CmoCh12G001030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G001030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial transcription termination factor family protein
Location	Cmo_Chr12 : 558943 .. 565069 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGATTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCAACGTGATCTCTAGGGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAATTTTTTTTGGCTCTACTGATGTTATAGTCTCGCTCTTTTCTGCTAGGCGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGTTTTAATCCTTCGAGTCCGATGTTTATTTATGGGCTGTGTACGTTTTCAGGGATGAAAAAGGACAAATGGTTATCGAAACTGCATATTTTTACAAGTTTTGGGTGGTCAAAGGAGCAGTTTCAATCTCTATTTCTCAAGCAGCCCACGTTTATGAATTCGTCTGAAGAGAAAATAAAGAGGGCCTTGGATTTCTTTATGAACAAATTGGACTGGACGCACGAAGAAATTTCCAGGTACCCAATTGTACTTTATCTTAGTTTTGAAAAAAGGGTGGTTCCGAGGTCGTCTATTCTTCAGCACCTGATGTCAAAAGGTTTTATCAAGAAGACAAGTTTTGGCAGAGCATTTATGCTTAGCGAGGATAAGTTTTTGGTGAAGTTTGTGATGCAGTATCTTTCTGAGGATCCACATCTACTTGAGATGTACCAGAAGAAGATGGCAGTTTTATAAACGCTTGGAGTGCAATTCAGGTAATTCGTCTCTTCTGTAAAAACTGTGCACTTCACTTGTGAGAAGATTGTAGGTTTGTGTGTAAAACTTATGAAATTTCACATATCTTAGAACTGTTATTCACTGACAGTAAGACCCGTGAAGAAGGTTATAGCATTTAGATCTTTTAGGAATGTTCCCACTTGCACGAGACTGCCTGCCAAGAATCAAGTAACTAATATGATGCTTAATTTTAAGAAATGATATACTTAAAACTATCCCCATAACATCAAATGTTCCAATAAGAATCAACTACAATTGAGTTCATACTGTAATTAATCGACTTTTGGTGGGTCATTGGAGCTTCTGGTAGATTACCCTGTCCTATTCTATTAGCATGTTTACAGTACGAGATCCAATAACCTACCAAAAATCATGGAACTATAAAGCTTTTGTAAATGAAAAAATGTGAGATCCCACCTCGATTGGAGAGAGGAATGAGTGTCAGCGAGGATGCTGGGCCCCGAAGGAGGGTGGATTGTGAGATCCCACATTGGTTGGAGAGGGGAATGAACCATTCTTTATAAGCGTTTGAAAACCTCTCCCTAGCAGACGCATTTTAAAAACCTTGAGGGGAAGCTCAAGAGGGAAAGCCGATGACAATATCTGCTAGCGGGGGTTTGGTCTGATACAAAAAAACCTCGAGGAAATTGTAACATCTCGATGCTTTAGTTTAGGAGATGTGCTATCCCCCTTCTCTTTTTGTGGTTGCTGCTCTGATTGATCCAGTAGGCTGCTCATTTATGGTCAACATGCTTGTGATATTGGGAAAAATTCTTTAGTTGGAAGTGCACATTAAAGGTGAACCATATCTAGTATGAAACTATCTGGTTTGTAGAGGTGAAGACTTCGCAGAAGATAGTTTAGATCTTTGAGGCTTAAAAGTTCAAACTAAACTTTCTAAATGGTAAATGTCGGGAGTAAATTGGTGTAGAAGGACTTTTGAGACACAGACTCAAGTCTGGATTTTGTAATGGATCTTTTCCAATCAAATACCTTGGCCATTGAGATGGAACCCCATAGGTTAATCAAAATAAAGTGGAGTATGAAAGGATAGAGATAGAGAGGAAGTGGGATTTGAGCTATGAGAGGAATCTTGAAGGAAAATACTTTCCATATACAACATTTAAAGGTGTCTAGGTACTACACATCTCCCTATCAGCCACAAGTTCTTCCAAGAGTTAGAAGTGAAGGCCTTGTCCTCTAAATAGAGAAATTCTTGAGGAAAAAAGAAGTGGTTTCCTAACCAAAATGGTTAAACTGAATTCAAATAGAAGAATGAATAAGATCCTGTTCTTTCCTTGATATCTAATTCCTTCCAAAACCTGACTGGAGACTATGAAAATCTATATAAGGGCAAGCCAGAAGATGGGGAATCCCCATTTGATTCGGAATAGTAGTCTGTTGGTTAACTTTAATCCAAGATGGAGTTATATTTGTGAAAAGCTTTCTGATGATGACTTCATTGGAAGACAGGACACTTCGTACGTGTAGTCCACTTGACCTTTTGGGTGGGGTTTTCCCCTTCCTCACTCACTAGGCTGTCTTTTTTTTCGTTCTTTTGTTAATATACAGTGTGAAAAGCAAAATGGAGATCTTAACTTCCTCTTTAATTCTGTCCTCTGTTGTGGATCCGTTGGTCTACACGCTAAAGGATTGAGTTGGTGCCAACTTAGTTTGGTCTTCTCTTACTCTGCGAACGACCTCCAGTTACTCTCTTTTAAGAGTAGGATAAAGTTCTTTGGAGGATCATTGTAACAGTTCAAGCCCACCGCTAATAGATATTGTCTTCTTTGGGTTTTCTCTTAAAGTTTTTAAAATGCGTCTGCTAGGGATAGGTTTCTACACCCGTATAAAGGAGGATTCGTTCCTCTCTCCAACCGATGTAGGATCTCACAATCCACTCTCCCTTTGGGGTTCACTGTCCTCGTTGACACACGTTCCTCCAATTGACGTGGGATCTCACAATTATGGTGAAGACTGAATACTATGAGTTAGGAATTATAGGTTCGGAAGGAGTAGGACAACTTTCGTGGGGGAGGCAGGATAGTTTAAAATCAAAGAAATCTCTATTCTTCACACCCCACCATTTTTCTTCCAGATTCTCGTAATGCGACCCAAAACTTTAGGTTAGCATTTTTCTTCTTTCTCAGTGGTCTAAGATGTTATTCATCCAAGAACATGAACTTCCTGTTAGCAATGATATTGTAAATGGGAACATTCTTGGTGACTACGTTCAAGTTGCTTCCAAGTTTAGAGCTGATTCAGGGGTTGAATGTTTCCATACTGCCATGAATGAACGTTGTAAATGTGTAAATGCATTATCAATCCTTTTCTGTTACTTCTGCTGCAGTTTGATTATCGTTTTGAATTCAACACAACATATATTAGTTTGGTTCGACTTCGCACATATCGTTCTCACATTTGCGTTCTCGGTCATGAATATATTCTTTTTTCAGGAGGAAAACAGGCAAAATTTTGGAAAGTCCAGGTTTTATGGACATCAATTTCTGGCAGGATGGTCTTTGAAGAGAGATTTGAGATTCTTATAGGGTTTTGTTGTGTATTTTACCCAATTTTGAGATGCAGAGATGAATGTATTGTATTGGACATGTAACTATTCAAATTTTCCATTTTGTCTTATTTAGTTAAAATTTTATTTTTATTTCTATAAATGACAAGATATTAGGTTATGCATCTATCCTTGCCGAAAAAGGTGCAATTTTCAGGAAGTTATTACGTTAATTGAAAATGTAACTATTCAAGTTTAATCGAATAAAAATAAAAGAAATAATTAAATGTGATATCCTGGAAATGGAGAGAAAACTAGTTTTCTGCGAGACTTTTATTACTTAATAGAAACATTCCTATTTCTTTTTCTTATCTTAAAACCCTAGAATGCTTTATTGGGAAAGGCCTAATCTAAAACCCATACCTATCAAATGTCTTGTGATTATTTTTATATTTTTATGCCCAACCTTTTACCTTGATAACAATTTTCTCTCCAAACTTTCCTCCGGAACATTGAGGTTGCTTTTCAGAGGAAGAATTGAGTGGAAGTAAGGTATTGATGTTGGGATCATTGTGTCAAAGAAGGTTAACCGTCGGAAATCGGTGTTGAGGACGTTATGGGATCGTCGGCGCGTCACCGGAATTCGGGTAAGGGAGGCAAGGTTTTTGGAATTAGGTTGAGCCGTAGACGCACACCCAACAGCTCCGGCAGCTTCGCATGCACAGTGCGGCCAGCTCGCATGTGTACGAAATCGGCTCGGTTTCGTCAATTCCCGCGGCTCGGCTTGGCGGCTTAGTTTGTCAGCTCGGTAGCTCGGCTTGGTGGCTCGATATCACTATAATATATCGATTCCATGGTTTTCGACCCTTTCGAAGCCGTTTCTGCCCTTAGTTTTACCATCCGAGGTCAGTATGGTTCATAAACGATAAAGACAGATTAGGTCGGGAGTTTATTTTGATAAATAGTATGAGATTTAGCTAGGGTATGTTATGAAAGGCTCCTAAGTTTTGATGTGATTATTATAGGACGTATTTAACGGTTGGGATTAGCTTGTTGTGAGTGACTTCAACCAAGGCCATCGAGGTAAGTGACCTTACTGTTGGAGTTAGTTTACTACGTGTTGTATGATGGTGCGTGCCCTGTGACCCCTGCATGCACCATGTTTTATTATGTGATTTGACTAAATGATGTATGAATTATGTGGCTGTTTATGCTATGAAACGTAATGAGTTATGTTGACTGTTGACTGTCTATGTTATGTGAAGTTATGAATAATATGTTAGTAATATATGCCATGAAAATGTTGATTGATGTCATGGATACACGTTGTACTATCGAGTCATGTCATGAGATGTTTATGCAAATGAGATTTACTTTCATGTTATGTAATATGTCATGTAATGTAAGTCATGTGAGATGCCATGTGATGTAAGAAACGTAAATGCGATTGTTAGCACGGCTTATGTAATGCCATGTTAGATATGTTAAGGGATCTCATGCATATATGTATGTCACGTGCATCGAGATTCTTCCTCTTTACGTTACAAAAAAATGAAATACGATATTTATGTTCGCCATGATATCATGCGGGCCCTTTTCTGTTCTGTGGTGTCCGCCAACGTGTAACACGTTGTGCCCGACCAAGTCAGGCCCAGGGGGTATGTTTACGAGCTTGGGTCCATGTACACGTACATGGGCCACGTGTAACATGTTGTGTTCGACCAAGTCATGCCCAGGGGGTATGTTTACGAGCCTGGGTCCATGTACACGTACATGGGCCGTGTGTGAAGGAGTACCACACACCCAACCCTACCCAGAATAGAAAAGCGCCCAAGGCTATGTAAAGTTTATGAAAAGTTAGGTCCCGCTCATATGTTGCATGTGTTTGCATTCTTAATCCCAATAGTGGGGTGACTGAGTATTTCATAAAATACTCAAGCCATGCGCCCAAGGCTATGTGTTTGCATTTCTAATCCCAATAGTGGGATGACTCAAACCCTTCGGGTAAAATAAGAACAACCCCACATTCAAACCGCCCCTTTTCCCATTTGCAAGAACTTGTTTCACTTGCATATCCTAAGGAATTCAAACAATGGCTTCAAATACAGTATCAGGAAGTATCGTATCTCTGGTAGCACTGGTGCCCGTCACATGCTTCAAAGTGCAAAAGGGCAGAGGGAATTGAAACAAGAAGAAGATTGGAATTCGATCCGTGAAATCTTCAAGACCTCTTCTCACTAGCTATAGCTCTTGCGCGCTTCCCGAATCGATCTAGACGAGACTCGAGATGGATAGATATGTCCGACCAAAAAAAAGAAAGTTCTTTATAGATGAGTTGGAGTCGATTCACTAAAATAAAAAAAAAAAAAAAATAGTATTTTAACCAAATTTTTGTTCATTTTAATGTAAAATTTTATGATATATTAGTTATAA

mRNA sequence

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGATTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCAACGTGATCTCTAGGGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAATTTTTTTTGGCTCTACTGATGTTATAGTCTCGCTCTTTTCTGCTAGGCGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGAGGAAAACAGGCAAAATTTTGGAAAGTCCAGTTATAA

Coding sequence (CDS)

ATGACCAATTTTCTGTTCAAAGTTCCTCTGCGTCTCTTTGCTCAAGATCTCCAGAAGTTTGCAGGGAACGACACCACAATTTCCCGCAAATTCCTCTCTTCTCTGTCTGAAATCTCTCAATCAACCAACAATCGGACGGTCGATTACCTTGTTCATACCCTTGGATTCTCCAAGGACTCAGCTCTCGCCGCTGCGAAGCGAATCCATCTCAAAACTACTGCAAATCCCGACTCTGTCATTGCTCTCTTCAAGGCCTATGGATTCACACTGTCCGATACTGCCAGCATCTTTTGCAGAAATCCTAATCTCCTCCTTGCTGATCCGGACACAATACTCAAACCTAAGTTTGAGTTTCTCTCTCGAAATGGTTTCACCGGTCATGTTCTCGTCAACGTGATCTCTAGGGATCCGGAAATTCTTAGAAGGAGTTTGAAGAAGCAGATTGTTCCGTGTATTGATTTTCTCAGAATTTTTTTTGGCTCTACTGATGTTATAGTCTCGCTCTTTTCTGCTAGGCGTGGGACTTGGGTTTTGCGCAAGTTTTCAGAATCTGTGGCTCCCAATATCGAACTATTGAGAGCTAATGGCGTGCCTGATTCGAAGATCGCGAAGATCTTTTGGGTGCGCCCGAGGACACTAGCAAGGGATGCGGAAGAGTTCAGTGACATCGTCGAGAAGACGAAGGAAGCTGGAGGAAAACAGGCAAAATTTTGGAAAGTCCAGTTATAA

Homology

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BLAST of CmoCh12G001030 vs. TrEMBL
Match: A0A0A0LQN0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 3.2e-81
Identity = 159/232 (68.53%), Postives = 185/232 (79.74%), Query Frame = 1


Query: 1   MTNFLFKVPL-RLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKD 60
           M NFL K  L RL+AQDL+ FA N TTI   FLSSLS+  QSTN+RT+DYL+HT+G SKD
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFL 120
           SALAAAK+IHLK +++PDSV+ALF AYGFT S TA+IFCR P LLLADPD  LKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLR 180
           S+NG +G+ LV++I R+P ILRRSL K+IVPC DFL  FFGSTD IVSLF     T VL 
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
            FSE +APNIE+LRANGVPDS IAK+FW RP  L+RD + F+DIVEKTKE G
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERG 232

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BLAST of CmoCh12G001030 vs. TrEMBL
Match: A0A0A0LK19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1)

HSP 1 Score: 305.1 bits (780), Expect = 7.8e-80
Identity = 163/232 (70.26%), Postives = 183/232 (78.88%), Query Frame = 1


Query: 1   MTNFLFKVPL-RLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKD 60
           MTNFL K  L RLFAQDL+ F  N+TTI  KFLSSLS+  QSTN+ TVDYL+HT+G SK 
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFL 120
           SALAAAK+I LK TA+PDSV+ALF AYGFT S  ASIF R P+LLLA+PDT LKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLR 180
           SRNG +G+ L +VI RDP IL RSL KQIVPCIDFL  FFGSTD IVSLFS    T VL 
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
            FSE VAPNIE+LRANGV DS IAK+ W+RP  L+RD E F+DIVEKT+E G
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERG 232

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BLAST of CmoCh12G001030 vs. TrEMBL
Match: A0A059AAC3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00315 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-39
Identity = 91/198 (45.96%), Postives = 120/198 (60.61%), Query Frame = 1


Query: 34  SLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDT 93
           S +  + S+ +   D LV   GF  +SA A A  +  K     DS +ALF+  GF  SD 
Sbjct: 33  STTAAAASSPSSIADALVRAHGFPPESARAVAGAVAPKLARYLDSFVALFRGRGFAPSDI 92

Query: 94  ASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCID 153
           ASI  R P+ L++    +L+PK EF   NG  G  LV+V+  DP +L RSLK Q+ PC D
Sbjct: 93  ASILTRCPDTLVSKASNLLEPKLEFFEENGVAGEALVHVLVNDPYVLGRSLKSQLAPCFD 152

Query: 154 FLRIFFGSTDVIVSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTL 213
            L  FFGS + + +    +RGTWVLR FSES+  NI  LR +GVPDS IAK+  +RPRTL
Sbjct: 153 CLVRFFGSREDVAAHLVVKRGTWVLRAFSESMEANIATLRRHGVPDSSIAKMMTLRPRTL 212

Query: 214 ARDAEEFSDIVEKTKEAG 232
           +RD  +FSDIV++ K  G
Sbjct: 213 SRDKGQFSDIVDEIKGMG 230

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BLAST of CmoCh12G001030 vs. TrEMBL
Match: A0A059AB47_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.1e-39
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 1


Query: 48  DYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLAD 107
           D L    GF  +SA A A  +  K     DS +A+F  +GF+ S+ A++  R P  L ++
Sbjct: 62  DRLARAHGFPPESARAVAAAVDPKLAHKLDSFVAVFTGHGFSPSEVATVLLRYPRCLRSN 121

Query: 108 PDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVS 167
           P   LKPK +FL+ NG  G  LV+V++ DP +LRRSL+ Q+ PC D L  FFG+    +S
Sbjct: 122 PVKNLKPKLDFLAGNGVAGETLVHVLTNDPYLLRRSLESQLAPCFDCLVKFFGNRRDAIS 181

Query: 168 LFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKT 227
           L   +RGTWVL KF++S+  NI+ LR  GVPDS I K+  VRPRTL+RDA EFS+IV++ 
Sbjct: 182 LLMVKRGTWVLHKFTDSMELNIDKLRQVGVPDSSITKLMTVRPRTLSRDATEFSEIVDEV 241

Query: 228 KEAG 232
           +  G
Sbjct: 242 RRMG 245

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BLAST of CmoCh12G001030 vs. TrEMBL
Match: A0A059A9T0_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 5.1e-39
Identity = 85/184 (46.20%), Postives = 117/184 (63.59%), Query Frame = 1


Query: 48  DYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLAD 107
           D L    GF  +SA A A  +  K     DS +A+F  +GF+ S+ A++  R P  L ++
Sbjct: 62  DRLARAHGFPPESARAVAAAVDPKLAHKLDSFVAVFTGHGFSPSEVATVLLRYPRCLRSN 121

Query: 108 PDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVS 167
           P   LKPK +FL+ NG  G  LV+V++ DP +LRRSL+ Q+ PC D L  FFG+    +S
Sbjct: 122 PVKNLKPKLDFLAGNGVAGETLVHVLTNDPYLLRRSLESQLAPCFDCLVKFFGNRRDAIS 181

Query: 168 LFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKT 227
           L   +RGTWVL KF++S+  NI+ LR  GVPDS I K+  VRPRTL+RDA EFS+IV++ 
Sbjct: 182 LLMVKRGTWVLHKFTDSMELNIDKLRQVGVPDSSITKLMTVRPRTLSRDATEFSEIVDEV 241

Query: 228 KEAG 232
           +  G
Sbjct: 242 RRMG 245

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BLAST of CmoCh12G001030 vs. TAIR10
Match: AT5G07900.1 (AT5G07900.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.6e-26
Identity = 69/224 (30.80%), Postives = 123/224 (54.91%), Query Frame = 1


Query: 9   PLRLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKDSALAAAKRI 68
           P+ +F+   Q F+   TT++ K  +   +  Q   + T++YL+ + G S DSA  A++++
Sbjct: 37  PIFVFSLQTQ-FSSPVTTLTSK--NPKDDEQQQKLSFTLNYLIDSCGLSPDSATVASRKL 96

Query: 69  HLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHV 128
            L +   P++V+ L + +GFT +  +S+  + P LLLA+ +++L PK  F    G +  +
Sbjct: 97  LLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLSFFLSIGVSKSL 156

Query: 129 LVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWV-LRKFSESVAP 188
           L   ++ DP IL RSL  Q++P  +FL+    S + IV+  + RR TWV L   ++++ P
Sbjct: 157 LARTLASDPTILTRSLVNQLIPSYNFLKSVLDSDEKIVA--ALRRTTWVFLEDHTKNLVP 216

Query: 189 NIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           NI  +   GVP+  I  +    P  + +   EF  I ++ +E G
Sbjct: 217 NINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMG 255

[Close]

BLAST of CmoCh12G001030 vs. TAIR10
Match: AT1G21150.1 (AT1G21150.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 99.8 bits (247), Expect = 2.5e-21
Identity = 57/187 (30.48%), Postives = 93/187 (49.73%), Query Frame = 1


Query: 46  TVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLL 105
           TV YLV + G S +SA + ++ + L ++  PDSV+ALFK +GFT     S+    P +L 
Sbjct: 58  TVSYLVDSCGLSLESAKSNSRFVKLVSSKKPDSVLALFKDHGFTNDQITSVIKSFPRVLS 117

Query: 106 ADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVI 165
             P+ ++ PK  F S  GF+      +IS  P++L  SL K+++PC D L+      + +
Sbjct: 118 LSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSLHKRLIPCYDSLKSILVEEESV 177

Query: 166 VSLFSARRGTWVLR-KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIV 225
           V     +RG      K +  V+  + + R  GVPD  I  +    P T       F++++
Sbjct: 178 VKCL--KRGIRCFSLKITHCVSLRVSICRELGVPDKSIKWLVQASPFTFFSRERRFNEVL 237

Query: 226 EKTKEAG 232
            +    G
Sbjct: 238 NRVCSYG 242

[Close]

BLAST of CmoCh12G001030 vs. TAIR10
Match: AT1G61970.1 (AT1G61970.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-16
Identity = 60/220 (27.27%), Postives = 105/220 (47.73%), Query Frame = 1


Query: 13  FAQDLQKFAGNDTTISRKFLSSLS-EISQSTNNRTVDYLVHTLGFSKDSALAAAKRIHLK 72
           F+  +QK +      S    + LS  + +  NN TV YLV +LG +   A + ++++  +
Sbjct: 20  FSLSVQKASPTSNFFSSASAACLSPRVGRKGNNFTVSYLVDSLGLTTKLAESISRKVSFE 79

Query: 73  TTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGFTGHVLVN 132
              NPDSV+ L  ++GFT S  ++I    P LL+AD +  L PK +FL   G +   +  
Sbjct: 80  DKNNPDSVLNLLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITE 139

Query: 133 VISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLRKFSESVAPNIEL 192
           ++S  PEIL +   K I    DF++     T +  S  + +    + +   E+   N+ +
Sbjct: 140 IVSSVPEILGKKGHKTISVYYDFIK----DTLLEKSSKNEKLCHSLPQGNLENKIRNVSV 199

Query: 193 LRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           LR  G+P   +  +  +         E+F + ++K  E G
Sbjct: 200 LRELGMPHKLLFSLL-ISDSQPVCGKEKFEETLKKVVEMG 234

[Close]

BLAST of CmoCh12G001030 vs. TAIR10
Match: AT3G46950.1 (AT3G46950.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 82.4 bits (202), Expect = 4.2e-16
Identity = 61/233 (26.18%), Postives = 110/233 (47.21%), Query Frame = 1


Query: 16  DLQKFAGNDTTIS----------RKFLSSLSEISQSTNNR-TVDYLVHTLGFSKDSALAA 75
           +LQK+     T+S          + F S++++ S    +  TV YLV +LG +K  A   
Sbjct: 13  ELQKWRNLRVTVSIVQNAFPFTTKSFSSTIAKDSSPKGSTFTVSYLVESLGLTKKLAETI 72

Query: 76  AKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFLSRNGF 135
           +K++  +   NPDSV+ L ++ GF  S  + I    P LL+ D +  L+PK +FL   G 
Sbjct: 73  SKKVTFEDKVNPDSVLNLLRSNGFKDSQISRIIRAYPRLLVTDAEKSLRPKLQFLKSRGA 132

Query: 136 TGHVLVNVISRDPEILRRSLKKQIVPCIDFLR-IFFGSTDVIVSLFSARRGTWVLRKFSE 195
           +   ++ ++S  P IL +  ++ +    DF++ I      + +S    ++G  +      
Sbjct: 133 SSSEVIEIVSNVPTILDKKGEESVSLYYDFVKDIMQDGKSLCISCPEGKKGNRI------ 192

Query: 196 SVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAGGKQAK 237
               NI +LR  GVP   +  +   R + +    E+F + ++K  + G   AK
Sbjct: 193 ---RNISVLRELGVPQKLLFSLLISRYQPVC-GKEKFEESLKKVVDMGFDPAK 235

[Close]

BLAST of CmoCh12G001030 vs. TAIR10
Match: AT1G62085.1 (AT1G62085.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 81.3 bits (199), Expect = 9.3e-16
Identity = 55/186 (29.57%), Postives = 90/186 (48.39%), Query Frame = 1


Query: 46  TVDYLVHTLGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLL 105
           +V YLV +LG  K  A + +K++  +   NPDSV++L +++GFT S  +SI    P LL+
Sbjct: 57  SVSYLVDSLGLPKKVAESISKKVSFEDKGNPDSVLSLLRSHGFTDSQISSIITDYPQLLV 116

Query: 106 ADPDTILKPKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVI 165
           AD +  + PK +FL   G +   L +++S  PEIL +   K I    DF++    +    
Sbjct: 117 ADAEKSIGPKLQFLQSRGASRSELTHIVSTVPEILGKRGDKTISIYYDFVKEIIEADK-- 176

Query: 166 VSLFSARRGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVE 225
            S F     +       E+   N+ +LR  GVP   +  +  +         E F + ++
Sbjct: 177 SSKFEKLCHSLPEGSKQENKIRNVLVLRELGVPQRLLFPLL-ISDHQPVCGKENFEESLK 236

Query: 226 KTKEAG 232
           K  E G
Sbjct: 237 KVVEMG 239

[Close]

BLAST of CmoCh12G001030 vs. NCBI nr
Match: gi|449442098|ref|XP_004138819.1| (PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus])

HSP 1 Score: 309.7 bits (792), Expect = 4.5e-81
Identity = 159/232 (68.53%), Postives = 185/232 (79.74%), Query Frame = 1


Query: 1   MTNFLFKVPL-RLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKD 60
           M NFL K  L RL+AQDL+ FA N TTI   FLSSLS+  QSTN+RT+DYL+HT+G SKD
Sbjct: 1   MANFLRKPSLLRLYAQDLRNFAHNKTTIGLNFLSSLSQSPQSTNHRTLDYLIHTIGLSKD 60

Query: 61  SALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFL 120
           SALAAAK+IHLK +++PDSV+ALF AYGFT S TA+IFCR P LLLADPD  LKPKFEFL
Sbjct: 61  SALAAAKKIHLKPSSDPDSVLALFNAYGFTPSQTANIFCRQPRLLLADPDKTLKPKFEFL 120

Query: 121 SRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLR 180
           S+NG +G+ LV++I R+P ILRRSL K+IVPC DFL  FFGSTD IVSLF     T VL 
Sbjct: 121 SKNGISGNFLVDLICREPHILRRSLDKKIVPCFDFLINFFGSTDCIVSLFCTTHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
            FSE +APNIE+LRANGVPDS IAK+FW RP  L+RD + F+DIVEKTKE G
Sbjct: 181 TFSEFMAPNIEVLRANGVPDSSIAKLFWKRPVALSRDVKWFTDIVEKTKERG 232

[Close]

BLAST of CmoCh12G001030 vs. NCBI nr
Match: gi|778670382|ref|XP_004143080.2| (PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus])

HSP 1 Score: 305.1 bits (780), Expect = 1.1e-79
Identity = 163/232 (70.26%), Postives = 183/232 (78.88%), Query Frame = 1


Query: 1   MTNFLFKVPL-RLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKD 60
           MTNFL K  L RLFAQDL+ F  N+TTI  KFLSSLS+  QSTN+ TVDYL+HT+G SK 
Sbjct: 1   MTNFLLKPSLLRLFAQDLRDFTHNNTTIGLKFLSSLSQTPQSTNDPTVDYLIHTIGLSKA 60

Query: 61  SALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFL 120
           SALAAAK+I LK TA+PDSV+ALF AYGFT S  ASIF R P+LLLA+PDT LKPKFEFL
Sbjct: 61  SALAAAKQIRLKPTAHPDSVLALFNAYGFTPSHIASIFSRRPSLLLANPDTTLKPKFEFL 120

Query: 121 SRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLR 180
           SRNG +G+ L +VI RDP IL RSL KQIVPCIDFL  FFGSTD IVSLFS    T VL 
Sbjct: 121 SRNGISGNFLADVIDRDPLILCRSLDKQIVPCIDFLINFFGSTDCIVSLFSTAHRTRVLH 180

Query: 181 KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
            FSE VAPNIE+LRANGV DS IAK+ W+RP  L+RD E F+DIVEKT+E G
Sbjct: 181 TFSEFVAPNIEVLRANGVLDSNIAKLLWMRPIALSRDVEWFTDIVEKTRERG 232

[Close]

BLAST of CmoCh12G001030 vs. NCBI nr
Match: gi|659068543|ref|XP_008444984.1| (PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo])

HSP 1 Score: 295.8 bits (756), Expect = 6.8e-77
Identity = 159/232 (68.53%), Postives = 179/232 (77.16%), Query Frame = 1


Query: 1   MTNFLFKVPL-RLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKD 60
           M N L K  L RLFAQDLQ F  N+TTI  K LSSLS+  QSTN+RT+DYLVHT+G  KD
Sbjct: 1   MANSLLKPSLLRLFAQDLQNFTHNNTTIGLKLLSSLSQTPQSTNDRTLDYLVHTIGLPKD 60

Query: 61  SALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFL 120
           SALAAAK+  LK TA+PDSV+ALF AYGFT S  ASIF +   LLLA+PDT LKPK EFL
Sbjct: 61  SALAAAKKTRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSRLLLANPDTTLKPKLEFL 120

Query: 121 SRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLR 180
           S+NG +G++LVNVI RDP IL RSL KQIVPCIDFLR FFGSTD +V LFSA  GT VL 
Sbjct: 121 SKNGISGNLLVNVICRDPYILSRSLDKQIVPCIDFLRNFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
            FSES+APNIE+LRANGV DS IAK+  +RP  L+RD E F DIVEK KE G
Sbjct: 181 TFSESMAPNIEVLRANGVLDSNIAKMLSLRPIALSRDVENFIDIVEKAKEIG 232

[Close]

BLAST of CmoCh12G001030 vs. NCBI nr
Match: gi|659089103|ref|XP_008445328.1| (PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 2.0e-76
Identity = 157/232 (67.67%), Postives = 179/232 (77.16%), Query Frame = 1


Query: 1   MTNFLFKVPL-RLFAQDLQKFAGNDTTISRKFLSSLSEISQSTNNRTVDYLVHTLGFSKD 60
           M N L K  L R FAQDL+ F  N+TTI  KFLSSLS+  QSTN+RT DYLVHT+G  KD
Sbjct: 1   MANSLLKPSLLRPFAQDLRNFTHNNTTIGLKFLSSLSQTPQSTNDRTQDYLVHTIGLPKD 60

Query: 61  SALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILKPKFEFL 120
           SALAAAK+I LK TA+PDSV+ALF AYGFT S  ASIF +   LLLADPDT LKPK EFL
Sbjct: 61  SALAAAKKIRLKPTADPDSVLALFNAYGFTPSHIASIFSKQSCLLLADPDTTLKPKIEFL 120

Query: 121 SRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDVIVSLFSARRGTWVLR 180
           S+NG +G++L +VI RDP IL RSL KQIVPCIDFL  FFGSTD +V LFSA  GT VL 
Sbjct: 121 SKNGISGNLLADVICRDPHILHRSLDKQIVPCIDFLINFFGSTDGVVLLFSAGGGTRVLE 180

Query: 181 KFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
            FSES+APN+E+LRANGVPDS IAK+  +RP  L++D E F DIVEKTKE G
Sbjct: 181 TFSESMAPNVEVLRANGVPDSNIAKMLSLRPIALSKDVEHFIDIVEKTKEMG 232

[Close]

BLAST of CmoCh12G001030 vs. NCBI nr
Match: gi|1009119129|ref|XP_015876211.1| (PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba])

HSP 1 Score: 214.9 bits (546), Expect = 1.5e-52
Identity = 120/239 (50.21%), Postives = 157/239 (65.69%), Query Frame = 1


Query: 1   MTNFLFKVPLRLFAQDL---QKFAGNDTTISR----KFLSSLSEISQSTNNRTVDYLVHT 60
           M  FL K+PLRL    +        N   I +    K LS+LS  S S+++ TVDY +++
Sbjct: 1   MFRFLSKIPLRLPQVAIFIIPTSNANSNAIGQQLFLKSLSTLSPPSSSSSDSTVDYFINS 60

Query: 61  LGFSKDSALAAAKRIHLKTTANPDSVIALFKAYGFTLSDTASIFCRNPNLLLADPDTILK 120
           LG S DSAL AAK I  + TA  DSV+ LF+ YGF+ +  A IF R P+LLL+DP   LK
Sbjct: 61  LGLSPDSALTAAKLIRRQPTAKSDSVLELFRHYGFSSAQIADIFSRFPSLLLSDPQKNLK 120

Query: 121 PKFEFLSRNGFTGHVLVNVISRDPEILRRSLKKQIVPCIDFLRIFFGSTDV-IVSLFSAR 180
           PK EFLS+NG +G  L++++S DP IL RSL KQI PCI FL+ FF +    IVSL S +
Sbjct: 121 PKLEFLSKNGISGQALLSIVSTDPTILLRSLNKQIEPCIGFLKTFFKNNKAEIVSLLSVK 180

Query: 181 RGTWVLRKFSESVAPNIELLRANGVPDSKIAKIFWVRPRTLARDAEEFSDIVEKTKEAG 232
           RGTWV+ KFSE++APNIE LR++GV D+ I K+  VRP  L+R A++FS+ V   KE G
Sbjct: 181 RGTWVIHKFSETMAPNIETLRSHGVSDACIKKMIIVRPAALSRFADDFSEFVRVVKEMG 239

The following BLAST results are available for this feature:

BLAST of CmoCh12G001030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh12G001030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQN0_CUCSA	3.2e-81	68.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G402010 PE=4 SV=1	[more]
A0A0A0LK19_CUCSA	7.8e-80	70.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G346010 PE=4 SV=1	[more]
A0A059AAC3_EUCGR	1.3e-39	45.96	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00315 PE=4 SV=1	[more]
A0A059AB47_EUCGR	5.1e-39	46.20	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1	[more]
A0A059A9T0_EUCGR	5.1e-39	46.20	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00314 PE=4 SV=1	[more]

BLAST of CmoCh12G001030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G07900.1	2.6e-26	30.80	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	2.5e-21	30.48	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	4.2e-16	27.27	Mitochondrial transcription termination factor family protein	[more]
AT3G46950.1	4.2e-16	26.18	Mitochondrial transcription termination factor family protein	[more]
AT1G62085.1	9.3e-16	29.57	Mitochondrial transcription termination factor family protein	[more]

BLAST of CmoCh12G001030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449442098\|ref\|XP_004138819.1\|	4.5e-81	68.53	PREDICTED: uncharacterized protein LOC101219073 [Cucumis sativus]	[more]
gi\|778670382\|ref\|XP_004143080.2\|	1.1e-79	70.26	PREDICTED: uncharacterized protein LOC101214641 [Cucumis sativus]	[more]
gi\|659068543\|ref\|XP_008444984.1\|	6.8e-77	68.53	PREDICTED: uncharacterized protein LOC103488160 [Cucumis melo]	[more]
gi\|659089103\|ref\|XP_008445328.1\|	2.0e-76	67.67	PREDICTED: uncharacterized protein LOC103488393 [Cucumis melo]	[more]
gi\|1009119129\|ref\|XP_015876211.1\|	1.5e-52	50.21	PREDICTED: uncharacterized protein LOC107412900 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G001030.1	CmoCh12G001030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 81..240 score: 3.1
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 94..125 score: 0.0043coord: 130..162 score:
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..231 score: 4.1
None	No IPR available	PANTHER	PTHR13068:SF28	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN-RELATED	coord: 11..231 score: 4.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G001030	CmaCh12G001280	Cucurbita maxima (Rimu)	cmacmoB176
CmoCh12G001030	Lsi08G009300	Bottle gourd (USVL1VR-Ls)	cmolsiB176
CmoCh12G001030	Cp4.1LG07g01080	Cucurbita pepo (Zucchini)	cmocpeB174
CmoCh12G001030	CsGy2G016750	Cucumber (Gy14) v2	cgybcmoB176

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G001030	Cucurbita maxima (Rimu)	cmacmoB765
CmoCh12G001030	Wild cucumber (PI 183967)	cmocpiB184
CmoCh12G001030	Cucumber (Chinese Long) v2	cmocuB180
CmoCh12G001030	Melon (DHL92) v3.5.1	cmomeB147
CmoCh12G001030	Watermelon (Charleston Gray)	cmowcgB162
CmoCh12G001030	Watermelon (97103) v1	cmowmB135
CmoCh12G001030	Cucurbita pepo (Zucchini)	cmocpeB148
CmoCh12G001030	Cucumber (Gy14) v2	cgybcmoB704
CmoCh12G001030	Melon (DHL92) v3.6.1	cmomedB162
CmoCh12G001030	Silver-seed gourd	carcmoB0194
CmoCh12G001030	Silver-seed gourd	carcmoB0893
CmoCh12G001030	Cucumber (Chinese Long) v3	cmocucB0214
CmoCh12G001030	Watermelon (97103) v2	cmowmbB179
CmoCh12G001030	Wax gourd	cmowgoB0194
CmoCh12G001030	Wax gourd	cmowgoB0211
CmoCh12G001030	Cucurbita moschata (Rifu)	cmocmoB150
CmoCh12G001030	Cucumber (Gy14) v1	cgycmoB0089