Lsi08G007390 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G007390
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Transcription factor protein
Location	chr08 : 15738706 .. 15740297 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGAGGAAAGCCTTCTCTCTCTAATTCTCTCTCTCCTTATCTCTCTGTCTCTGCCTAAAACACTATATATACAGCTTCTCCCCATCATCTCTCTCCCATCATCTCCATAACGTCGTCGTTTTCGCTCTCTCTCTCTCTCCTTTTTCATCCCTAAAACTTAATTCCAGCCTTTTTCAAAATTTAAAATATTACAACATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACAAGGTATTCTAATTATTAAATAATCATTTTTTTTTTACTAAATATACTGACATAAATTTATATTATCAACTTCGAAACAAAAATTGACAGATTTGAAGAAGAAAGTCTAACCTCCTTGTCTTCCAAATCTTATTAATTCTCTCTCCCCACATGTCGGCTTGTGGGTCTCGTATTGTTCCCTCCTTCCACTGCCATTGCAGCTGGGATACTCCAAATTCCTCCCTTCACGTAATTTCCACATCCTCCAACTTCAATTTATTCTTCATGCCCTTCTCTACCATTAGTTTTTCAATCAACCCCTCACATTTTCTTCAAAATTAATTAATTTCTCTCAAGTCACATTGTGACGGTCTCTCTAAATCATTTTATATCTCGTCTAAAATTACTCGTCATATAGATGGTTGAACAAGAAAATTATTTTGTGCATCTCGTACTCTGAATCCATCTTTTTGTAGTCTATCAGTTTGCTACCCAATAAACTTTGTATTTTTGTTTTAATATTTTTGAGTTTTTGGTTAAAATAAATTGGAAGAAAAAAAAGATGCAGTCTAAAATATGTAATTTAGTACTTTCCCACTCTTCTTTATTCTCGATAATGGTTTCTCTCTAGCTTTGTTATTTGTTTCACATGAGTTTCTCTCTAACTCTCTCCTGTACTGATTTTGATATTGGTATGCGATATCATAAGGGTGCTAAGAATGTGTCAATATAATTAAAATATTCCGGTGTATCTACTAATCATATAGGATCTCTGGTATCTTTTTCTAGAAAAAAAATGTACTAAAAAATATTACTTGTTTTGAATTACTTTTCACTACTTGTAAAAATTGTAATGTTCTTTTATTTTATTTGTGGGTGTAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAAAACCTATAATTTATCTACCACGATTTCCCTAAGCGTTACGACGTCGTTCCTTTCTTATTTTTCATTTTCTCTCTTTATATATATTTATATATAAATATATATGTATAATAGTTAAAGTATTTAGCTAGGGCTTTTTTGGCCGATGTATTAGGCCAGTACACAGAAGGGTGCTATATTTTATATATATAACACCTCTTTTGAGCAGAGTTTGTAGTACTTTGACTTTTATAATATTCTATGAACCCAAGT

mRNA sequence

AAATGAGGAAAGCCTTCTCTCTCTAATTCTCTCTCTCCTTATCTCTCTGTCTCTGCCTAAAACACTATATATACAGCTTCTCCCCATCATCTCTCTCCCATCATCTCCATAACGTCGTCGTTTTCGCTCTCTCTCTCTCTCCTTTTTCATCCCTAAAACTTAATTCCAGCCTTTTTCAAAATTTAAAATATTACAACATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACAAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAAAACCTATAATTTATCTACCACGATTTCCCTAAGCGTTACGACGTCGTTCCTTTCTTATTTTTCATTTTCTCTCTTTATATATATTTATATATAAATATATATGTATAATAGTTAAAGTATTTAGCTAGGGCTTTTTTGGCCGATGTATTAGGCCAGTACACAGAAGGGTGCTATATTTTATATATATAACACCTCTTTTGAGCAGAGTTTGTAGTACTTTGACTTTTATAATATTCTATGAACCCAAGT

Coding sequence (CDS)

ATGTCTACCAGAAGATCCTCTCGCTCCAGAAACTCCTCAGGTGCTCCATTAATCTCTGACGATCAGATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGCTTCGTAATCCCCGCGCTTCCCACAAGGTGTCGGCTTCGAAAGTGTTACAAGAAACATGCAACTACATAAGGAACTTACATAGAGAGGTGGATGATTTAAGTGAGCGATTGTCGCAGCTTTTAGCATCAACAGAAAATGACAGTGCCGAGGCTGCGATTATTAGGAGTTTATTCATGTAA

Protein sequence

MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM

Homology

[Close]

BLAST of Lsi08G007390 vs. Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-30
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRSR S G+  ISDDQISDLVSKLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST+++SAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of Lsi08G007390 vs. Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.1e-25
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS RRS RSR SSG   IS+DQI+DL+ KLQ+L+PELR+ R S KVSA++VLQ+TCNYIR
Sbjct: 1  MSGRRS-RSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLSERLS+LLA+  +D+A+AA+IRSL
Sbjct: 61 NLHREVDDLSERLSELLAN--SDTAQAALIRSL 90

[Close]

BLAST of Lsi08G007390 vs. Swiss-Prot
Match: PRE1_ARATH (Transcription factor PRE1 OS=Arabidopsis thaliana GN=PRE1 PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.4e-25
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 8  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVD 67
          RSR SS AP ISD+Q+ DLVSKL++++PE+   R S K SASKVLQETCNYIRNL+REVD
Sbjct: 5  RSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVD 64

Query: 68 DLSERLSQLLASTENDSAEAAIIRSLFM 96
          +LSERLSQLL S + DS EAA+IRSL M
Sbjct: 65 NLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lsi08G007390 vs. Swiss-Prot
Match: PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 9.0e-25
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 8  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVD 67
          RSR +S A  ISDDQ+ DLVSKL++ +PE+   R S KVSASKVLQETCNYIR LHREVD
Sbjct: 5  RSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVD 64

Query: 68 DLSERLSQLLASTENDSAEAAIIRSLFM 96
          +LS+RLSQLL S + DS EAA+IRSL M
Sbjct: 65 NLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lsi08G007390 vs. Swiss-Prot
Match: PRE4_ARATH (Transcription factor PRE4 OS=Arabidopsis thaliana GN=PRE4 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-23
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 5  RSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHR 64
          R SRSR + GA +I+D+QI+DLV +L RL+PEL N R S KVSAS+VLQETC+YIRNL +
Sbjct: 4  RKSRSRQT-GASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSK 63

Query: 65 EVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          EVDDLSERLSQLL ST  DSA+AA+IRSL M
Sbjct: 64 EVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]

BLAST of Lsi08G007390 vs. TrEMBL
Match: A0A0A0KDL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404200 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 9.3e-37
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYI 60
          MS+RRSSRSRNS+ A PLISDDQI+DLVSKLQRLIPELRNPRASHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          RNLHREVDDLSERLSQLLA+TENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of Lsi08G007390 vs. TrEMBL
Match: A0A0D3DR75_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.5e-29
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRS   SG+  ISDDQISDLV+KLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSSRQSGSSRISDDQISDLVTKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST++DSAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDDSAEAAIIRSL 92

[Close]

BLAST of Lsi08G007390 vs. TrEMBL
Match: W9R9Q5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021126 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSS SR S  +  ISDDQI+DLVSKLQRLIPE+RN R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSS-SRQSGVSMNISDDQITDLVSKLQRLIPEIRN-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          NLHREVDDLS+RLSQLLA+TENDSA+AAIIRSL M
Sbjct: 61 NLHREVDDLSDRLSQLLATTENDSAQAAIIRSLLM 93

[Close]

BLAST of Lsi08G007390 vs. TrEMBL
Match: A0A078IAZ4_BRANA (BnaA08g20020D protein OS=Brassica napus GN=BnaA08g20020D PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRSR S G+  ISDDQISDLV+KLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVTKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST++DSAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDDSAEAAIIRSL 91

[Close]

BLAST of Lsi08G007390 vs. TrEMBL
Match: M4DIH2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.1e-28
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRSR S G+  ISDDQISDLV+KLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVTKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST++DSAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDDSAEAAIIRSL 91

[Close]

BLAST of Lsi08G007390 vs. TAIR10
Match: AT1G26945.1 (AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-31
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRSR S G+  ISDDQISDLVSKLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST+++SAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]

BLAST of Lsi08G007390 vs. TAIR10
Match: AT1G74500.1 (AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 117.1 bits (292), Expect = 6.0e-27
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS RRS RSR SSG   IS+DQI+DL+ KLQ+L+PELR+ R S KVSA++VLQ+TCNYIR
Sbjct: 1  MSGRRS-RSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLSERLS+LLA+  +D+A+AA+IRSL
Sbjct: 61 NLHREVDDLSERLSELLAN--SDTAQAALIRSL 90

[Close]

BLAST of Lsi08G007390 vs. TAIR10
Match: AT5G39860.1 (AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 115.9 bits (289), Expect = 1.3e-26
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 8  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVD 67
          RSR SS AP ISD+Q+ DLVSKL++++PE+   R S K SASKVLQETCNYIRNL+REVD
Sbjct: 5  RSRQSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNLNREVD 64

Query: 68 DLSERLSQLLASTENDSAEAAIIRSLFM 96
          +LSERLSQLL S + DS EAA+IRSL M
Sbjct: 65 NLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lsi08G007390 vs. TAIR10
Match: AT3G28857.1 (AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 114.0 bits (284), Expect = 5.1e-26
Identity = 61/88 (69.32%), Postives = 71/88 (80.68%), Query Frame = 1


Query: 8  RSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHREVD 67
          RSR +S A  ISDDQ+ DLVSKL++ +PE+   R S KVSASKVLQETCNYIR LHREVD
Sbjct: 5  RSRQTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKLHREVD 64

Query: 68 DLSERLSQLLASTENDSAEAAIIRSLFM 96
          +LS+RLSQLL S + DS EAA+IRSL M
Sbjct: 65 NLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lsi08G007390 vs. TAIR10
Match: AT3G47710.1 (AT3G47710.1 BANQUO 3)

HSP 1 Score: 110.2 bits (274), Expect = 7.3e-25
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 5  RSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIRNLHR 64
          R SRSR + GA +I+D+QI+DLV +L RL+PEL N R S KVSAS+VLQETC+YIRNL +
Sbjct: 4  RKSRSRQT-GASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLSK 63

Query: 65 EVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          EVDDLSERLSQLL ST  DSA+AA+IRSL M
Sbjct: 64 EVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]

BLAST of Lsi08G007390 vs. NCBI nr
Match: gi|659131248|ref|XP_008465587.1| (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-37
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYI 60
          MS+RRSSRSRNSS + PLISDDQI+DLVSKLQRLIPELRNPRASHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          RNLHREVDDLSERLSQLLA+TENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]

BLAST of Lsi08G007390 vs. NCBI nr
Match: gi|449458023|ref|XP_004146747.1| (PREDICTED: transcription factor PRE6-like [Cucumis sativus])

HSP 1 Score: 160.6 bits (405), Expect = 1.3e-36
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGA-PLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYI 60
          MS+RRSSRSRNS+ A PLISDDQI+DLVSKLQRLIPELRNPRASHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          RNLHREVDDLSERLSQLLA+TENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]

BLAST of Lsi08G007390 vs. NCBI nr
Match: gi|922548525|ref|XP_013602228.1| (PREDICTED: transcription factor PRE6 [Brassica oleracea var. oleracea])

HSP 1 Score: 134.8 bits (338), Expect = 7.9e-29
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRS   SG+  ISDDQISDLV+KLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSSRQSGSSRISDDQISDLVTKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST++DSAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDDSAEAAIIRSL 92

[Close]

BLAST of Lsi08G007390 vs. NCBI nr
Match: gi|703098439|ref|XP_010096378.1| (hypothetical protein L484_021126 [Morus notabilis])

HSP 1 Score: 133.7 bits (335), Expect = 1.8e-28
Identity = 78/95 (82.11%), Postives = 85/95 (89.47%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSS SR S  +  ISDDQI+DLVSKLQRLIPE+RN R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSS-SRQSGVSMNISDDQITDLVSKLQRLIPEIRN-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSLFM 96
          NLHREVDDLS+RLSQLLA+TENDSA+AAIIRSL M
Sbjct: 61 NLHREVDDLSDRLSQLLATTENDSAQAAIIRSLLM 93

[Close]

BLAST of Lsi08G007390 vs. NCBI nr
Match: gi|685348677|ref|XP_009110054.1| (PREDICTED: transcription factor PRE6 [Brassica rapa])

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1


Query: 1  MSTRRSSRSRNSSGAPLISDDQISDLVSKLQRLIPELRNPRASHKVSASKVLQETCNYIR 60
          MS+RRSSRSR S G+  ISDDQISDLV+KLQ LIPELR  R S KVSASKVLQETCNYIR
Sbjct: 1  MSSRRSSRSRQS-GSSRISDDQISDLVTKLQHLIPELRR-RRSDKVSASKVLQETCNYIR 60

Query: 61 NLHREVDDLSERLSQLLASTENDSAEAAIIRSL 94
          NLHREVDDLS+RLS+LLAST++DSAEAAIIRSL
Sbjct: 61 NLHREVDDLSDRLSELLASTDDDSAEAAIIRSL 91

The following BLAST results are available for this feature:

BLAST of Lsi08G007390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PRE6_ARATH	3.2e-30	82.80	Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1	[more]
PRE3_ARATH	1.1e-25	70.97	Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1	[more]
PRE1_ARATH	2.4e-25	70.45	Transcription factor PRE1 OS=Arabidopsis thaliana GN=PRE1 PE=1 SV=1	[more]
PRE5_ARATH	9.0e-25	69.32	Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1	[more]
PRE4_ARATH	1.3e-23	70.33	Transcription factor PRE4 OS=Arabidopsis thaliana GN=PRE4 PE=1 SV=1	[more]

BLAST of Lsi08G007390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDL6_CUCSA	9.3e-37	90.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404200 PE=4 SV=1	[more]
A0A0D3DR75_BRAOL	5.5e-29	81.72	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
W9R9Q5_9ROSA	1.2e-28	82.11	Uncharacterized protein OS=Morus notabilis GN=L484_021126 PE=4 SV=1	[more]
A0A078IAZ4_BRANA	2.1e-28	82.80	BnaA08g20020D protein OS=Brassica napus GN=BnaA08g20020D PE=4 SV=1	[more]
M4DIH2_BRARP	2.1e-28	82.80	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]

BLAST of Lsi08G007390 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G26945.1	1.8e-31	82.80	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT1G74500.1	6.0e-27	70.97	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT5G39860.1	1.3e-26	70.45	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G28857.1	5.1e-26	69.32	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT3G47710.1	7.3e-25	70.33	BANQUO 3	[more]

BLAST of Lsi08G007390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659131248\|ref\|XP_008465587.1\|	3.5e-37	91.67	PREDICTED: transcription factor PRE6-like [Cucumis melo]	[more]
gi\|449458023\|ref\|XP_004146747.1\|	1.3e-36	90.63	PREDICTED: transcription factor PRE6-like [Cucumis sativus]	[more]
gi\|922548525\|ref\|XP_013602228.1\|	7.9e-29	81.72	PREDICTED: transcription factor PRE6 [Brassica oleracea var. oleracea]	[more]
gi\|703098439\|ref\|XP_010096378.1\|	1.8e-28	82.11	hypothetical protein L484_021126 [Morus notabilis]	[more]
gi\|685348677\|ref\|XP_009110054.1\|	3.0e-28	82.80	PREDICTED: transcription factor PRE6 [Brassica rapa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi08G007390.1	Lsi08G007390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	G3DSA:4.10.280.10		coord: 21..77 score: 1.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 21..62 score: 5.
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROFILE	PS50888	BHLH	coord: 7..62 score: 10
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	unknown	SSF47459	HLH, helix-loop-helix DNA-binding domain	coord: 21..79 score: 4.5
None	No IPR available	unknown	Coil	Coil	coord: 59..79 scor
None	No IPR available	PANTHER	PTHR12565	STEROL REGULATORY ELEMENT-BINDING PROTEIN	coord: 1..95 score: 4.7
None	No IPR available	PANTHER	PTHR12565:SF172	BHLH TRANSCRIPTION FACTOR PRE1-RELATED	coord: 1..95 score: 4.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi08G007390	Csa6G404200	Cucumber (Chinese Long) v2	culsiB479
Lsi08G007390	CSPI06G21200	Wild cucumber (PI 183967)	cpilsiB488
Lsi08G007390	Cucsa.005490	Cucumber (Gy14) v1	cgylsiB054
Lsi08G007390	CmaCh12G006960	Cucurbita maxima (Rimu)	cmalsiB186
Lsi08G007390	CmaCh05G009370	Cucurbita maxima (Rimu)	cmalsiB738
Lsi08G007390	CmoCh05G009560	Cucurbita moschata (Rifu)	cmolsiB729
Lsi08G007390	Cla021887	Watermelon (97103) v1	lsiwmB465
Lsi08G007390	ClCG08G008910	Watermelon (Charleston Gray)	lsiwcgB438
Lsi08G007390	Cla97C08G151720	Watermelon (97103) v2	lsiwmbB444
Lsi08G007390	Bhi04G001011	Wax gourd	lsiwgoB611
Lsi08G007390	Cp4.1LG11g07320	Cucurbita pepo (Zucchini)	cpelsiB099
Lsi08G007390	CsGy6G020450	Cucumber (Gy14) v2	cgyblsiB445
Lsi08G007390	Carg17633	Silver-seed gourd	carlsiB121
Lsi08G007390	CsaV3_6G036240	Cucumber (Chinese Long) v3	cuclsiB510

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi08G007390	Wax gourd	lsiwgoB594
Lsi08G007390	Cucurbita maxima (Rimu)	cmalsiB190
Lsi08G007390	Cucurbita moschata (Rifu)	cmolsiB180
Lsi08G007390	Cucurbita pepo (Zucchini)	cpelsiB692
Lsi08G007390	Melon (DHL92) v3.5.1	lsimeB470
Lsi08G007390	Cucumber (Gy14) v2	cgyblsiB451
Lsi08G007390	Melon (DHL92) v3.6.1	lsimedB490
Lsi08G007390	Silver-seed gourd	carlsiB120
Lsi08G007390	Cucumber (Chinese Long) v3	cuclsiB516
Lsi08G007390	Watermelon (97103) v2	lsiwmbB448