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsGy2G023400Cucumber (Gy14) v2cgybcgybB044
CsGy2G023400Cucurbita maxima (Rimu)cgybcmaB149
CsGy2G023400Cucurbita maxima (Rimu)cgybcmaB157
CsGy2G023400Cucurbita maxima (Rimu)cgybcmaB168
CsGy2G023400Cucurbita maxima (Rimu)cgybcmaB207
CsGy2G023400Cucurbita maxima (Rimu)cgybcmaB258
CsGy2G023400Cucurbita maxima (Rimu)cgybcmaB261
CsGy2G023400Cucurbita moschata (Rifu)cgybcmoB147
CsGy2G023400Cucurbita moschata (Rifu)cgybcmoB160
CsGy2G023400Cucurbita moschata (Rifu)cgybcmoB201
CsGy2G023400Cucurbita moschata (Rifu)cgybcmoB244
CsGy2G023400Cucurbita pepo (Zucchini)cgybcpeB169
CsGy2G023400Cucurbita pepo (Zucchini)cgybcpeB174
CsGy2G023400Cucurbita pepo (Zucchini)cgybcpeB177
CsGy2G023400Cucurbita pepo (Zucchini)cgybcpeB205
CsGy2G023400Cucurbita pepo (Zucchini)cgybcpeB256
CsGy2G023400Cucurbita pepo (Zucchini)cgybcpeB260
CsGy2G023400Bottle gourd (USVL1VR-Ls)cgyblsiB109
CsGy2G023400Melon (DHL92) v3.6.1cgybmedB101
CsGy2G023400Bottle gourd (USVL1VR-Ls)cgyblsiB126
CsGy2G023400Melon (DHL92) v3.5.1cgybmeB102
CsGy2G023400Melon (DHL92) v3.5.1cgybmeB130
CsGy2G023400Watermelon (Charleston Gray)cgybwcgB099
CsGy2G023400Watermelon (Charleston Gray)cgybwcgB132
CsGy2G023400Watermelon (Charleston Gray)cgybwcgB152
CsGy2G023400Watermelon (97103) v1cgybwmB105
CsGy2G023400Watermelon (97103) v1cgybwmB121
CsGy2G023400Wild cucumber (PI 183967)cgybcpiB057
CsGy2G023400Wild cucumber (PI 183967)cgybcpiB060
CsGy2G023400Silver-seed gourdcarcgybB0148
CsGy2G023400Silver-seed gourdcarcgybB0631
CsGy2G023400Silver-seed gourdcarcgybB0960
CsGy2G023400Cucumber (Chinese Long) v3cgybcucB067
CsGy2G023400Watermelon (97103) v2cgybwmbB103
CsGy2G023400Watermelon (97103) v2cgybwmbB152
CsGy2G023400Watermelon (97103) v2cgybwmbB153
CsGy2G023400Wax gourdcgybwgoB158