Cp4.1LG11g07320 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG11g07320
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionTranscription factor protein
LocationCp4.1LG11 : 6037674 .. 6038776 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTAGCCGAAGATCCTCGCGTTCCAGAAACACCTCAGGGGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCGCAATACTCGTTCCCATAAGGTAATTAATAAAAATCCCTTTTTTTTTTTCTTTTTTTTTTTTTCTTTTTTCTACCGAGCTTATTAACTCTCTCTGCCGACATGTCGGCTTGTGGGTCTCCTTTTGTTTCCCTTCCACCAGCATTGCAGCTGGGGGAGTTTTTGATTTTATACCCCAAATTCTCCCCCCTCCCTTACTAACTATCTGATGAAAGTCCCACCTCGGTTAGTTTAGGGAATAATCATGGGTTTATAAACAAAGAATACTCTCTTCACTAGTGTGAGGCCTTGTAAGGAAGCTCAAAGTGAACAATATCATACCATTGTGGAGAGTCGTGTTCGTTTAACACATATGACTCGATGACTAAACTAATCTTAGTAACCCAATTCGGTCATATGATTCGATTCAGTTTGCAAATTGACATGTTATTGGTCGAGTCATCACTAATTCGAAAATAGGGTTACAATTTAACCTAACCCAACTCTATTTTTGAAAAGATTAAGGTTATAATCCTATTTTCGGACCAGTAGGGTTGACTCCTGATTTCATTGATCAAAATTCAACCTAACCCAACTCCATTTTTGAAAAGATTAAGGTTATAAAACATATATTTGAAATTTAAGAGATTTTAGTTATTAATATAATATATATTGCAAATAAATATCGACAACTCAACAATACCGAGCTTGAGAGTTAAGTTGAGTTGTGAACTCTATTCAAGTTGTTCGGGTCACTAATTGAACTTAACCCAATCAACCCGAATACACTCTTGTATATTGAATAGTTTCGATTAATTTAAATCGAAAACTCGTAACGTTATTTGATTTGATTTATTGGTATAGGTATCGGCTTCAAAAGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGCTTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA

mRNA sequence

ATGTCTAGCCGAAGATCCTCGCGTTCCAGAAACACCTCAGGGGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCGCAATACTCGTTCCCATAAGGTATCGGCTTCAAAAGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGCTTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA

Coding sequence (CDS)

ATGTCTAGCCGAAGATCCTCGCGTTCCAGAAACACCTCAGGGGCTCAAATCTCTGACGACCAAATCAGTGATCTTGTTTCCAAGTTGCAGCGCCTCATCCCTGAGATTCGCAATACTCGTTCCCATAAGGTATCGGCTTCAAAAGTGCTGCAAGAAACATGCAACTACATAAGGAACTTACATAGGGAAGTGGATGATTTAAGTGAGCGATTGTCACAGCTTTTAGCAGCAACAGAAAACGACAGCGCTGAGGCAGCGATTATTAGGAGTTTATTCATGTAA

Protein sequence

MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM
Homology
[Close]
BLAST of Cp4.1LG11g07320 vs. Swiss-Prot
Match: PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.3e-31
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]
BLAST of Cp4.1LG11g07320 vs. Swiss-Prot
Match: ILI6_ORYSJ (Transcription factor ILI6 OS=Oryza sativa subsp. japonica GN=ILI6 PE=1 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.7e-24
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRS RSR +  ++I+D+QISDLVSKLQ L+PE R   + +V +S+VLQETCNYIR+L
Sbjct: 1  MSSRRS-RSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          H+EVDDLSERLS+LLA ++  SA+AAIIRSL M
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]
BLAST of Cp4.1LG11g07320 vs. Swiss-Prot
Match: ILI6_ORYSI (Transcription factor ILI6 OS=Oryza sativa subsp. indica GN=ILI6 PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 9.7e-24
Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRS RSR +  ++I+D+QISDLVSKLQ L+PE R   + +V +S+VLQETCNYIR+L
Sbjct: 1  MSSRRS-RSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          H+EVDDLSERLS+LLA ++  SA+AAIIRSL M
Sbjct: 61 HQEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]
BLAST of Cp4.1LG11g07320 vs. Swiss-Prot
Match: PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-23
Identity = 64/93 (68.82%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSG-AQISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIR 60
          MS RRS RSR +SG ++IS+DQI+DL+ KLQ+L+PE+R++R S KVSA++VLQ+TCNYIR
Sbjct: 1  MSGRRS-RSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NLHREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          NLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Sbjct: 61 NLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]
BLAST of Cp4.1LG11g07320 vs. Swiss-Prot
Match: PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 6.3e-23
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRN 60
          MS+RRS ++ N S  +ISDDQ+ DLVSKL++ +PEI   R S KVSASKVLQETCNYIR 
Sbjct: 1  MSNRRSRQTSNAS--RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Cp4.1LG11g07320 vs. TrEMBL
Match: A0A0A0KDL6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404200 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.0e-32
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]
BLAST of Cp4.1LG11g07320 vs. TrEMBL
Match: W9R9Q5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021126 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 3.7e-30
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSS  ++     ISDDQI+DLVSKLQRLIPEIRN RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSSRQSGVSMNISDDQITDLVSKLQRLIPEIRNRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          HREVDDLS+RLSQLLA TENDSA+AAIIRSL M
Sbjct: 61 HREVDDLSDRLSQLLATTENDSAQAAIIRSLLM 93

[Close]
BLAST of Cp4.1LG11g07320 vs. TrEMBL
Match: A0A087HR50_ARAAL (Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G280300 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.3e-30
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLVSKLQ LIPEIR  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPEIRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]
BLAST of Cp4.1LG11g07320 vs. TrEMBL
Match: A0A078IAZ4_BRANA (BnaA08g20020D protein OS=Brassica napus GN=BnaA08g20020D PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.3e-30
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLV+KLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVTKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T++DSAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDDSAEAAIIRSL 91

[Close]
BLAST of Cp4.1LG11g07320 vs. TrEMBL
Match: M4DIH2_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 8.3e-30
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLV+KLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVTKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T++DSAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDDSAEAAIIRSL 91

[Close]
BLAST of Cp4.1LG11g07320 vs. TAIR10
Match: AT1G26945.1 (AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 7.1e-33
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLVSKLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]
BLAST of Cp4.1LG11g07320 vs. TAIR10
Match: AT1G74500.1 (AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-24
Identity = 64/93 (68.82%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSG-AQISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIR 60
          MS RRS RSR +SG ++IS+DQI+DL+ KLQ+L+PE+R++R S KVSA++VLQ+TCNYIR
Sbjct: 1  MSGRRS-RSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIR 60

Query: 61 NLHREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          NLHREVDDLSERLS+LLA   +D+A+AA+IRSL
Sbjct: 61 NLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]
BLAST of Cp4.1LG11g07320 vs. TAIR10
Match: AT3G28857.1 (AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 107.8 bits (268), Expect = 3.6e-24
Identity = 63/94 (67.02%), Postives = 76/94 (80.85%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRN 60
          MS+RRS ++ N S  +ISDDQ+ DLVSKL++ +PEI   R S KVSASKVLQETCNYIR 
Sbjct: 1  MSNRRSRQTSNAS--RISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRK 60

Query: 61 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          LHREVD+LS+RLSQLL + + DS EAA+IRSL M
Sbjct: 61 LHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Cp4.1LG11g07320 vs. TAIR10
Match: AT3G47710.1 (AT3G47710.1 BANQUO 3)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-23
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1 

Query: 3  SRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYIRNLH 62
          S R SRSR T  + I+D+QI+DLV +L RL+PE+ N R S KVSAS+VLQETC+YIRNL 
Sbjct: 2  SSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNLS 61

Query: 63 REVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          +EVDDLSERLSQLL +T  DSA+AA+IRSL M
Sbjct: 62 KEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]
BLAST of Cp4.1LG11g07320 vs. TAIR10
Match: AT5G39860.1 (AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 106.3 bits (264), Expect = 1.0e-23
Identity = 62/94 (65.96%), Postives = 78/94 (82.98%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEI-RNTRSHKVSASKVLQETCNYIRN 60
          MS+RRS +S  +S  +ISD+Q+ DLVSKL++++PEI +  RS K SASKVLQETCNYIRN
Sbjct: 1  MSNRRSRQS--SSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRN 60

Query: 61 LHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          L+REVD+LSERLSQLL + + DS EAA+IRSL M
Sbjct: 61 LNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]
BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: gi|659131248|ref|XP_008465587.1| (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-32
Identity = 84/96 (87.50%), Postives = 90/96 (93.75%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN+S +   ISDDQI+DLVSKLQRLIPE+RN R SHKVSAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]
BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: gi|449458023|ref|XP_004146747.1| (PREDICTED: transcription factor PRE6-like [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 4.4e-32
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60
          MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]
BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: gi|703098439|ref|XP_010096378.1| (hypothetical protein L484_021126 [Morus notabilis])

HSP 1 Score: 138.7 bits (348), Expect = 5.3e-30
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSS  ++     ISDDQI+DLVSKLQRLIPEIRN RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSSRQSGVSMNISDDQITDLVSKLQRLIPEIRNRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSLFM 94
          HREVDDLS+RLSQLLA TENDSA+AAIIRSL M
Sbjct: 61 HREVDDLSDRLSQLLATTENDSAQAAIIRSLLM 93

[Close]
BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: gi|674251837|gb|KFK44602.1| (hypothetical protein AALP_AA1G280300 [Arabis alpina])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 75/91 (82.42%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLVSKLQ LIPEIR  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPEIRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T+++SAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]
BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match: gi|685348677|ref|XP_009110054.1| (PREDICTED: transcription factor PRE6 [Brassica rapa])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-29
Identity = 74/91 (81.32%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MSSRRSSRSRNTSGAQISDDQISDLVSKLQRLIPEIRNTRSHKVSASKVLQETCNYIRNL 60
          MSSRRSSRSR +  ++ISDDQISDLV+KLQ LIPE+R  RS KVSASKVLQETCNYIRNL
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVTKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSQLLAATENDSAEAAIIRSL 92
          HREVDDLS+RLS+LLA+T++DSAEAAIIRSL
Sbjct: 61 HREVDDLSDRLSELLASTDDDSAEAAIIRSL 91

The following BLAST results are available for this feature:
BLAST of Cp4.1LG11g07320 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PRE6_ARATH1.3e-3181.32Transcription factor PRE6 OS=Arabidopsis thaliana GN=PRE6 PE=1 SV=1[more]
ILI6_ORYSJ9.7e-2466.67Transcription factor ILI6 OS=Oryza sativa subsp. japonica GN=ILI6 PE=1 SV=1[more]
ILI6_ORYSI9.7e-2466.67Transcription factor ILI6 OS=Oryza sativa subsp. indica GN=ILI6 PE=3 SV=1[more]
PRE3_ARATH6.3e-2368.82Transcription factor PRE3 OS=Arabidopsis thaliana GN=PRE3 PE=1 SV=1[more]
PRE5_ARATH6.3e-2367.02Transcription factor PRE5 OS=Arabidopsis thaliana GN=PRE5 PE=1 SV=1[more]
BLAST of Cp4.1LG11g07320 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDL6_CUCSA3.0e-3286.46Uncharacterized protein OS=Cucumis sativus GN=Csa_6G404200 PE=4 SV=1[more]
W9R9Q5_9ROSA3.7e-3082.80Uncharacterized protein OS=Morus notabilis GN=L484_021126 PE=4 SV=1[more]
A0A087HR50_ARAAL8.3e-3082.42Uncharacterized protein OS=Arabis alpina GN=AALP_AA1G280300 PE=4 SV=1[more]
A0A078IAZ4_BRANA8.3e-3081.32BnaA08g20020D protein OS=Brassica napus GN=BnaA08g20020D PE=4 SV=1[more]
M4DIH2_BRARP8.3e-3081.32Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
BLAST of Cp4.1LG11g07320 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26945.17.1e-3381.32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT1G74500.13.6e-2468.82 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
AT3G28857.13.6e-2467.02 basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT3G47710.11.0e-2367.39 BANQUO 3[more]
AT5G39860.11.0e-2365.96 basic helix-loop-helix (bHLH) DNA-binding family protein[more]
BLAST of Cp4.1LG11g07320 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659131248|ref|XP_008465587.1|1.1e-3287.50PREDICTED: transcription factor PRE6-like [Cucumis melo][more]
gi|449458023|ref|XP_004146747.1|4.4e-3286.46PREDICTED: transcription factor PRE6-like [Cucumis sativus][more]
gi|703098439|ref|XP_010096378.1|5.3e-3082.80hypothetical protein L484_021126 [Morus notabilis][more]
gi|674251837|gb|KFK44602.1|1.2e-2982.42hypothetical protein AALP_AA1G280300 [Arabis alpina][more]
gi|685348677|ref|XP_009110054.1|1.2e-2981.32PREDICTED: transcription factor PRE6 [Brassica rapa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009416 response to light stimulus
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG11g07320.1Cp4.1LG11g07320.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainGENE3DG3DSA:4.10.280.10coord: 20..74
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 20..60
score: 1.
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROFILEPS50888BHLHcoord: 6..60
score: 10
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainunknownSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 20..77
score: 1.9
NoneNo IPR availableunknownCoilCoilcoord: 57..77
scor
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 3..93
score: 1.5
NoneNo IPR availablePANTHERPTHR12565:SF148PROTEIN BANQUO 3coord: 3..93
score: 1.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG11g07320Cucsa.005490Cucumber (Gy14) v1cgycpeB0088
Cp4.1LG11g07320CmaCh05G009370Cucurbita maxima (Rimu)cmacpeB767
Cp4.1LG11g07320CmoCh05G009560Cucurbita moschata (Rifu)cmocpeB721
Cp4.1LG11g07320Cla021887Watermelon (97103) v1cpewmB100
Cp4.1LG11g07320Csa6G404200Cucumber (Chinese Long) v2cpecuB121
Cp4.1LG11g07320ClCG08G008910Watermelon (Charleston Gray)cpewcgB123
Cp4.1LG11g07320CSPI06G21200Wild cucumber (PI 183967)cpecpiB119
Cp4.1LG11g07320Lsi08G007390Bottle gourd (USVL1VR-Ls)cpelsiB099
Cp4.1LG11g07320CsaV3_6G036240Cucumber (Chinese Long) v3cpecucB0135
Cp4.1LG11g07320CsGy6G020450Cucumber (Gy14) v2cgybcpeB717
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG11g07320Cucurbita pepo (Zucchini)cpecpeB149
Cp4.1LG11g07320Cucurbita maxima (Rimu)cmacpeB181
Cp4.1LG11g07320Cucurbita moschata (Rifu)cmocpeB155
Cp4.1LG11g07320Melon (DHL92) v3.5.1cpemeB090
Cp4.1LG11g07320Melon (DHL92) v3.6.1cpemedB113
Cp4.1LG11g07320Silver-seed gourdcarcpeB0191