CmaCh12G001280 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh12G001280
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionMitochondrial transcription termination factor family protein, putative
LocationCma_Chr12 : 527480 .. 528622 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGAACTCCAGAAGTTTGCAGGGAACGACCCCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTAAAATCTCTGAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGATTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAATCTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGTATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGATTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTCTTTGGCTCTACTGATGGTATAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCCGATTCGAACATCGCGAAGATTTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTATTTAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGAATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATCTACTTTATCTTAGTGTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGGGCATTTTTGATGAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGACCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAA

mRNA sequence

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGAACTCCAGAAGTTTGCAGGGAACGACCCCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTAAAATCTCTGAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGATTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAATCTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGTATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGATTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTCTTTGGCTCTACTGATGGTATAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCCGATTCGAACATCGCGAAGATTTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTATTTAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGAATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATCTACTTTATCTTAGTGTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGGGCATTTTTGATGAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGACCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAA

Coding sequence (CDS)

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGAACTCCAGAAGTTTGCAGGGAACGACCCCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTAAAATCTCTGAATCAACCAACAATCGGACGGTCGACTACCTTGTTCATACCCTTGGATTCTCCAAGGATTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAATCTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCTGATACTGCCAGTATCTTTTGCAGACATCCTAATCTCCTCCTTGCCGATCCGGACACAATACTCAAACCTAAGATTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCGACGTAATCTCTAGGGATCCGTCAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAAATTTCTTTGGCTCTACTGATGGTATAGTCTCGCTCTTTTCTGCTAGACGTGGGACTTGGGTTTTGCGAAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCCGATTCGAACATCGCGAAGATTTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGCCCGATGTTTACTTATGGGCTGTGTACGTATTTAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAGAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGATTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGAATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAAGTACCCAAATCTACTTTATCTTAGTGTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATATCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGGGCATTTTTGATGAGCGAGGATAAGTTTTTGGTCAAGTTTGTGATGCAGTATCTTTCTGAGGACCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAA

Protein sequence

MTNFLFKVPLRLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFVMQYLSEDPHLLEMYQKKMAVL
Homology
[Close]
BLAST of CmaCh12G001280 vs. Swiss-Prot
Match: MTEF8_ARATH (Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana GN=MTERF8 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-06
Identity = 48/203 (23.65%), Postives = 92/203 (45.32%), Query Frame = 1 

Query: 130 VDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRKFSESVAPNI 189
           + +I+R P IL   L  Q++P +DF+RN  G  D        RR   +L    E +   +
Sbjct: 232 IGIIARRPVILNSDLDSQLIPRVDFIRNLSGEDDFATGTV-LRRLPAILSYSVEHMNGQV 291

Query: 190 ELLRA-NGVPDSNIAKIFWVRPRTLARDAE-EFSDIVEKTKEAGF-NPSSPMFTYGLCTY 249
           E L++  G+    + KI  V P  ++   E +    +E  KE GF +P    F       
Sbjct: 292 EFLKSFAGLTSEQVFKIVHVFPNVISTSKERKLRPRIEFLKECGFDSPGMFKFLSKAPLI 351

Query: 250 LGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKLDWTHEE 309
           L + ++    KL      G+ + + + L      +  +S + ++R +  +++    + E+
Sbjct: 352 LALSENNLSHKLGFLVKIGY-KHRTKELAFAMGAVTRTSSDNMQRVIGLYLS-YGLSFED 411

Query: 310 I----SKYPNLL---YLSVEKRV 323
           I    +K+P +L   Y S+E+++
Sbjct: 412 ILAMSTKHPQVLQYNYTSLEEKL 431

[Close]
BLAST of CmaCh12G001280 vs. TrEMBL
Match: A0A0A0LQN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1)

HSP 1 Score: 516.5 bits (1329), Expect = 2.7e-143
Identity = 262/380 (68.95%), Postives = 304/380 (80.00%), Query Frame = 1 

Query: 1   MTNFLFKVPL-RLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKD 60
           M NFL K  L RL+AQ+L+ FA N  TI   FLSSLS+  +STN+RT+DYL+HT+G SKD
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFL 120
           SALAAAK+IHLK +++PDSV+ALF AYGFT S TA+IFCR P LLLADPD  LKPK EFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLR 180
           S+NG +G+ LVD+I R+P ILRRSL K+IVPC DFL NFFGSTD IVSLF     T VL 
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240
            FSE +APNIE+LRANGVPDS+IAK+FW RP  L+RD + F+DIVEKTKE GFNPSS MF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 TYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNK 300
             GLC    M KD+WLSKLHIF S+GWS+EQFQS+FLKQP  MN SEE +KRAL+FFMNK
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 LDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFV 360
            DWT EEI +YP +L LS EKRV+PRSSILQHLISKG IK+ S G A  +SE +FL KFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MQYLSEDPHLLEMYQKKMAV 380
           MQYLSEDPHLLEMYQ+K  +
Sbjct: 361 MQYLSEDPHLLEMYQEKKKI 380

[Close]
BLAST of CmaCh12G001280 vs. TrEMBL
Match: A0A0A0LK19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1)

HSP 1 Score: 510.8 bits (1314), Expect = 1.5e-141
Identity = 268/382 (70.16%), Postives = 306/382 (80.10%), Query Frame = 1 

Query: 1   MTNFLFKVPL-RLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKD 60
           MTNFL K  L RLFAQ+L+ F  N+ TI  KFLSSLS+  +STN+ TVDYL+HT+G SK 
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFL 120
           SALAAAK+I LK TA+PDSV+ALF AYGFT S  ASIF R P+LLLA+PDT LKPK EFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLR 180
           SRNG +G+ L DVI RDP IL RSL KQIVPCIDFL NFFGSTD IVSLFS    T VL 
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240
            FSE VAPNIE+LRANGV DSNIAK+ W+RP  L+RD E F+DIVEKT+E GFNPSS MF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 TYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNK 300
            +GLCT   M KDKWLSKLH+F SFGWS+EQFQS+FLK+P +MNSSEE +KRAL+FF+ K
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 LDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFV 360
            DWT E+ISKY  LL  S+EKR++PRSSILQHLISKGFIK+ S G A    E KFL KFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MQYLSEDPHLLEMYQ--KKMAV 380
           M+YLSEDP+LLEMYQ  KKMA+
Sbjct: 361 MKYLSEDPNLLEMYQEKKKMAL 382

[Close]
BLAST of CmaCh12G001280 vs. TrEMBL
Match: M5XIM3_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018608mg PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 3.4e-90
Identity = 177/346 (51.16%), Postives = 233/346 (67.34%), Query Frame = 1 

Query: 34  SLSKISESTNNRTVDYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDT 93
           SL+ +S        DYL +TL F+ +SA   +K+IH +   NP  V +LF+ YGFT +  
Sbjct: 17  SLTTLSICDYPALTDYLTNTLAFTPESASQVSKKIHGRPPNNPYPVHSLFEHYGFTPTHI 76

Query: 94  ASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCID 153
           A I    P+ L A+P+  LKPK++FL++NG  G  LV  I+ +P IL RSL KQI PCI 
Sbjct: 77  AKIITICPSFLWANPEKTLKPKLDFLAQNGIYGQDLVITITNNPRILERSLNKQIAPCIG 136

Query: 154 FLRNFFGSTDGIVSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTL 213
           FL++F GS   ++S FS +RGT V+ +FS+S+  N E LR +GVP SNI K+   +P   
Sbjct: 137 FLKSFLGSASALLSHFSVKRGTAVVLRFSDSMGANAETLRQHGVPHSNIMKMIACQPGIF 196

Query: 214 ARDAEEFSDIVEKTKEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQS 273
           +RD E FS IV + +E GFNP S MF YG+CT   M KDKW+SK  +  SFGWSE +FQ+
Sbjct: 197 SRDVEVFSKIVREVEELGFNPLSMMFIYGVCTLFSMTKDKWVSKFEVLKSFGWSEAEFQA 256

Query: 274 LFLKQPTIMNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLI 333
           LFLKQP +M SSEE++KRAL+FFMNK+ W   +I KYP LL LS EKRV+PR SILQ LI
Sbjct: 257 LFLKQPLVMRSSEERLKRALDFFMNKMGWGTSDILKYPVLLCLSFEKRVLPRWSILQVLI 316

Query: 334 SKGFIKKT--SFGRAFLMSEDKFLVKFVMQYLSEDPHLLEMYQKKM 378
           +KG I K+  +  +AF+ +EDKF+ +FV  Y    P LLEMYQKK+
Sbjct: 317 AKGVITKSKKTTAKAFMQTEDKFVSEFVKGYEEHAPELLEMYQKKL 362

[Close]
BLAST of CmaCh12G001280 vs. TrEMBL
Match: A0A059AA44_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.3e-85
Identity = 156/332 (46.99%), Postives = 226/332 (68.07%), Query Frame = 1 

Query: 48  DYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLAD 107
           D L    GF  +SA A A  +  K     DS +A+F  +GF+ S+ A++  R+P  L ++
Sbjct: 62  DRLARAHGFPPESARAVAAAVDPKLAHKLDSFVAVFTGHGFSPSEVATVLLRYPRCLRSN 121

Query: 108 PDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVS 167
           P   LKPK++FL+ NG  G  LV V++ DP +LRRSL+ Q+ PC D L  FFG+    +S
Sbjct: 122 PVKNLKPKLDFLAGNGVAGETLVHVLTNDPYLLRRSLESQLAPCFDCLVKFFGNRRDAIS 181

Query: 168 LFSARRGTWVLRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKT 227
           L   +RGTWVL KF++S+  NI+ LR  GVPDS+I K+  VRPRTL+RDA EFS+IV++ 
Sbjct: 182 LLMVKRGTWVLHKFTDSMELNIDKLRQVGVPDSSITKLMTVRPRTLSRDATEFSEIVDEV 241

Query: 228 KEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEE 287
           +  G +PSS MF YG+ T  GMK+ KW +K+ +F  FGWS+EQF+++F+KQP IMN SE+
Sbjct: 242 RRMGLHPSSLMFVYGVITLAGMKRPKWEAKIAVFKKFGWSDEQFKAIFVKQPQIMNPSEK 301

Query: 288 KIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAF 347
           ++++ L FFM++L WT +E++  P++   S +KR++PR SIL  L+S+G +K+ S     
Sbjct: 302 RMEQFLKFFMSELGWTADELTNCPSIFMASFKKRILPRMSILLFLLSEGLVKRQSLLGKL 361

Query: 348 LMSEDKFLVKFVMQYLSEDPHLLEMYQKKMAV 380
           LMSEDKFL KFVM+ + + P LL+MY+ K  +
Sbjct: 362 LMSEDKFLSKFVMENVGKAPQLLQMYEDKQVL 393

[Close]
BLAST of CmaCh12G001280 vs. TrEMBL
Match: A0A059AB47_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.3e-85
Identity = 156/332 (46.99%), Postives = 226/332 (68.07%), Query Frame = 1 

Query: 48  DYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLAD 107
           D L    GF  +SA A A  +  K     DS +A+F  +GF+ S+ A++  R+P  L ++
Sbjct: 62  DRLARAHGFPPESARAVAAAVDPKLAHKLDSFVAVFTGHGFSPSEVATVLLRYPRCLRSN 121

Query: 108 PDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVS 167
           P   LKPK++FL+ NG  G  LV V++ DP +LRRSL+ Q+ PC D L  FFG+    +S
Sbjct: 122 PVKNLKPKLDFLAGNGVAGETLVHVLTNDPYLLRRSLESQLAPCFDCLVKFFGNRRDAIS 181

Query: 168 LFSARRGTWVLRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKT 227
           L   +RGTWVL KF++S+  NI+ LR  GVPDS+I K+  VRPRTL+RDA EFS+IV++ 
Sbjct: 182 LLMVKRGTWVLHKFTDSMELNIDKLRQVGVPDSSITKLMTVRPRTLSRDATEFSEIVDEV 241

Query: 228 KEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEE 287
           +  G +PSS MF YG+ T  GMK+ KW +K+ +F  FGWS+EQF+++F+KQP IMN SE+
Sbjct: 242 RRMGLHPSSLMFVYGVITLAGMKRPKWEAKIAVFKKFGWSDEQFKAIFVKQPQIMNPSEK 301

Query: 288 KIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAF 347
           ++++ L FFM++L WT +E++  P++   S +KR++PR SIL  L+S+G +K+ S     
Sbjct: 302 RMEQFLKFFMSELGWTADELTNCPSIFMASFKKRILPRMSILLFLLSEGLVKRQSLLGKL 361

Query: 348 LMSEDKFLVKFVMQYLSEDPHLLEMYQKKMAV 380
           LMSEDKFL KFVM+ + + P LL+MY+ K  +
Sbjct: 362 LMSEDKFLSKFVMENVGKAPQLLQMYEDKQVL 393

[Close]
BLAST of CmaCh12G001280 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 201.4 bits (511), Expect = 9.6e-52
Identity = 109/331 (32.93%), Postives = 186/331 (56.19%), Query Frame = 1 

Query: 46  TVDYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLL 105
           T++YL+ + G S DSA  A++++ L S   P++V+ L + +GFT +  +S+  + P LLL
Sbjct: 71  TLNYLIDSCGLSPDSATVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLL 130

Query: 106 ADPDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGI 165
           A+ +++L PK+ F    G +  +L   ++ DP+IL RSL  Q++P  +FL++   S + I
Sbjct: 131 ANAESVLLPKLSFFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKI 190

Query: 166 VSLFSARRGTWV-LRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIV 225
           V+  + RR TWV L   ++++ PNI  +   GVP+  I  +    P  + +   EF  I 
Sbjct: 191 VA--ALRRTTWVFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIA 250

Query: 226 EKTKEAGFNPSSPMFTYGLCTYLGM-KKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMN 285
           ++ +E GFNP    F   +    G   K  W     ++  +GWSE+     F K P  M 
Sbjct: 251 KQAQEMGFNPQKSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMM 310

Query: 286 SSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSF 345
            SE KI R + +F+N+++     I++ P +L+ S+EKR++PR S+ + L+S G +K+   
Sbjct: 311 LSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWS 370

Query: 346 GRAFLMSEDK-FLVKFVMQYLSEDPHLLEMY 374
             + L+  +K FL K V++Y  E P L+ +Y
Sbjct: 371 LTSLLVPVEKVFLEKLVIKYEEELPELMNLY 399

[Close]
BLAST of CmaCh12G001280 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-45
Identity = 102/350 (29.14%), Postives = 178/350 (50.86%), Query Frame = 1 

Query: 26  TISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDSALAAAKRIHLKSTANPDSVIALFKA 85
           ++S+    +L K      + TV YLV + G S +SA + ++ + L S+  PDSV+ALFK 
Sbjct: 38  SVSQVKSENLEKQKPCLESFTVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKD 97

Query: 86  YGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRRSLK 145
           +GFT     S+    P +L   P+ ++ PK+ F S  GF+      +IS  P +L  SL 
Sbjct: 98  HGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLH 157

Query: 146 KQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSNIAKI 205
           K+++PC D L++     + +V         + L K +  V+  + + R  GVPD +I  +
Sbjct: 158 KRLIPCYDSLKSILVEEESVVKCLKRGIRCFSL-KITHCVSLRVSICRELGVPDKSIKWL 217

Query: 206 FWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFG 265
               P T       F++++ +    GF+P    F + +  +    +     K  +F  FG
Sbjct: 218 VQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQCFG 277

Query: 266 WSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPR 325
           WS+E F +  ++ P  +  S+EKI   L + +N +     +I   P +L LS+EKR+ PR
Sbjct: 278 WSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRIKPR 337

Query: 326 SSILQHLISKGFIKK--TSFGRAFLMSEDKFLVKFVMQYLSEDPHLLEMY 374
           + ++  L+SKG +KK   ++     +   +F+ KFV++Y  E P L++ +
Sbjct: 338 NQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPF 386

[Close]
BLAST of CmaCh12G001280 vs. TAIR10
Match: AT5G64950.1 (AT5G64950.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-36
Identity = 97/350 (27.71%), Postives = 178/350 (50.86%), Query Frame = 1 

Query: 24  DPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDSALAAAKRI-HLKSTANPDSVIAL 83
           D  +S    SS +  +  +N   V++L    GF K  A+A A R  +LKS   P SVI +
Sbjct: 19  DRALSLHHFSSNATPASISNPAFVEFLRDN-GFQKPLAIAIAMRYPNLKSLEQPRSVIQM 78

Query: 84  FKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVLVDVISRDPSILRR 143
            K+Y F+ +        HP ++  + + IL+PK+ F    GFTG  L   +S++ S++  
Sbjct: 79  LKSYSFSDTQIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGV 138

Query: 144 SLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVL--RKFSESVAPNIELLRANGVPDS 203
           SL K+++P ++ L++        + +  +R G W+L  R  +  + PNI  L   G+  S
Sbjct: 139 SLVKKLIPTVEILKSIVAPKHEDLPVILSRCG-WLLLSRDPNLFLLPNISYLETCGIVGS 198

Query: 204 NIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFTYGLCTYLGMKKDKWLSKLHI 263
            +A +   +PR      E+    V +  + GF  +S M  + + +   + +  +  K+ +
Sbjct: 199 QLASLLRRQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKL 258

Query: 264 FTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEK 323
           F + G+SE++   +  + P ++  SE+K+     F++ ++    E ++K P +L  ++EK
Sbjct: 259 FMANGFSEDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEK 318

Query: 324 RVVPRSSILQHLISKGFI-----KKTSFGRAFLMSEDKFLVKFVMQYLSE 366
           RV+PR  +LQ L  KG +     KK +      M+E+ FL K+V+++  E
Sbjct: 319 RVIPRLKVLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDE 366

[Close]
BLAST of CmaCh12G001280 vs. TAIR10
Match: AT1G61980.1 (AT1G61980.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 126.3 bits (316), Expect = 3.9e-29
Identity = 103/397 (25.94%), Postives = 177/397 (44.58%), Query Frame = 1 

Query: 10  LRLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKDSALAAAKRIH 69
           LR+  Q+    + +  + S   LS   ++     + TV YLV +LG  K  A + ++++ 
Sbjct: 20  LRVLVQKASPLSNSFSSASAARLSP--RVGRKGKSFTVSYLVDSLGLPKKLAESVSRKVS 79

Query: 70  LKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVL 129
            +   NPDSV+ L +++GFT S  ++I   +P LL+AD +  L PK++FL   G +   L
Sbjct: 80  FEDKDNPDSVLNLLRSHGFTDSQISTIVTDYPQLLVADAEKSLAPKLQFLQSRGASSSEL 139

Query: 130 VDVISRDPSILRRSLKKQIVPCIDFLRNFF----------------GSTDGIVSLFSARR 189
            +++S  P IL +   K I    DF++                   G+ +  +   S  R
Sbjct: 140 TEIVSTVPKILGKRGHKTISVFYDFIKETLLDKSSKSEKSCQPFPQGNLENKIRNLSVLR 199

Query: 190 GTWV------------------LRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLAR 249
              +                    KF ES+   +E+        S   +   V  R   +
Sbjct: 200 ELGMPHKLLFPLLISCDVPVFGKEKFEESLKKVVEM--GFDPSTSKFVEALCVVQRLSDK 259

Query: 250 DAEEFSDIVEKTKEAGFNPSSPMFTYGLC-TYLGMKKDKWLSKLHIFTSFGWSEEQFQSL 309
           + E   D V   K  GF+       +     +L   + K L+ +  F   G+S ++F  L
Sbjct: 260 NIE---DKVNAYKRLGFDVEYVWTVFKRWPNFLTHSEKKILNTIETFLGLGFSRDEFSVL 319

Query: 310 FLKQPTIMNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLIS 369
             + P  +  S E +K+   F + K++W  + +   P +L  S+EKR VPR +++Q LIS
Sbjct: 320 IKRFPQGIGLSAEMVKKKTEFLVKKMNWPLKALVSNPAVLGYSLEKRTVPRGNVVQALIS 379

[Close]
BLAST of CmaCh12G001280 vs. TAIR10
Match: AT1G62120.1 (AT1G62120.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 122.1 bits (305), Expect = 7.4e-28
Identity = 105/399 (26.32%), Postives = 175/399 (43.86%), Query Frame = 1 

Query: 23  NDPTISRKFLSSL------SKISESTNNRTVDYLVHTLGFSKDSALAAAKRIHLKSTANP 82
           N    S  F SS       S+     +N TV YLV +LG +   A + + ++   +  NP
Sbjct: 29  NGSAFSNTFSSSAIAADVSSRDGRKGHNFTVSYLVDSLGLATKVAESISMKVSFDNKGNP 88

Query: 83  DSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFLSRNGFTGHVLVDVISRD 142
           DSV++L +++GFT S  ++I    P LL+ D +  L PK++FL   G +   L + +S  
Sbjct: 89  DSVLSLLRSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAV 148

Query: 143 PSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLRKFSESVAPNIELLRANG 202
           P IL +   K +    DF++    +     S       +       E+   N+ +LR  G
Sbjct: 149 PKILGKRKGKSLSRYYDFVKVIIEADKS--SKLEKLCHSLPEGSKQENKIRNLLVLREMG 208

Query: 203 VPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMFT------YGL------- 262
           VP   +  +  +         E+F + ++K  E GF+P++  F       YGL       
Sbjct: 209 VPQRLLFSLL-ISDAGDVCGKEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIEN 268

Query: 263 ----CTYLGMKKD-------KW---LSK--------LHIFTSFGWSEEQFQSLFLKQPTI 322
               C  LG+  D       KW   L+K        +  F   G+S ++F  +  + P  
Sbjct: 269 KFNACKRLGLAVDDVWAMFKKWPNILTKSEKKIENSVETFLGLGFSRDEFLMMVKRFPQC 328

Query: 323 MNSSEEKIKRALNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKK- 367
           +  S E +K    F + +++W  + ++  P +L  S+EKR VPR ++++ LISKG ++  
Sbjct: 329 IGYSTELMKTKTEFLVTEMNWPLKAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESE 388

[Close]
BLAST of CmaCh12G001280 vs. NCBI nr
Match: gi|449442098|ref|XP_004138819.1| (PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus])

HSP 1 Score: 516.5 bits (1329), Expect = 3.8e-143
Identity = 262/380 (68.95%), Postives = 304/380 (80.00%), Query Frame = 1 

Query: 1   MTNFLFKVPL-RLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKD 60
           M NFL K  L RL+AQ+L+ FA N  TI   FLSSLS+  +STN+RT+DYL+HT+G SKD
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFL 120
           SALAAAK+IHLK +++PDSV+ALF AYGFT S TA+IFCR P LLLADPD  LKPK EFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLR 180
           S+NG +G+ LVD+I R+P ILRRSL K+IVPC DFL NFFGSTD IVSLF     T VL 
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240
            FSE +APNIE+LRANGVPDS+IAK+FW RP  L+RD + F+DIVEKTKE GFNPSS MF
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERGFNPSSLMF 240

Query: 241 TYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNK 300
             GLC    M KD+WLSKLHIF S+GWS+EQFQS+FLKQP  MN SEE +KRAL+FFMNK
Sbjct: 241 INGLCIVSSMSKDRWLSKLHIFRSYGWSDEQFQSMFLKQPCFMNRSEEGLKRALDFFMNK 300

Query: 301 LDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFV 360
            DWT EEI +YP +L LS EKRV+PRSSILQHLISKG IK+ S G A  +SE +FL KFV
Sbjct: 301 WDWTREEIYRYPIVLILSFEKRVMPRSSILQHLISKGLIKRKSLGMALKISEHEFLEKFV 360

Query: 361 MQYLSEDPHLLEMYQKKMAV 380
           MQYLSEDPHLLEMYQ+K  +
Sbjct: 361 MQYLSEDPHLLEMYQEKKKI 380

[Close]
BLAST of CmaCh12G001280 vs. NCBI nr
Match: gi|778670382|ref|XP_004143080.2| (PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus])

HSP 1 Score: 510.8 bits (1314), Expect = 2.1e-141
Identity = 268/382 (70.16%), Postives = 306/382 (80.10%), Query Frame = 1 

Query: 1   MTNFLFKVPL-RLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKD 60
           MTNFL K  L RLFAQ+L+ F  N+ TI  KFLSSLS+  +STN+ TVDYL+HT+G SK 
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFL 120
           SALAAAK+I LK TA+PDSV+ALF AYGFT S  ASIF R P+LLLA+PDT LKPK EFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLR 180
           SRNG +G+ L DVI RDP IL RSL KQIVPCIDFL NFFGSTD IVSLFS    T VL 
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240
            FSE VAPNIE+LRANGV DSNIAK+ W+RP  L+RD E F+DIVEKT+E GFNPSS MF
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERGFNPSSLMF 240

Query: 241 TYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNK 300
            +GLCT   M KDKWLSKLH+F SFGWS+EQFQS+FLK+P +MNSSEE +KRAL+FF+ K
Sbjct: 241 IHGLCTLSSMSKDKWLSKLHLFRSFGWSDEQFQSMFLKKPFVMNSSEEHLKRALDFFVIK 300

Query: 301 LDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFV 360
            DWT E+ISKY  LL  S+EKR++PRSSILQHLISKGFIK+ S G A    E KFL KFV
Sbjct: 301 WDWTWEDISKYSLLLNFSLEKRLIPRSSILQHLISKGFIKRKSVGSALNSPEHKFLEKFV 360

Query: 361 MQYLSEDPHLLEMYQ--KKMAV 380
           M+YLSEDP+LLEMYQ  KKMA+
Sbjct: 361 MKYLSEDPNLLEMYQEKKKMAL 382

[Close]
BLAST of CmaCh12G001280 vs. NCBI nr
Match: gi|659089103|ref|XP_008445328.1| (PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo])

HSP 1 Score: 505.8 bits (1301), Expect = 6.8e-140
Identity = 262/383 (68.41%), Postives = 302/383 (78.85%), Query Frame = 1 

Query: 1   MTNFLFKVPL-RLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKD 60
           M N L K  L R FAQ+L+ F  N+ TI  KFLSSLS+  +STN+RT DYLVHT+G  KD
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFL 120
           SALAAAK+I LK TA+PDSV+ALF AYGFT S  ASIF +   LLLADPDT LKPKIEFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLR 180
           S+NG +G++L DVI RDP IL RSL KQIVPCIDFL NFFGSTDG+V LFSA  GT VL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 KFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240
            FSES+APN+E+LRANGVPDSNIAK+  +RP  L++D E F DIVEKTKE G NPSS MF
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMGLNPSSLMF 240

Query: 241 TYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNK 300
            +G+C    M KDKWLSK+H+F SFGWS+EQFQS+FLKQP  M  SEE +KR L+FFMNK
Sbjct: 241 IHGMCMIASMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 LDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFV 360
            DWT E++SKYP LL LS+EKRV+PRSSI+Q LISKGFIK+ SFG+A    E  FL KFV
Sbjct: 301 WDWTLEDVSKYPVLLNLSLEKRVIPRSSIVQRLISKGFIKRKSFGKALQRPEQWFLEKFV 360

Query: 361 MQYLSEDPHLLEMYQ---KKMAV 380
           M+YLSEDPHLLEMYQ   KKMA+
Sbjct: 361 MKYLSEDPHLLEMYQETKKKMAI 383

[Close]
BLAST of CmaCh12G001280 vs. NCBI nr
Match: gi|659068543|ref|XP_008444984.1| (PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo])

HSP 1 Score: 501.5 bits (1290), Expect = 1.3e-138
Identity = 261/382 (68.32%), Postives = 302/382 (79.06%), Query Frame = 1 

Query: 1   MTNFLFKVPL-RLFAQELQKFAGNDPTISRKFLSSLSKISESTNNRTVDYLVHTLGFSKD 60
           M N L K  L RLFAQ+LQ F  N+ TI  K LSSLS+  +STN+RT+DYLVHT+G  KD
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILKPKIEFL 120
           SALAAAK+  LK TA+PDSV+ALF AYGFT S  ASIF +   LLLA+PDT LKPK+EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDGIVSLFSARRGTWVLR 180
           S+NG +G++LV+VI RDP IL RSL KQIVPCIDFLRNFFGSTDG+V LFSA  GT VL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 KFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGFNPSSPMF 240
            FSES+APNIE+LRANGV DSNIAK+  +RP  L+RD E F DIVEK KE G NPSS MF
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIGLNPSSLMF 240

Query: 241 TYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRALNFFMNK 300
            +GLC    M KDKWLSK+H+F SFGWS+EQFQS+FLKQP  M  SEE +KR L+FFMNK
Sbjct: 241 IHGLCMISSMSKDKWLSKVHLFKSFGWSDEQFQSMFLKQPFFMKRSEEHLKRMLDFFMNK 300

Query: 301 LDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSEDKFLVKFV 360
            DWT E+ISKY  LL LS+EKRV+PRSSI++HLISKGFIK+ SFG A    E +FL KFV
Sbjct: 301 WDWTREDISKYAVLLNLSLEKRVIPRSSIVRHLISKGFIKRKSFGIALQRPEHEFLEKFV 360

Query: 361 MQYLSEDPHLLEMYQ--KKMAV 380
           M+YLS+DPHLLEMYQ  KKMA+
Sbjct: 361 MKYLSKDPHLLEMYQEKKKMAI 382

[Close]
BLAST of CmaCh12G001280 vs. NCBI nr
Match: gi|1009119129|ref|XP_015876211.1| (PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba])

HSP 1 Score: 395.2 bits (1014), Expect = 1.3e-106
Identity = 205/388 (52.84%), Postives = 271/388 (69.85%), Query Frame = 1 

Query: 1   MTNFLFKVPLRLFAQEL---QKFAGNDPTISR----KFLSSLSKISESTNNRTVDYLVHT 60
           M  FL K+PLRL    +        N   I +    K LS+LS  S S+++ TVDY +++
Sbjct: 1   MFRFLSKIPLRLPQVAIFIIPTSNANSNAIGQQLFLKSLSTLSPPSSSSSDSTVDYFINS 60

Query: 61  LGFSKDSALAAAKRIHLKSTANPDSVIALFKAYGFTLSDTASIFCRHPNLLLADPDTILK 120
           LG S DSAL AAK I  + TA  DSV+ LF+ YGF+ +  A IF R P+LLL+DP   LK
Sbjct: 61  LGLSPDSALTAAKLIRRQPTAKSDSVLELFRHYGFSSAQIADIFSRFPSLLLSDPQKNLK 120

Query: 121 PKIEFLSRNGFTGHVLVDVISRDPSILRRSLKKQIVPCIDFLRNFFGSTDG-IVSLFSAR 180
           PK+EFLS+NG +G  L+ ++S DP+IL RSL KQI PCI FL+ FF +    IVSL S +
Sbjct: 121 PKLEFLSKNGISGQALLSIVSTDPTILLRSLNKQIEPCIGFLKTFFKNNKAEIVSLLSVK 180

Query: 181 RGTWVLRKFSESVAPNIELLRANGVPDSNIAKIFWVRPRTLARDAEEFSDIVEKTKEAGF 240
           RGTWV+ KFSE++APNIE LR++GV D+ I K+  VRP  L+R A++FS+ V   KE GF
Sbjct: 181 RGTWVIHKFSETMAPNIETLRSHGVSDACIKKMIIVRPAALSRFADDFSEFVRVVKEMGF 240

Query: 241 NPSSPMFTYGLCTYLGMKKDKWLSKLHIFTSFGWSEEQFQSLFLKQPTIMNSSEEKIKRA 300
           +PSS MF +G+CT+ GMKKDKW+SK+ +F  FGWSEE+ +SL +KQP +MNSS E++ ++
Sbjct: 241 DPSSVMFIHGVCTFSGMKKDKWVSKMEVFKRFGWSEEEVRSLVVKQPKVMNSSSERLSKS 300

Query: 301 LNFFMNKLDWTHEEISKYPNLLYLSVEKRVVPRSSILQHLISKGFIKKTSFGRAFLMSED 360
           L+FFMNKL W+ ++ISKYP +L LS E+RV PRS IL+ LISKG I K   G  F++ ED
Sbjct: 301 LDFFMNKLGWSVDDISKYPTVLLLSFERRVFPRSIILKFLISKGHIDKKKMGSGFILPED 360

Query: 361 KFLVKFVMQYLSEDPHLLEMYQKKMAVL 381
           KFL  FVM+Y  + P LL+MYQ K  V+
Sbjct: 361 KFLKNFVMEYEEKLPQLLDMYQSKKQVI 388

The following BLAST results are available for this feature:
BLAST of CmaCh12G001280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MTEF8_ARATH2.0e-0623.65Transcription termination factor MTERF8, chloroplastic OS=Arabidopsis thaliana G... [more]
BLAST of CmaCh12G001280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQN0_CUCSA2.7e-14368.95Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1[more]
A0A0A0LK19_CUCSA1.5e-14170.16Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1[more]
M5XIM3_PRUPE3.4e-9051.16Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa018608mg PE=4 S... [more]
A0A059AA44_EUCGR3.3e-8546.99Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1[more]
A0A059AB47_EUCGR3.3e-8546.99Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1[more]
BLAST of CmaCh12G001280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G07900.19.6e-5232.93 Mitochondrial transcription termination factor family protein[more]
AT1G21150.11.0e-4529.14 Mitochondrial transcription termination factor family protein[more]
AT5G64950.14.3e-3627.71 Mitochondrial transcription termination factor family protein[more]
AT1G61980.13.9e-2925.94 Mitochondrial transcription termination factor family protein[more]
AT1G62120.17.4e-2826.32 Mitochondrial transcription termination factor family protein[more]
BLAST of CmaCh12G001280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449442098|ref|XP_004138819.1|3.8e-14368.95PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus][more]
gi|778670382|ref|XP_004143080.2|2.1e-14170.16PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus][more]
gi|659089103|ref|XP_008445328.1|6.8e-14068.41PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo][more]
gi|659068543|ref|XP_008444984.1|1.3e-13868.32PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo][more]
gi|1009119129|ref|XP_015876211.1|1.3e-10652.84PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003690double-stranded DNA binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005575 cellular_component
molecular_function GO:0003690 double-stranded DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh12G001280.1CmaCh12G001280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 184..355
score: 2.3E-20coord: 81..233
score: 3.3
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 130..162
score: 0.15coord: 304..338
score: 6.3coord: 272..303
score: 1.9coord: 94..125
score: 0.0022coord: 29..57
score: 17
NoneNo IPR availablePANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 26..377
score: 3.3E
NoneNo IPR availablePANTHERPTHR13068:SF28MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN-RELATEDcoord: 26..377
score: 3.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh12G001280CmoCh12G001030Cucurbita moschata (Rifu)cmacmoB176
CmaCh12G001280Lsi08G009300Bottle gourd (USVL1VR-Ls)cmalsiB185
CmaCh12G001280Cp4.1LG07g01080Cucurbita pepo (Zucchini)cmacpeB203
CmaCh12G001280CsGy2G016750Cucumber (Gy14) v2cgybcmaB184
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh12G001280Cucumber (Chinese Long) v3cmacucB0225
CmaCh12G001280Watermelon (97103) v2cmawmbB195
CmaCh12G001280Cucurbita maxima (Rimu)cmacmaB192
CmaCh12G001280Cucumber (Gy14) v1cgycmaB0094
CmaCh12G001280Cucurbita moschata (Rifu)cmacmoB192
CmaCh12G001280Wild cucumber (PI 183967)cmacpiB199
CmaCh12G001280Cucumber (Chinese Long) v2cmacuB196
CmaCh12G001280Melon (DHL92) v3.5.1cmameB157
CmaCh12G001280Watermelon (Charleston Gray)cmawcgB170
CmaCh12G001280Watermelon (97103) v1cmawmB149
CmaCh12G001280Cucurbita pepo (Zucchini)cmacpeB172
CmaCh12G001280Cucumber (Gy14) v2cgybcmaB719
CmaCh12G001280Melon (DHL92) v3.6.1cmamedB171
CmaCh12G001280Silver-seed gourdcarcmaB0185
CmaCh12G001280Silver-seed gourdcarcmaB0920