CsGy6G020450 (gene) Cucumber (Gy14) v2

Overview
NameCsGy6G020450
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v2)
Descriptiontranscription factor PRE6-like
LocationChr6 : 21221006 .. 21221995 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGTAATTTAAAACACCAGCATATACTTTAACTACCATAAAAGAATGAAAGTCATCCTTGGTCTGGTTTTTGCTTATGATCTTCTTCCTTTCTGTTTCCAAAATGGTTATTAAATTTTGTCTCCCCACATGTCGGGTTGTGGGTCTCACACTGTTCCCTCCTTCCACTGCCAATGCAGCTGGGGATACTCCAAATTCCCCCCTCCACACACCCCTCCTATTTCAATTTATTATTATTCTTCATATAATACCCTTTCATAGTACTATTCATTTTTCAATCACTCCCTTATATATATGTATATATATATAGATTTCAAAATCTATCCACTTCTAATAATAATAAAGAAAAAATTAAACTTACTAAGATAACAGTTTGAATTTTCTCTTTACTGTATATGCAAAAAGATGACCGATAAATCTCTCTCACGAGCTACATTGGGGCAGTCTCTCAAAATTACAATGATCCCTTTGTAAAAGATTTTTCCAGTTTTCATTTCTAGTGTAAAATCACATGAATGACTTAAAAAAATACTTGTGTGCATCTTGGCCCTGCACTAGATTCCACTAAAACGAGAGAGAGAGAGAGAGTAATATTAAGTTGTGGTGCATCGATTGGTTTTAAAAAAGAAAATTAGCTTGGAAAGGAATAGTTCTCAGGTGTTGTAAAAAGTTTGTAATGATGTTTAAATTTGATGGGTGTAGGCATCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAA

mRNA sequence

ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCATCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAA

Coding sequence (CDS)

ATGTCTTCAAGAAGATCTTCTCGCTCCAGAAACTCCACGGCTGCTTCTCCATTAATCTCCGACGATCAAATCGCTGATCTTGTTTCTAAGTTGCAACGTCTCATACCCGAGCTTCGTAATCCCCGTGCCTCCCACAAGGCATCGGCTTCAAGAGTGCTACAAGAAACATGCAACTACATAAGGAACTTACACAGAGAAGTGGATGATTTAAGCGAGAGATTGTCACAACTTTTGGCAGCAACCGAAAACGACAGCGCCGAGGCTACCATTATTAGGAGTTTATTTATGTAA

Protein sequence

MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Homology
[Close]
BLAST of CsGy6G020450 vs. NCBI nr
Match: XP_004146747.1 (PREDICTED: transcription factor PRE6-like [Cucumis sativus] >KGN47805.1 hypothetical protein Csa_6G404200 [Cucumis sativus])

HSP 1 Score: 176.8 bits (447), Expect = 3.5e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]
BLAST of CsGy6G020450 vs. NCBI nr
Match: XP_008465587.1 (PREDICTED: transcription factor PRE6-like [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 5.7e-39
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]
BLAST of CsGy6G020450 vs. NCBI nr
Match: XP_022946595.1 (transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcription factor PRE6-like [Cucurbita maxima] >XP_022999785.1 transcription factor PRE6-like [Cucurbita maxima])

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-32
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]
BLAST of CsGy6G020450 vs. NCBI nr
Match: XP_023546056.1 (transcription factor PRE6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.0 bits (367), Expect = 6.7e-32
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRN++ A   ISDDQI+DLVSKLQRLIPE+RN R SHK SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNTSGAQ--ISDDQISDLVSKLQRLIPEIRNTR-SHKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFM 93

[Close]
BLAST of CsGy6G020450 vs. NCBI nr
Match: XP_022151333.1 (transcription factor PRE6-like [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 6.3e-30
Identity = 79/96 (82.29%), Postives = 86/96 (89.58%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS + S  ISDD+IADLVSKLQRLIPE+RN R S K +AS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRNSASISAHISDDEIADLVSKLQRLIPEIRN-RRSDKVAASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          R+LH+EVDDLSERLSQLLAATEN SAEA IIRSLFM
Sbjct: 61 RSLHQEVDDLSERLSQLLAATENGSAEAAIIRSLFM 95

[Close]
BLAST of CsGy6G020450 vs. TAIR10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein)

HSP 1 Score: 123.6 bits (309), Expect = 6.5e-29
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSR S   S  ISDDQI+DLVSKLQ LIPELR  R S K SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLS+RLS+LLA+T+++SAEA IIRSL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]
BLAST of CsGy6G020450 vs. TAIR10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 108.2 bits (269), Expect = 2.8e-24
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS +S    +++P ISD+Q+ DLVSKL++++PE+   R S KASAS+VLQETCNYI
Sbjct: 1  MSNRRSRQS----SSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNL+REVD+LSERLSQLL + + DS EA +IRSL M
Sbjct: 61 RNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]
BLAST of CsGy6G020450 vs. TAIR10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1)

HSP 1 Score: 107.1 bits (266), Expect = 6.3e-24
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS RR SRSR S+  S  IS+DQI DL+ KLQ+L+PELR+ R S K SA+RVLQ+TCNYI
Sbjct: 1  MSGRR-SRSRQSSGTS-RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLSERLS+LLA   +D+A+A +IRSL
Sbjct: 61 RNLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]
BLAST of CsGy6G020450 vs. TAIR10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein)

HSP 1 Score: 105.5 bits (262), Expect = 1.8e-23
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS ++ N++     ISDDQ+ DLVSKL++ +PE+   R S K SAS+VLQETCNYI
Sbjct: 1  MSNRRSRQTSNASR----ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          R LHREVD+LS+RLSQLL + + DS EA +IRSL M
Sbjct: 61 RKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of CsGy6G020450 vs. TAIR10
Match: AT3G47710.1 (BANQUO 3)

HSP 1 Score: 103.2 bits (256), Expect = 9.0e-23
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 3  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRN 62
          S R SRSR + A+  +I+D+QI DLV +L RL+PEL N R S K SASRVLQETC+YIRN
Sbjct: 2  SSRKSRSRQTGAS--MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 61

Query: 63 LHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          L +EVDDLSERLSQLL +T  DSA+A +IRSL M
Sbjct: 62 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]
BLAST of CsGy6G020450 vs. Swiss-Prot
Match: sp|Q8GW32|PRE6_ARATH (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-27
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSR S   S  ISDDQI+DLVSKLQ LIPELR  R S K SAS+VLQETCNYI
Sbjct: 1  MSSRRSSRSRQS--GSSRISDDQISDLVSKLQHLIPELRR-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLS+RLS+LLA+T+++SAEA IIRSL
Sbjct: 61 RNLHREVDDLSDRLSELLASTDDNSAEAAIIRSL 91

[Close]
BLAST of CsGy6G020450 vs. Swiss-Prot
Match: sp|Q9FLE9|PRE1_ARATH (Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.1e-23
Identity = 60/96 (62.50%), Postives = 78/96 (81.25%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS +S    +++P ISD+Q+ DLVSKL++++PE+   R S KASAS+VLQETCNYI
Sbjct: 1  MSNRRSRQS----SSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNL+REVD+LSERLSQLL + + DS EA +IRSL M
Sbjct: 61 RNLNREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

[Close]
BLAST of CsGy6G020450 vs. Swiss-Prot
Match: sp|Q9CA64|PRE3_ARATH (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-22
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS RR SRSR S+  S  IS+DQI DL+ KLQ+L+PELR+ R S K SA+RVLQ+TCNYI
Sbjct: 1  MSGRR-SRSRQSSGTS-RISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSL 95
          RNLHREVDDLSERLS+LLA   +D+A+A +IRSL
Sbjct: 61 RNLHREVDDLSERLSELLA--NSDTAQAALIRSL 90

[Close]
BLAST of CsGy6G020450 vs. Swiss-Prot
Match: sp|Q9LJX1|PRE5_ARATH (Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.3e-22
Identity = 58/96 (60.42%), Postives = 74/96 (77.08%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MS+RRS ++ N++     ISDDQ+ DLVSKL++ +PE+   R S K SAS+VLQETCNYI
Sbjct: 1  MSNRRSRQTSNASR----ISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          R LHREVD+LS+RLSQLL + + DS EA +IRSL M
Sbjct: 61 RKLHREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]
BLAST of CsGy6G020450 vs. Swiss-Prot
Match: sp|F4JCN9|PRE4_ARATH (Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.6e-21
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0 

Query: 3  SRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYIRN 62
          S R SRSR + A+  +I+D+QI DLV +L RL+PEL N R S K SASRVLQETC+YIRN
Sbjct: 2  SSRKSRSRQTGAS--MITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRN 61

Query: 63 LHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          L +EVDDLSERLSQLL +T  DSA+A +IRSL M
Sbjct: 62 LSKEVDDLSERLSQLLEST--DSAQAALIRSLLM 91

[Close]
BLAST of CsGy6G020450 vs. TrEMBL
Match: tr|A0A0A0KDL6|A0A0A0KDL6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-41
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 96

[Close]
BLAST of CsGy6G020450 vs. TrEMBL
Match: tr|A0A1S3CPL2|A0A1S3CPL2_CUCME (transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 3.7e-39
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSSRSRNS+A+SPLISDDQIADLVSKLQRLIPELRNPRASHK SASRVLQETCNYI
Sbjct: 1  MSSRRSSRSRNSSASSPLISDDQIADLVSKLQRLIPELRNPRASHKVSASRVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLSERLSQLLAATENDSAEA IIRSLF+
Sbjct: 61 RNLHREVDDLSERLSQLLAATENDSAEAAIIRSLFL 96

[Close]
BLAST of CsGy6G020450 vs. TrEMBL
Match: tr|W9R9Q5|W9R9Q5_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021126 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.6e-26
Identity = 77/96 (80.21%), Postives = 81/96 (84.38%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRRSS SR S   S  ISDDQI DLVSKLQRLIPE+RN R S K SAS+VLQETCNYI
Sbjct: 1  MSSRRSS-SRQS-GVSMNISDDQITDLVSKLQRLIPEIRN-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLS+RLSQLLA TENDSA+A IIRSL M
Sbjct: 61 RNLHREVDDLSDRLSQLLATTENDSAQAAIIRSLLM 93

[Close]
BLAST of CsGy6G020450 vs. TrEMBL
Match: tr|A0A2P5FQ94|A0A2P5FQ94_9ROSA (Myc-type, basic helix-loop-helix (BHLH) domain containing protein OS=Trema orientalis OX=63057 GN=TorRG33x02_041050 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.7e-26
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRR SRSR S  +   I+DDQI DLVSKLQRLIPE+RN R S K SAS+VLQETCNYI
Sbjct: 1  MSSRR-SRSRQSGVSMNNITDDQITDLVSKLQRLIPEIRN-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLS+RLS+LLA T+NDSA+A IIRSL M
Sbjct: 61 RNLHREVDDLSDRLSELLATTDNDSAQAAIIRSLLM 94

[Close]
BLAST of CsGy6G020450 vs. TrEMBL
Match: tr|A0A2P5AUN0|A0A2P5AUN0_PARAD (Myc-type, basic helix-loop-helix (BHLH) domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298930 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.7e-26
Identity = 73/96 (76.04%), Postives = 81/96 (84.38%), Query Frame = 0 

Query: 1  MSSRRSSRSRNSTAASPLISDDQIADLVSKLQRLIPELRNPRASHKASASRVLQETCNYI 60
          MSSRR SRSR S  +   I+DDQI DLVSKLQRLIPE+RN R S K SAS+VLQETCNYI
Sbjct: 1  MSSRR-SRSRQSGVSMNNITDDQITDLVSKLQRLIPEIRN-RRSDKVSASKVLQETCNYI 60

Query: 61 RNLHREVDDLSERLSQLLAATENDSAEATIIRSLFM 97
          RNLHREVDDLS+RLS+LLA T+NDSA+A IIRSL M
Sbjct: 61 RNLHREVDDLSDRLSELLATTDNDSAQAAIIRSLLM 94

The following BLAST results are available for this feature:
BLAST of CsGy6G020450 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146747.13.5e-41100.00PREDICTED: transcription factor PRE6-like [Cucumis sativus] >KGN47805.1 hypothet... [more]
XP_008465587.15.7e-3994.79PREDICTED: transcription factor PRE6-like [Cucumis melo][more]
XP_022946595.13.0e-3287.50transcription factor PRE6-like [Cucurbita moschata] >XP_022999784.1 transcriptio... [more]
XP_023546056.16.7e-3286.46transcription factor PRE6-like [Cucurbita pepo subsp. pepo][more]
XP_022151333.16.3e-3082.29transcription factor PRE6-like [Momordica charantia][more]
BLAST of CsGy6G020450 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G26945.16.5e-2977.66basic helix-loop-helix (bHLH) DNA-binding superfamily protein[more]
AT5G39860.12.8e-2462.50basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT1G74500.16.3e-2468.09activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1[more]
AT3G28857.11.8e-2360.42basic helix-loop-helix (bHLH) DNA-binding family protein[more]
AT3G47710.19.0e-2365.96BANQUO 3[more]
BLAST of CsGy6G020450 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q8GW32|PRE6_ARATH1.2e-2777.66Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1[more]
sp|Q9FLE9|PRE1_ARATH5.1e-2362.50Transcription factor PRE1 OS=Arabidopsis thaliana OX=3702 GN=PRE1 PE=1 SV=1[more]
sp|Q9CA64|PRE3_ARATH1.1e-2268.09Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1[more]
sp|Q9LJX1|PRE5_ARATH3.3e-2260.42Transcription factor PRE5 OS=Arabidopsis thaliana OX=3702 GN=PRE5 PE=1 SV=1[more]
sp|F4JCN9|PRE4_ARATH1.6e-2165.96Transcription factor PRE4 OS=Arabidopsis thaliana OX=3702 GN=PRE4 PE=1 SV=1[more]
BLAST of CsGy6G020450 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDL6|A0A0A0KDL6_CUCSA2.3e-41100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G404200 PE=4 SV=1[more]
tr|A0A1S3CPL2|A0A1S3CPL2_CUCME3.7e-3994.79transcription factor PRE6-like OS=Cucumis melo OX=3656 GN=LOC103503223 PE=4 SV=1[more]
tr|W9R9Q5|W9R9Q5_9ROSA3.6e-2680.21Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_021126 PE=4 SV=1[more]
tr|A0A2P5FQ94|A0A2P5FQ94_9ROSA4.7e-2676.04Myc-type, basic helix-loop-helix (BHLH) domain containing protein OS=Trema orien... [more]
tr|A0A2P5AUN0|A0A2P5AUN0_PARAD4.7e-2676.04Myc-type, basic helix-loop-helix (BHLH) domain containing protein OS=Parasponia ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0046983protein dimerization activity
Vocabulary: INTERPRO
TermDefinition
IPR011598bHLH_dom
IPR036638HLH_DNA-bd_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0046983 protein dimerization activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsGy6G020450.1CsGy6G020450.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 60..80
NoneNo IPR availablePANTHERPTHR12565STEROL REGULATORY ELEMENT-BINDING PROTEINcoord: 1..96
NoneNo IPR availablePANTHERPTHR12565:SF299SUBFAMILY NOT NAMEDcoord: 1..96
IPR036638Helix-loop-helix DNA-binding domain superfamilyGENE3DG3DSA:4.10.280.10coord: 21..92
e-value: 7.3E-9
score: 37.7
IPR036638Helix-loop-helix DNA-binding domain superfamilySUPERFAMILYSSF47459HLH, helix-loop-helix DNA-binding domaincoord: 22..80
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPFAMPF00010HLHcoord: 22..63
e-value: 2.4E-4
score: 20.9
IPR011598Myc-type, basic helix-loop-helix (bHLH) domainPROSITEPS50888BHLHcoord: 8..63
score: 9.432