Lsi08G009300 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G009300
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMitochondrial transcription termination factor family protein
Locationchr08 : 17704811 .. 17705953 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA

mRNA sequence

ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA

Coding sequence (CDS)

ATGGGGAATTTTATGCTCAAACCTCCTCTGCGTCTCTTTGCTCAAGACCTCCGGAAGTTCACAGAGAACGGCACCACAATTGGCCTCAAATTCCTCTCTTCTCTCACTCAAATCCCTCAATCAACCAACGATCGGACAGTCGATTACCTCGTCCACACCCTCGGCCTCTCCAAGGACTCAGCTCTCGCCGCTGCCAAGCGAATCCATCTCAAACCAACCGCAGATCCCGACTCCGTTCTTGCTCTCTTCAACGCCCATGGATTCACACCCTCCCACACTGCCAGCATCTTTTACAGACACCCCAGTCTCCTCCTTGCTGATCCCGACACAACACTCAAGCCCAAGTTCGAATTTCTCTCTCAAAACGGTATATCTGGTAATGTTCTCGTCGACGTGATCTCTAGGGATCCATCAATTCTCAGAAGGAGCTTGGACAAGCAGATTGTTCCATGTATTGATTTTCTCAGAAATTTCTTTGGTTCTACTGATGGTATTGTCTCGCTCTTTTCTACTAGACGTGGGACTTGGGTTTTGCGCCAGTTTTCCGAATCTGTGGCTCCCAATATAGAAGTACTGAGAGCTAATGGTGTGCCCGATTCAAACATTGCTAAAATGATTTTGTTGCGCCCGAGGACACTCTCCAGGGATGCGGAAGAGTTTATTGACATTGTCAAGAAGACAAAGGAAACGGGGTTTAATCCTTCGAGCTTGATGTTTATTCATGGGCTGTGTACACTTTCAGGGATGAGAAAGGACAAATGGTTATCGAAACTGCATATTTTTAAAAGTTTTGGATGGTCAGAGGAGCAGTTTCAATCTTTATTTCTCAAGCAGCCCATGTTTATGAATTCGTCTGGGGAGCAAATTAAGAGGGCATTGGATTTCTTTATGAACAAATTAGACTGGACACCGGAAGAAATTTCCAAGTACCCAACTGTGCTCATTCTTAGTTTTGAAAAGAGGATAATGCCGAGGTCGTCTATCCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACGAGTGTTGGCAGAGCATTTTTGATTTGCGAGGATGAGTTCTTGGTCAAGTTTGTGATGCAGTATCTTTCAGAAGATCCCCATCTATTAAAGATGTACCAGGAGAAGATGGCAATATTATGA

Protein sequence

MGNFMLKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFVMQYLSEDPHLLKMYQEKMAIL
Homology
[Close]
BLAST of Lsi08G009300 vs. Swiss-Prot
Match: MTEF1_ARATH (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 58.5 bits (140), Expect = 1.8e-07
Identity = 55/212 (25.94%), Postives = 83/212 (39.15%), Query Frame = 1 

Query: 6   LKPPLRLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKDSALAAA 65
           L PP    A  +R F    +  G+ F   L  +               L +    AL   
Sbjct: 8   LFPPPCFSAVRIRCFAGETSDTGILFREKLIYLQD-------------LNVDPHKALRVN 67

Query: 66  KRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQN-GI 125
             +   P +   SV  L ++ G +      I    P LL +DP++ + P   FLS    I
Sbjct: 68  PSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLLTSDPESEILPVLRFLSNEISI 127

Query: 126 SGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNF-FGSTDGIVSLFSTRRGTWVLRQFSE 185
           S   +   ISR P +L  S+D Q+ P + FL+   F   D I S    R    ++     
Sbjct: 128 SEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGRDTITS----RNTVLLVSNVER 187

Query: 186 SVAPNIEVLRAN-GVPDSNIAKMILLRPRTLS 215
           ++ P IE L    G     +AKM++  P  L+
Sbjct: 188 TLIPKIEYLEEGLGFTREEVAKMVVRSPALLT 202

[Close]
BLAST of Lsi08G009300 vs. Swiss-Prot
Match: MTEF6_ARATH (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 9.8e-06
Identity = 37/148 (25.00%), Postives = 68/148 (45.95%), Query Frame = 1 

Query: 78  SVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQN-GISGNVLVDVISRD 137
           S++  F   GF       +  +   L  A  D   +  +++LS   GI    L  ++SR 
Sbjct: 8   SIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASE-NWDYLSNIVGIQERKLPYIVSRC 67

Query: 138 PSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANG 197
           P IL   LD++++P ++ L +  G     V+   T+    +     E + P +   +A G
Sbjct: 68  PKILTLRLDERLIPMVECLSSL-GRNPREVASAITKFPPILSHSVEEKLCPLLAFFQALG 127

Query: 198 VPDSNIAKMILLRPRTLSRDAEEFIDIV 225
           VP++ + KMIL  PR +S   +  + ++
Sbjct: 128 VPETQLGKMILFNPRLISYSIDTKLTVI 153

[Close]
BLAST of Lsi08G009300 vs. TrEMBL
Match: A0A0A0LQN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1)

HSP 1 Score: 565.5 bits (1456), Expect = 5.0e-158
Identity = 287/380 (75.53%), Postives = 320/380 (84.21%), Query Frame = 1 

Query: 1   MGNFMLKPPL-RLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKD 60
           M NF+ KP L RL+AQDLR F  N TTIGL FLSSL+Q PQSTN RT+DYL+HT+GLSKD
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFL 120
           SALAAAK+IHLKP++DPDSVLALFNA+GFTPS TA+IF R P LLLADPD TLKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLR 180
           S+NGISGN LVD+I R+P ILRRSLDK+IVPC DFL NFFGSTD IVSLF T   T VL 
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 QFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMF 240
            FSE +APNIEVLRANGVPDS+IAK+   RP  LSRD + F DIV+KTKE GFNPSSLMF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 IHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 300
           I+GLC +S M KD+WLSKLHIF+S+GWS+EQFQS+FLKQP FMN S E +KRALDFFMNK
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFV 360
            DWT EEI +YP VLILSFEKR+MPRSSILQHLISKG IK+ S+G A  I E EFL KFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MQYLSEDPHLLKMYQEKMAI 380
           MQYLSEDPHLL+MYQEK  I
Sbjct: 361 MQYLSEDPHLLEMYQEKKKI 380

[Close]
BLAST of Lsi08G009300 vs. TrEMBL
Match: A0A0A0LK19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1)

HSP 1 Score: 560.8 bits (1444), Expect = 1.2e-156
Identity = 290/377 (76.92%), Postives = 319/377 (84.62%), Query Frame = 1 

Query: 1   MGNFMLKPPL-RLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKD 60
           M NF+LKP L RLFAQDLR FT N TTIGLKFLSSL+Q PQSTND TVDYL+HT+GLSK 
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFL 120
           SALAAAK+I LKPTA PDSVLALFNA+GFTPSH ASIF R PSLLLA+PDTTLKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLR 180
           S+NGISGN L DVI RDP IL RSLDKQIVPCIDFL NFFGSTD IVSLFST   T VL 
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 QFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMF 240
            FSE VAPNIEVLRANGV DSNIAK++ +RP  LSRD E F DIV+KT+E GFNPSSLMF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 IHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 300
           IHGLCTLS M KDKWLSKLH+F+SFGWS+EQFQS+FLK+P  MNSS E +KRALDFF+ K
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFV 360
            DWT E+ISKY  +L  S EKR++PRSSILQHLISKGFIK+ SVG A    E +FL KFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MQYLSEDPHLLKMYQEK 377
           M+YLSEDP+LL+MYQEK
Sbjct: 361 MKYLSEDPNLLEMYQEK 377

[Close]
BLAST of Lsi08G009300 vs. TrEMBL
Match: M5XIM3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018608mg PE=4 SV=1)

HSP 1 Score: 354.0 bits (907), Expect = 2.3e-94
Identity = 181/346 (52.31%), Postives = 239/346 (69.08%), Query Frame = 1 

Query: 34  SLTQIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHT 93
           SLT +         DYL +TL  + +SA   +K+IH +P  +P  V +LF  +GFTP+H 
Sbjct: 17  SLTTLSICDYPALTDYLTNTLAFTPESASQVSKKIHGRPPNNPYPVHSLFEHYGFTPTHI 76

Query: 94  ASIFYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCID 153
           A I    PS L A+P+ TLKPK +FL+QNGI G  LV  I+ +P IL RSL+KQI PCI 
Sbjct: 77  AKIITICPSFLWANPEKTLKPKLDFLAQNGIYGQDLVITITNNPRILERSLNKQIAPCIG 136

Query: 154 FLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTL 213
           FL++F GS   ++S FS +RGT V+ +FS+S+  N E LR +GVP SNI KMI  +P   
Sbjct: 137 FLKSFLGSASALLSHFSVKRGTAVVLRFSDSMGANAETLRQHGVPHSNIMKMIACQPGIF 196

Query: 214 SRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQS 273
           SRD E F  IV++ +E GFNP S+MFI+G+CTL  M KDKW+SK  + KSFGWSE +FQ+
Sbjct: 197 SRDVEVFSKIVREVEELGFNPLSMMFIYGVCTLFSMTKDKWVSKFEVLKSFGWSEAEFQA 256

Query: 274 LFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLI 333
           LFLKQP+ M SS E++KRALDFFMNK+ W   +I KYP +L LSFEKR++PR SILQ LI
Sbjct: 257 LFLKQPLVMRSSEERLKRALDFFMNKMGWGTSDILKYPVLLCLSFEKRVLPRWSILQVLI 316

Query: 334 SKGFIKKT--SVGRAFLICEDEFLVKFVMQYLSEDPHLLKMYQEKM 378
           +KG I K+  +  +AF+  ED+F+ +FV  Y    P LL+MYQ+K+
Sbjct: 317 AKGVITKSKKTTAKAFMQTEDKFVSEFVKGYEEHAPELLEMYQKKL 362

[Close]
BLAST of Lsi08G009300 vs. TrEMBL
Match: A0A059AB47_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 8.7e-86
Identity = 155/341 (45.45%), Postives = 235/341 (68.91%), Query Frame = 1 

Query: 39  PQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFY 98
           P++  DR    L    G   +SA A A  +  K     DS +A+F  HGF+PS  A++  
Sbjct: 57  PRAVEDR----LARAHGFPPESARAVAAAVDPKLAHKLDSFVAVFTGHGFSPSEVATVLL 116

Query: 99  RHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNF 158
           R+P  L ++P   LKPK +FL+ NG++G  LV V++ DP +LRRSL+ Q+ PC D L  F
Sbjct: 117 RYPRCLRSNPVKNLKPKLDFLAGNGVAGETLVHVLTNDPYLLRRSLESQLAPCFDCLVKF 176

Query: 159 FGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAE 218
           FG+    +SL   +RGTWVL +F++S+  NI+ LR  GVPDS+I K++ +RPRTLSRDA 
Sbjct: 177 FGNRRDAISLLMVKRGTWVLHKFTDSMELNIDKLRQVGVPDSSITKLMTVRPRTLSRDAT 236

Query: 219 EFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQ 278
           EF +IV + +  G +PSSLMF++G+ TL+GM++ KW +K+ +FK FGWS+EQF+++F+KQ
Sbjct: 237 EFSEIVDEVRRMGLHPSSLMFVYGVITLAGMKRPKWEAKIAVFKKFGWSDEQFKAIFVKQ 296

Query: 279 PMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFI 338
           P  MN S +++++ L FFM++L WT +E++  P++ + SF+KRI+PR SIL  L+S+G +
Sbjct: 297 PQIMNPSEKRMEQFLKFFMSELGWTADELTNCPSIFMASFKKRILPRMSILLFLLSEGLV 356

Query: 339 KKTSVGRAFLICEDEFLVKFVMQYLSEDPHLLKMYQEKMAI 380
           K+ S+    L+ ED+FL KFVM+ + + P LL+MY++K  +
Sbjct: 357 KRQSLLGKLLMSEDKFLSKFVMENVGKAPQLLQMYEDKQVL 393

[Close]
BLAST of Lsi08G009300 vs. TrEMBL
Match: A0A059AA44_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 8.7e-86
Identity = 155/341 (45.45%), Postives = 235/341 (68.91%), Query Frame = 1 

Query: 39  PQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFY 98
           P++  DR    L    G   +SA A A  +  K     DS +A+F  HGF+PS  A++  
Sbjct: 57  PRAVEDR----LARAHGFPPESARAVAAAVDPKLAHKLDSFVAVFTGHGFSPSEVATVLL 116

Query: 99  RHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNF 158
           R+P  L ++P   LKPK +FL+ NG++G  LV V++ DP +LRRSL+ Q+ PC D L  F
Sbjct: 117 RYPRCLRSNPVKNLKPKLDFLAGNGVAGETLVHVLTNDPYLLRRSLESQLAPCFDCLVKF 176

Query: 159 FGSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAE 218
           FG+    +SL   +RGTWVL +F++S+  NI+ LR  GVPDS+I K++ +RPRTLSRDA 
Sbjct: 177 FGNRRDAISLLMVKRGTWVLHKFTDSMELNIDKLRQVGVPDSSITKLMTVRPRTLSRDAT 236

Query: 219 EFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQ 278
           EF +IV + +  G +PSSLMF++G+ TL+GM++ KW +K+ +FK FGWS+EQF+++F+KQ
Sbjct: 237 EFSEIVDEVRRMGLHPSSLMFVYGVITLAGMKRPKWEAKIAVFKKFGWSDEQFKAIFVKQ 296

Query: 279 PMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFI 338
           P  MN S +++++ L FFM++L WT +E++  P++ + SF+KRI+PR SIL  L+S+G +
Sbjct: 297 PQIMNPSEKRMEQFLKFFMSELGWTADELTNCPSIFMASFKKRILPRMSILLFLLSEGLV 356

Query: 339 KKTSVGRAFLICEDEFLVKFVMQYLSEDPHLLKMYQEKMAI 380
           K+ S+    L+ ED+FL KFVM+ + + P LL+MY++K  +
Sbjct: 357 KRQSLLGKLLMSEDKFLSKFVMENVGKAPQLLQMYEDKQVL 393

[Close]
BLAST of Lsi08G009300 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 210.7 bits (535), Expect = 1.6e-54
Identity = 116/331 (35.05%), Postives = 188/331 (56.80%), Query Frame = 1 

Query: 46  TVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLL 105
           T++YL+ + GLS DSA  A++++ L     P++VL L   HGFT +  +S+  + P LLL
Sbjct: 71  TLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLL 130

Query: 106 ADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGI 165
           A+ ++ L PK  F    G+S ++L   ++ DP+IL RSL  Q++P  +FL++   S + I
Sbjct: 131 ANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKI 190

Query: 166 VSLFSTRRGTWV-LRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIV 225
           V+  + RR TWV L   ++++ PNI  +   GVP+  I  ++   P  + +   EF  I 
Sbjct: 191 VA--ALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIA 250

Query: 226 KKTKETGFNPSSLMFIHGLCTLSGM-RKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMN 285
           K+ +E GFNP    F+  +  LSG   K  W     +++ +GWSE+     F K P  M 
Sbjct: 251 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMM 310

Query: 286 SSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKT-S 345
            S  +I R +++F+N+++  P  I++ P VL  S EKRI+PR S+ + L+S G +K+  S
Sbjct: 311 LSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWS 370

Query: 346 VGRAFLICEDEFLVKFVMQYLSEDPHLLKMY 374
           +    +  E  FL K V++Y  E P L+ +Y
Sbjct: 371 LTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]
BLAST of Lsi08G009300 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 184.5 bits (467), Expect = 1.2e-46
Identity = 108/368 (29.35%), Postives = 182/368 (49.46%), Query Frame = 1 

Query: 17  LRKFTENGTTIG-LKFLSSLTQIPQSTNDR--------TVDYLVHTLGLSKDSALAAAKR 76
           +R+    G  +G ++ L S++Q+     ++        TV YLV + GLS +SA + ++ 
Sbjct: 20  VRRIVNLGFLVGRIRTLCSVSQVKSENLEKQKPCLESFTVSYLVDSCGLSLESAKSNSRF 79

Query: 77  IHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFLSQNGISGN 136
           + L  +  PDSVLALF  HGFT     S+    P +L   P+  + PK  F S  G S +
Sbjct: 80  VKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTS 139

Query: 137 VLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLRQFSESVAP 196
               +IS  P +L  SL K+++PC D L++     + +V         + L+  +  V+ 
Sbjct: 140 DTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESVVKCLKRGIRCFSLK-ITHCVSL 199

Query: 197 NIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLS 256
            + + R  GVPD +I  ++   P T       F +++ +    GF+P    F+H +    
Sbjct: 200 RVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFD 259

Query: 257 GMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEI 316
              +     K  +F+ FGWS+E F +  ++ P  +  S E+I   L++ +N +     +I
Sbjct: 260 CTSESAMERKFKLFQCFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDI 319

Query: 317 SKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVG--RAFLICEDEFLVKFVMQYLSE 374
              P VL LS EKRI PR+ ++  L+SKG +KK  +       +   EF+ KFV++Y  E
Sbjct: 320 VARPVVLSLSMEKRIKPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDE 379

[Close]
BLAST of Lsi08G009300 vs. TAIR10
Match: AT1G61970.1 (AT1G61970.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-30
Identity = 98/383 (25.59%), Postives = 183/383 (47.78%), Query Frame = 1 

Query: 37  QIPQSTNDRTVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASI 96
           ++ +  N+ TV YLV +LGL+   A + ++++  +   +PDSVL L  +HGFT S  ++I
Sbjct: 45  RVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFEDKNNPDSVLNLLTSHGFTGSQISTI 104

Query: 97  FYRHPSLLLADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLR 156
              +P LL+AD + +L PK +FL   G S + + +++S  P IL +   K I    DF++
Sbjct: 105 IRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILGKKGHKTISVYYDFIK 164

Query: 157 NFF--GSTDGIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLS 216
           +     S+       S  +G        E+   N+ VLR  G+P   +  +++   + + 
Sbjct: 165 DTLLEKSSKNEKLCHSLPQGN------LENKIRNVSVLRELGMPHKLLFSLLISDSQPVC 224

Query: 217 RDAEEFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSL 276
              E+F + +KK  E GF+P++  F+  L  +  M +     K+H++KS G+      S 
Sbjct: 225 -GKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEEKVHLYKSLGFDVGDVWSS 284

Query: 277 FLKQPMFMNSSGEQIKRALDFFMNKLDWTPEEISKY------------------------ 336
           F K P+ +  S +++  +++ F+  L ++ +E +K                         
Sbjct: 285 FKKWPISLRVSEKKMLDSIETFLG-LGFSRDEFAKMVKHFPPCIGLSTETVKKKTEFLVK 344

Query: 337 ------------PTVLILSFEKRIMPRSSILQHLISKGFIKK--TSVGRAFLICEDEFLV 380
                       P V   S EKRI+PR ++++ L+SKG ++    S+    +  +  FL 
Sbjct: 345 KMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNELPSISCVLMCTKQVFLN 404

[Close]
BLAST of Lsi08G009300 vs. TAIR10
Match: AT1G61990.1 (AT1G61990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 129.8 bits (325), Expect = 3.6e-30
Identity = 99/368 (26.90%), Postives = 180/368 (48.91%), Query Frame = 1 

Query: 46  TVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLL 105
           TV YLV +LGLSK  A + ++++  +   +PDSVL+LF ++GFT S  ++I   +P LL+
Sbjct: 54  TVSYLVDSLGLSKKLAESISRKVSFEDKVNPDSVLSLFRSYGFTDSQISTIITDYPLLLV 113

Query: 106 ADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGI 165
           AD    L  K + L   G S + + +++S  P IL +   K I    D +++        
Sbjct: 114 ADAKKALGRKLQILQSRGASSSEITEIVSTVPRILGK---KSITVYYDAVKDI------- 173

Query: 166 VSLFSTRRGTWVLRQFSE-SVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIV 225
             + +    ++ L Q S+ +   N+  LR  G+P   +  +++ + + +    E F   +
Sbjct: 174 --IVADTSSSYELPQGSQGNKIRNVSALRELGMPSRLLLPLLVSKSQPVC-GKENFDASL 233

Query: 226 KKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNS 285
           KK  E GF+P++  F+  L  L  M +     K+ +F+S G++ +    +F K P  +  
Sbjct: 234 KKVVEMGFDPTTTKFVLALRMLYQMSEKTIEEKVVVFRSLGFTVDDVWEIFKKTPSVLKV 293

Query: 286 SGEQIKRALDFFMNK-----------------LDWTPEEISK------------------ 345
           S ++I ++ + F++                  ++++ E + K                  
Sbjct: 294 SKKKILKSAETFLDLGYSRAEFLMMVKRYPPCIEYSVESVKKKNEFLVKKMKWPRNALVL 353

Query: 346 YPTVLILSFEKRIMPRSSILQHLISKGFIKKTS---VGRAFLICEDE-FLVKFVMQYLSE 374
           +P V   S EKRI+PR +IL+ L+SKG ++K S      + L C DE FL ++VM++   
Sbjct: 354 HPQVFGYSMEKRIIPRCNILEALLSKGLLRKGSELPAVSSVLSCTDEGFLDRYVMKHNEL 408

[Close]
BLAST of Lsi08G009300 vs. TAIR10
Match: AT1G61980.1 (AT1G61980.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 122.1 bits (305), Expect = 7.4e-28
Identity = 88/284 (30.99%), Postives = 142/284 (50.00%), Query Frame = 1 

Query: 46  TVDYLVHTLGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLL 105
           TV YLV +LGL K  A + ++++  +   +PDSVL L  +HGFT S  ++I   +P LL+
Sbjct: 54  TVSYLVDSLGLPKKLAESVSRKVSFEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLV 113

Query: 106 ADPDTTLKPKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFF--GSTD 165
           AD + +L PK +FL   G S + L +++S  P IL +   K I    DF++      S+ 
Sbjct: 114 ADAEKSLAPKLQFLQSRGASSSELTEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSK 173

Query: 166 GIVSLFSTRRGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDA-----E 225
              S     +G        E+   N+ VLR  G+P        LL P  +S D      E
Sbjct: 174 SEKSCQPFPQGN------LENKIRNLSVLRELGMPHK------LLFPLLISCDVPVFGKE 233

Query: 226 EFIDIVKKTKETGFNPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQ 285
           +F + +KK  E GF+PS+  F+  LC +  +       K++ +K  G+  E   ++F + 
Sbjct: 234 KFEESLKKVVEMGFDPSTSKFVEALCVVQRLSDKNIEDKVNAYKRLGFDVEYVWTVFKRW 293

Query: 286 PMFMNSSGEQIKRALDFFMNKLDWTPEEISKYPTVLILSFEKRI 323
           P F+  S ++I   ++ F+  L ++ +E S    VLI  F + I
Sbjct: 294 PNFLTHSEKKILNTIETFLG-LGFSRDEFS----VLIKRFPQGI 320

[Close]
BLAST of Lsi08G009300 vs. NCBI nr
Match: gi|449442098|ref|XP_004138819.1| (PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus])

HSP 1 Score: 565.5 bits (1456), Expect = 7.2e-158
Identity = 287/380 (75.53%), Postives = 320/380 (84.21%), Query Frame = 1 

Query: 1   MGNFMLKPPL-RLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKD 60
           M NF+ KP L RL+AQDLR F  N TTIGL FLSSL+Q PQSTN RT+DYL+HT+GLSKD
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFL 120
           SALAAAK+IHLKP++DPDSVLALFNA+GFTPS TA+IF R P LLLADPD TLKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLR 180
           S+NGISGN LVD+I R+P ILRRSLDK+IVPC DFL NFFGSTD IVSLF T   T VL 
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 QFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMF 240
            FSE +APNIEVLRANGVPDS+IAK+   RP  LSRD + F DIV+KTKE GFNPSSLMF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 IHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 300
           I+GLC +S M KD+WLSKLHIF+S+GWS+EQFQS+FLKQP FMN S E +KRALDFFMNK
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFV 360
            DWT EEI +YP VLILSFEKR+MPRSSILQHLISKG IK+ S+G A  I E EFL KFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MQYLSEDPHLLKMYQEKMAI 380
           MQYLSEDPHLL+MYQEK  I
Sbjct: 361 MQYLSEDPHLLEMYQEKKKI 380

[Close]
BLAST of Lsi08G009300 vs. NCBI nr
Match: gi|659089103|ref|XP_008445328.1| (PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo])

HSP 1 Score: 563.9 bits (1452), Expect = 2.1e-157
Identity = 287/383 (74.93%), Postives = 319/383 (83.29%), Query Frame = 1 

Query: 1   MGNFMLKPPL-RLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKD 60
           M N +LKP L R FAQDLR FT N TTIGLKFLSSL+Q PQSTNDRT DYLVHT+GL KD
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFL 120
           SALAAAK+I LKPTADPDSVLALFNA+GFTPSH ASIF +   LLLADPDTTLKPK EFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLR 180
           S+NGISGN+L DVI RDP IL RSLDKQIVPCIDFL NFFGSTDG+V LFS   GT VL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 QFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMF 240
            FSES+APN+EVLRANGVPDSNIAKM+ LRP  LS+D E FIDIV+KTKE G NPSSLMF
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMF 240

Query: 241 IHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 300
           IHG+C ++ M KDKWLSK+H+FKSFGWS+EQFQS+FLKQP FM  S E +KR LDFFMNK
Sbjct: 241 IHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFV 360
            DWT E++SKYP +L LS EKR++PRSSI+Q LISKGFIK+ S G+A    E  FL KFV
Sbjct: 301 WDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFV 360

Query: 361 MQYLSEDPHLLKMYQE---KMAI 380
           M+YLSEDPHLL+MYQE   KMAI
Sbjct: 361 MKYLSEDPHLLEMYQETKKKMAI 383

[Close]
BLAST of Lsi08G009300 vs. NCBI nr
Match: gi|778670382|ref|XP_004143080.2| (PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus])

HSP 1 Score: 560.8 bits (1444), Expect = 1.8e-156
Identity = 290/377 (76.92%), Postives = 319/377 (84.62%), Query Frame = 1 

Query: 1   MGNFMLKPPL-RLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKD 60
           M NF+LKP L RLFAQDLR FT N TTIGLKFLSSL+Q PQSTND TVDYL+HT+GLSK 
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFL 120
           SALAAAK+I LKPTA PDSVLALFNA+GFTPSH ASIF R PSLLLA+PDTTLKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLR 180
           S+NGISGN L DVI RDP IL RSLDKQIVPCIDFL NFFGSTD IVSLFST   T VL 
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 QFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMF 240
            FSE VAPNIEVLRANGV DSNIAK++ +RP  LSRD E F DIV+KT+E GFNPSSLMF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 IHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 300
           IHGLCTLS M KDKWLSKLH+F+SFGWS+EQFQS+FLK+P  MNSS E +KRALDFF+ K
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFV 360
            DWT E+ISKY  +L  S EKR++PRSSILQHLISKGFIK+ SVG A    E +FL KFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MQYLSEDPHLLKMYQEK 377
           M+YLSEDP+LL+MYQEK
Sbjct: 361 MKYLSEDPNLLEMYQEK 377

[Close]
BLAST of Lsi08G009300 vs. NCBI nr
Match: gi|659068543|ref|XP_008444984.1| (PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo])

HSP 1 Score: 558.9 bits (1439), Expect = 6.7e-156
Identity = 284/377 (75.33%), Postives = 316/377 (83.82%), Query Frame = 1 

Query: 1   MGNFMLKPPL-RLFAQDLRKFTENGTTIGLKFLSSLTQIPQSTNDRTVDYLVHTLGLSKD 60
           M N +LKP L RLFAQDL+ FT N TTIGLK LSSL+Q PQSTNDRT+DYLVHT+GL KD
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLKPKFEFL 120
           SALAAAK+  LKPTADPDSVLALFNA+GFTPSH ASIF +   LLLA+PDTTLKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDGIVSLFSTRRGTWVLR 180
           S+NGISGN+LV+VI RDP IL RSLDKQIVPCIDFLRNFFGSTDG+V LFS   GT VL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 QFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGFNPSSLMF 240
            FSES+APNIEVLRANGV DSNIAKM+ LRP  LSRD E FIDIV+K KE G NPSSLMF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 IHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRALDFFMNK 300
           IHGLC +S M KDKWLSK+H+FKSFGWS+EQFQS+FLKQP FM  S E +KR LDFFMNK
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 LDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICEDEFLVKFV 360
            DWT E+ISKY  +L LS EKR++PRSSI++HLISKGFIK+ S G A    E EFL KFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MQYLSEDPHLLKMYQEK 377
           M+YLS+DPHLL+MYQEK
Sbjct: 361 MKYLSKDPHLLEMYQEK 377

[Close]
BLAST of Lsi08G009300 vs. NCBI nr
Match: gi|1009119129|ref|XP_015876211.1| (PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba])

HSP 1 Score: 416.8 bits (1070), Expect = 4.1e-113
Identity = 214/388 (55.15%), Postives = 279/388 (71.91%), Query Frame = 1 

Query: 1   MGNFMLKPPLRL-----FAQDLRKFTEN--GTTIGLKFLSSLTQIPQSTNDRTVDYLVHT 60
           M  F+ K PLRL     F         N  G  + LK LS+L+    S++D TVDY +++
Sbjct: 1   MFRFLSKIPLRLPQVAIFIIPTSNANSNAIGQQLFLKSLSTLSPPSSSSSDSTVDYFINS 60

Query: 61  LGLSKDSALAAAKRIHLKPTADPDSVLALFNAHGFTPSHTASIFYRHPSLLLADPDTTLK 120
           LGLS DSAL AAK I  +PTA  DSVL LF  +GF+ +  A IF R PSLLL+DP   LK
Sbjct: 61  LGLSPDSALTAAKLIRRQPTAKSDSVLELFRHYGFSSAQIADIFSRFPSLLLSDPQKNLK 120

Query: 121 PKFEFLSQNGISGNVLVDVISRDPSILRRSLDKQIVPCIDFLRNFFGSTDG-IVSLFSTR 180
           PK EFLS+NGISG  L+ ++S DP+IL RSL+KQI PCI FL+ FF +    IVSL S +
Sbjct: 121 PKLEFLSKNGISGQALLSIVSTDPTILLRSLNKQIEPCIGFLKTFFKNNKAEIVSLLSVK 180

Query: 181 RGTWVLRQFSESVAPNIEVLRANGVPDSNIAKMILLRPRTLSRDAEEFIDIVKKTKETGF 240
           RGTWV+ +FSE++APNIE LR++GV D+ I KMI++RP  LSR A++F + V+  KE GF
Sbjct: 181 RGTWVIHKFSETMAPNIETLRSHGVSDACIKKMIIVRPAALSRFADDFSEFVRVVKEMGF 240

Query: 241 NPSSLMFIHGLCTLSGMRKDKWLSKLHIFKSFGWSEEQFQSLFLKQPMFMNSSGEQIKRA 300
           +PSS+MFIHG+CT SGM+KDKW+SK+ +FK FGWSEE+ +SL +KQP  MNSS E++ ++
Sbjct: 241 DPSSVMFIHGVCTFSGMKKDKWVSKMEVFKRFGWSEEEVRSLVVKQPKVMNSSSERLSKS 300

Query: 301 LDFFMNKLDWTPEEISKYPTVLILSFEKRIMPRSSILQHLISKGFIKKTSVGRAFLICED 360
           LDFFMNKL W+ ++ISKYPTVL+LSFE+R+ PRS IL+ LISKG I K  +G  F++ ED
Sbjct: 301 LDFFMNKLGWSVDDISKYPTVLLLSFERRVFPRSIILKFLISKGHIDKKKMGSGFILPED 360

Query: 361 EFLVKFVMQYLSEDPHLLKMYQEKMAIL 381
           +FL  FVM+Y  + P LL MYQ K  ++
Sbjct: 361 KFLKNFVMEYEEKLPQLLDMYQSKKQVI 388

The following BLAST results are available for this feature:
BLAST of Lsi08G009300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MTEF1_ARATH1.8e-0725.94Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana GN... [more]
MTEF6_ARATH9.8e-0625.00Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop... [more]
BLAST of Lsi08G009300 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQN0_CUCSA5.0e-15875.53Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1[more]
A0A0A0LK19_CUCSA1.2e-15676.92Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1[more]
M5XIM3_PRUPE2.3e-9452.31Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018608mg PE=4 S... [more]
A0A059AB47_EUCGR8.7e-8645.45Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1[more]
A0A059AA44_EUCGR8.7e-8645.45Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1[more]
BLAST of Lsi08G009300 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.11.6e-5435.05 Mitochondrial transcription termination factor family protein[more]
AT1G21150.11.2e-4629.35 Mitochondrial transcription termination factor family protein[more]
AT1G61970.11.2e-3025.59 Mitochondrial transcription termination factor family protein[more]
AT1G61990.13.6e-3026.90 Mitochondrial transcription termination factor family protein[more]
AT1G61980.17.4e-2830.99 Mitochondrial transcription termination factor family protein[more]
BLAST of Lsi08G009300 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442098|ref|XP_004138819.1|7.2e-15875.53PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus][more]
gi|659089103|ref|XP_008445328.1|2.1e-15774.93PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo][more]
gi|778670382|ref|XP_004143080.2|1.8e-15676.92PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus][more]
gi|659068543|ref|XP_008444984.1|6.7e-15675.33PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo][more]
gi|1009119129|ref|XP_015876211.1|4.1e-11355.15PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G009300.1Lsi08G009300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 251..354
score: 8.2E-16coord: 80..237
score: 6.9
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 130..162
score: 0.07coord: 203..233
score: 1100.0coord: 237..267
score: 1100.0coord: 272..303
score: 59.0coord: 94..125
score: 0.0049coord: 304..338
score:
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 46..379
score: 2.1E
NoneNo IPR availablePANTHERPTHR13068:SF28MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN-RELATEDcoord: 46..379
score: 2.1E