Lsi08G006820 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G006820
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRAC-like GTP binding protein 5
Locationchr08 : 15149459 .. 15152802 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGGGTTCTTCTTCAAAAGGAAGATGCAGTAGTTACGATTACTCTTTCAAGATTTTGTTGATTGGGGATTCTGGTGTTGGAAAAAGCAGTATTCTCCTTAGCTACATCTCCAATTTTGTTCATGATCTTTCTCCCACCATCGGTTTTTCTCTCTCTTTTCTCTCTATCTATGCATGTTTTGATGGTTAATTCTTATAAACTCGTTTTTTATTGAAAACCCAGATGCTCCATTCTGTTCTTATTTTAATCCTCAAAGAAGTCTTTACAGTTCTGTTGGTTGGTTGAACATATGTTGATCAGATATTCTTGTTCTTTCCCATGTTTTTCTTGTTCTTTGTGGTTAATTTGCTGATCATAATTTTTTTTATTGATTTCTGGTGTTTCGAGTGCTTATTGAATTGGGAGTTATATGCTAGAATGGTTTCTGGAACTTCAAGGGCTGAAGTGTTGTTGTAGTGTGAGACAGTAGCTTTGAACCAACTTTGTGGTTTAGTAAATTTGTTCCCATCTATATGATTAGTTTAACAAGTATTGAGATGACTAAATTTAACATAACCTATCTGGGCTTTTAGGTTCATTGGTGAATTAACATGATACCAGAGCAGGAGGTCTTGTGTTCGAAGTAATGTCTTTTTTACCCCGATTAATATTGATTTTTACTTGCTGGGCATTCTACGAATTCTCAAGCCCACACTTGAGAAAAGTGTTAAAATATTGATATAATTAAATTTACCGGTGATTTACAATTTAGGACTTTGGAGGGCCCTTATGTCCTTGGAAAGAGTCAATTATACTTGGTGATGCAAGTGCCCTTAAGATTCTCATTGTTGAGGAGTTTGTAGAGACAATTAAAAGGTTGCCTGAGAGTATTTCTTTTTTTTTTTTTTTTTTTTGAAATGTTACATATAACTCAAGAGGAAATTCGAACCTGTAACCTATAACTTGATGTTAGTATCACTTGAGTGACACTAAACTTGGTGAGAGCATAGTTTTTTTTTTCTTTCCCTCAAACAATTAATTTCTGAGAGAGAAGCTAGTGATTTTCATGATTTATGTATTGGACAGTAAAATGGGTATTACATATGTTTGTAATGCTGTTCATCACTTCCCGTTTTAATCACTATTGTACAAAGTTCCATATCCCATTTACATTTTAAAAATTGTTGCAACAAAAGGCAAGGATATTATGTAAGATGGATTGGATGATTGATGCTATTTTAACCTTATAATTCCTCCCTTCCCGTGTTTAAGTTTGCTGGGAGAAGCAGCCTCCATTAACTTCTCGTTTCTCTTGAGTAATCTCCATTTTGTGCATTGCTCCAGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGGAAAAGATTGAAGCTAACAATTTGGGACACAGGTAACTGGATGATTGACTAGTCCTTTCACAGGATATTTTATGAAGTGTTCTTTCTCGCGTTGATTGTGAGAAAATAACAAATGTTCAGGTGTAATAAAAAAGTAACCATTGTGGATTAAATATCCTTTGTTGAGGATTATTTATTTATTTATTGTCATTTCATTTATGGCACTTGCTAGTTTGATGATTTCGTGCACGTTTTTATTCTGTGTTCTTGTACGCAGCTGGACAAGAGAGATTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGGTATGATGAAAAGAAGCAAAAAATCTCTTTCGACAATTTTCCTGAAAAACAATCTTTGAAATTCTTTTATCTCCTGGAAACATCGATAAGCTTACCTTTCACGAGTTGCTGATTTTATTTTAATTTTCTTGATGGATTTTTAATTTTAATCAAGACTCTGTTAAATGATAACTGAAACAATGAGAACTGCGAATTTTTCTTGGTAACTGAAATTGAGTGCATATGGAGAATTTTTCTTGGTAACTGAAACGACGAGAACTGCGAATTGAGATATTAGAAACAGAGCTAATGAGACGAGACTTGTGAGCAAGGAAGTAATTAATCAGCATTCACTTCACCTTTATCTTTTATGTTCTCTTGTATAGACAGTCTATAAAAGTTGAAGTGTTCGTCCGTCTGTTCAATTCAAGCTGTATTGAAAACAAAAGCTCCATTCAAAACGTTTAGCTGTTCTTTTTTTTTTTTTTTTTTTTTTTTCCTGTCATGCCAACATCATCCGACAGCTTTTTCTTCTTCATTTATGTTGTGTTCTTGTTCCCGTGTTTTCTTTCTTGCGTTAAGTATATCCGATACCTTTGTATTTTGGAAACTAGTTCTCATGGCATGTTTTTTCACATTTGAATGTATCAAATTTAGTTTGAGCTTCATGAGGCCCGAGACTAATCTATATTTTGCCAATAGTATACGACGTTACCCGACGGGAGACGTTTACAAACTTGATGGATGTATGGGCAAAGGAAGTAGAGTTGTATTTAACCAATCATGAGTGCATAAAGATTCTAGTTGGAAATAAAGTCGATCGGGTAAGTTTGTACCACTATTCCCCGTCCATCCTTTGTCAACATTCTGTTGCCATGCTGTCTGATAATCTTCAAACCTTTAACCTTTCATTTCAACTTACATCACATTAGGAGAGAATTTTTAAATCATGTTCTCAAGTGTGGTGTCGTGTTCTCAAAATCTTATTATCGACAGGGTAGTGAAAGAGCGGTAACAACAGAAGAAGGCATGGAAGTTGCCAAGGAGCATAAAAGTTTGTTTCTTGAGTGCAGTGCTAGAACTCGAGAAAATGTCGACAGATGCTTCAGTGAACTCTCTTCAAAGGTAACTATCTTAACACTAAGAAGCTCGCATTTTACTCTAATCATCTTCCGAACTTCATTGCGTAAGTGCTATTGTGGGACTAGTGACTCCTAAGAATGGCCACTACACACAGTACACTTTTACACACAAGTATTAGTTTAGGAGCTAGAGTCAGGATTAGTTATAATCTTTCGGAACAAAAGCACGTAATCTTAATTTCCCTTAATCTCAAATAAAGCCAAAAAAAGTAACTCGTCTATGCATGGTTCCATACTTCGAAAGTATGATAGGTTGTTGGGGCATTTTCTCTTAACATAGAATCAAAAGTGGCTCTAGCAGTGGCTGAAAACTTTCATTTATTTTCCATGTGGGGTTGGACGTAAAGTTCGAAACCGATCCGAATGTATTTCATATCATGGCTTTTTGGGATGGTCTAAACTCTAAATTGGTTTAATTATAATCCAGATGCTGGAAGTTCCAAGTCTACTGGAAAATGGATCTGTTGTTGTGAAACAGAAAATTTTGGACAAGACACGAGCACGCAAAGAAGCGAACGACGGGGGTTGTTGCCACTAA

mRNA sequence

ATGATGGGTTCTTCTTCAAAAGGAAGATGCAGTAGTTACGATTACTCTTTCAAGATTTTGTTGATTGGGGATTCTGGTGTTGGAAAAAGCAGTATTCTCCTTAGCTACATCTCCAATTTTGTTCATGATCTTTCTCCCACCATCGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGGAAAAGATTGAAGCTAACAATTTGGGACACAGCTGGACAAGAGAGATTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGTATACGACGTTACCCGACGGGAGACGTTTACAAACTTGATGGATGTATGGGCAAAGGAAGTAGAGTTGTATTTAACCAATCATGAGTGCATAAAGATTCTAGTTGGAAATAAAGTCGATCGGGGTAGTGAAAGAGCGGTAACAACAGAAGAAGGCATGGAAGTTGCCAAGGAGCATAAAAGTTTGTTTCTTGAGTGCAGTGCTAGAACTCGAGAAAATGTCGACAGATGCTTCAGTGAACTCTCTTCAAAGATGCTGGAAGTTCCAAGTCTACTGGAAAATGGATCTGTTGTTGTGAAACAGAAAATTTTGGACAAGACACGAGCACGCAAAGAAGCGAACGACGGGGGTTGTTGCCACTAA

Coding sequence (CDS)

ATGATGGGTTCTTCTTCAAAAGGAAGATGCAGTAGTTACGATTACTCTTTCAAGATTTTGTTGATTGGGGATTCTGGTGTTGGAAAAAGCAGTATTCTCCTTAGCTACATCTCCAATTTTGTTCATGATCTTTCTCCCACCATCGGTGTGGATTTCAAGATCAAGATGGTAACAGTTGGTGGGAAAAGATTGAAGCTAACAATTTGGGACACAGCTGGACAAGAGAGATTTGGAACATTGACAAGCTCTTACTACAGAGGTGCACATGGAATCATCCTAGTATACGACGTTACCCGACGGGAGACGTTTACAAACTTGATGGATGTATGGGCAAAGGAAGTAGAGTTGTATTTAACCAATCATGAGTGCATAAAGATTCTAGTTGGAAATAAAGTCGATCGGGGTAGTGAAAGAGCGGTAACAACAGAAGAAGGCATGGAAGTTGCCAAGGAGCATAAAAGTTTGTTTCTTGAGTGCAGTGCTAGAACTCGAGAAAATGTCGACAGATGCTTCAGTGAACTCTCTTCAAAGATGCTGGAAGTTCCAAGTCTACTGGAAAATGGATCTGTTGTTGTGAAACAGAAAATTTTGGACAAGACACGAGCACGCAAAGAAGCGAACGACGGGGGTTGTTGCCACTAA

Protein sequence

MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPSLLENGSVVVKQKILDKTRARKEANDGGCCH
Homology
[Close]
BLAST of Lsi08G006820 vs. Swiss-Prot
Match: RAC2A_ARATH (Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1)

HSP 1 Score: 298.1 bits (762), Expect = 7.5e-80
Identity = 150/211 (71.09%), Postives = 174/211 (82.46%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+L+S+IS+ V DL+PTIGVDFKIK +TVGG
Sbjct: 1   MGSSSGQ--SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGG 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           KRLKLTIWDTAGQERF TLTSSYYRGA GIILVYDVTRRETFTNL+DVW KE+ELY TN 
Sbjct: 61  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           EC+++LVGNKVDR SER V+ EEG+ +AKE   +FLECSARTR+NV++CF EL+ K++EV
Sbjct: 121 ECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSLLE GS  VK+ IL +    +     GCC
Sbjct: 181 PSLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]
BLAST of Lsi08G006820 vs. Swiss-Prot
Match: RAC2B_ARATH (Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 9.5e-75
Identity = 147/211 (69.67%), Postives = 169/211 (80.09%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+LLS+IS+ V DL+PTIGVDFKIK + V G
Sbjct: 1   MGSSSGQ--SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRG 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           KRLKLTIWDTAGQE+F TLTSSY+RG+ GIILVYDVT+RETF NL D+WAKE+ELY TNH
Sbjct: 61  KRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNH 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           +CIK+LVGNKVDR SER V+ EEGM +AK+   LF ECSARTRENV+ CF EL+ K++EV
Sbjct: 121 DCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSLLE GS  VK+K          A+ G CC
Sbjct: 181 PSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]
BLAST of Lsi08G006820 vs. Swiss-Prot
Match: RABC1_ARATH (Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.1e-70
Identity = 134/211 (63.51%), Postives = 164/211 (77.73%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSS      +DY FK+LLIGDSGVGKSS+LLS+ SN   DLSPTIGVDFK+K +T+G 
Sbjct: 1   MGSSSGQ--PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGE 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           K+LKL IWDTAGQERF TLTSSYYRGA GII+VYDVTRR+TFTNL D+WAKE++LY TN 
Sbjct: 61  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           +CIK+LVGNKVD+ SERAV+ +EG++ A+E+  LFLECSA+TR NV++CF EL  K+LE 
Sbjct: 121 DCIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILET 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSL   GS   K+ I  +  A+  +     C
Sbjct: 181 PSLTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]
BLAST of Lsi08G006820 vs. Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.8e-50
Identity = 102/180 (56.67%), Postives = 128/180 (71.11%), Query Frame = 1 

Query: 12  SYDYSFKILLIGDSGVGKSSILLSYISN-FVHDLSPTIGVDFKIKMVTVGGKRLKLTIWD 71
           S+DY+FK+LL+GDSGVGKS IL  + S  F    + TIGVDFK+K +T  GKR KLTIWD
Sbjct: 5   SHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWD 64

Query: 72  TAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILVGN 131
           TAGQERF TLTSSYYRGA GII VYDVTRR+TF +L   W +E ++Y T    IK++V N
Sbjct: 65  TAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVAN 124

Query: 132 KVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPSLLENGSV 191
           KVD  ++R V++EEG + A+ H  LF+E SAR    V + F EL  K+L+ P LLE  +V
Sbjct: 125 KVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLETTAV 184

[Close]
BLAST of Lsi08G006820 vs. Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.2e-47
Identity = 99/197 (50.25%), Postives = 134/197 (68.02%), Query Frame = 1 

Query: 16  SFKILLIGDSGVGKSSILLSYISN-FVHDLSPTIGVDFKIKMVTVGGKRLKLTIWDTAGQ 75
           + KIL+IG+SGVGKSS+LL +  + F  +L+ TIGVDFK+K + + G R KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query: 76  ERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILVGNKVDR 135
           ERF TLT SYYRGA G+ILVYDVT+R+TFT L + W  E+E Y T ++ +K+LVGNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 127

Query: 136 GSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPSLLENGSVVVKQ 195
              R V   EG++ A++H  LF+E SA+TR+ V   F EL  K+L+ P L E+       
Sbjct: 128 -DNREVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWESSIQNHGV 187

Query: 196 KILDKTRARKEANDGGC 212
           ++ D    R+ A  G C
Sbjct: 188 QLSDNEPQRQGACGGYC 202

[Close]
BLAST of Lsi08G006820 vs. TrEMBL
Match: A0A0A0LN27_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G326500 PE=4 SV=1)

HSP 1 Score: 401.0 bits (1029), Expect = 9.2e-109
Identity = 201/215 (93.49%), Postives = 208/215 (96.74%), Query Frame = 1 

Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 120
           GK+LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL++VWAKEVELYLTN
Sbjct: 61  GKKLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINVWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 180
            ECIKILVGNKVDRGS+RAVTTEEGMEVAK+HKSLFLECSARTRENVDRCF ELSSKM+E
Sbjct: 121 RECIKILVGNKVDRGSDRAVTTEEGMEVAKKHKSLFLECSARTRENVDRCFKELSSKMME 180

Query: 181 VPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 214
           VPSLLENGSVVVKQKILDKT+ARK  E ND GCCH
Sbjct: 181 VPSLLENGSVVVKQKILDKTQARKEVEVNDRGCCH 215

[Close]
BLAST of Lsi08G006820 vs. TrEMBL
Match: A0A061FVM1_THECC (Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 1 OS=Theobroma cacao GN=TCM_043355 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 4.7e-89
Identity = 168/214 (78.50%), Postives = 186/214 (86.92%), Query Frame = 1 

Query: 1   MMGSSSK--GRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVT 60
           M+GSSS   G  +SYDYSFKILLIGDSGVGKSS+L+S+ISNFVHDLSPTIGVDFKIKMVT
Sbjct: 1   MLGSSSSKGGGNNSYDYSFKILLIGDSGVGKSSLLVSFISNFVHDLSPTIGVDFKIKMVT 60

Query: 61  VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYL 120
           VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL ++WAKEVELY 
Sbjct: 61  VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSEIWAKEVELYS 120

Query: 121 TNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKM 180
           TNHECIKILVGNKVDR SERAVT EEGM +A+EHK  FLECSA+TRENV +CF +L  K+
Sbjct: 121 TNHECIKILVGNKVDRDSERAVTREEGMALAQEHKCSFLECSAKTRENVHQCFKDLILKV 180

Query: 181 LEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           LEVP+L E GS VVK++IL + +  K     GCC
Sbjct: 181 LEVPALREKGSAVVKKQILQQKQEHKVPQSNGCC 214

[Close]
BLAST of Lsi08G006820 vs. TrEMBL
Match: A0A067K2Q1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16180 PE=4 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.4e-87
Identity = 166/211 (78.67%), Postives = 181/211 (85.78%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSSK   +SYDYSFKILLIGDSGVGKSSILLS+ISN VHDLSPTIGVDFKIKM+ VGG
Sbjct: 1   MGSSSKVGNNSYDYSFKILLIGDSGVGKSSILLSFISNSVHDLSPTIGVDFKIKMLNVGG 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           KRLKLTIWDTAGQERFGTL  SYYRGAHGIILVYDVTRRETFTNL D+WAKEVELY TN 
Sbjct: 61  KRLKLTIWDTAGQERFGTLIRSYYRGAHGIILVYDVTRRETFTNLSDMWAKEVELYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           +CIKILVGNKVDR SER V+ EEGM +A EHK  FLECSA+TRENV +CF EL+ K+LEV
Sbjct: 121 DCIKILVGNKVDRDSERVVSREEGMALAAEHKCSFLECSAKTRENVQQCFKELTLKILEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSLL+NGSVVVKQ+IL +    +     GCC
Sbjct: 181 PSLLQNGSVVVKQQILKQKPGYQAPRGSGCC 211

[Close]
BLAST of Lsi08G006820 vs. TrEMBL
Match: A9P9Z6_POPTR (GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0010s23620g PE=2 SV=1)

HSP 1 Score: 322.4 bits (825), Expect = 4.2e-85
Identity = 163/212 (76.89%), Postives = 184/212 (86.79%), Query Frame = 1 

Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60
           M GS SKG  +SYDYSFKILLIGDSGVGKSS+LLS+ISN V DLSPTIGVDFKIK++T+G
Sbjct: 1   MAGSFSKGWNNSYDYSFKILLIGDSGVGKSSLLLSFISNSVRDLSPTIGVDFKIKVLTLG 60

Query: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 120
           GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETF NL D+WA+EVELY TN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFENLSDIWAEEVELY-TN 120

Query: 121 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 180
            +CIKILVGNKVDR SER V+ EEGM +A+EHK  FLECSA+TRENV +CF EL+ K+ E
Sbjct: 121 QKCIKILVGNKVDRDSERVVSREEGMALAQEHKCSFLECSAKTRENVLQCFKELTLKISE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           VPSLLENGSVVV+Q+IL + +  +    GGCC
Sbjct: 181 VPSLLENGSVVVRQQILKEKQVYQAPRGGGCC 211

[Close]
BLAST of Lsi08G006820 vs. TrEMBL
Match: B9HL69_POPTR (GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0008s03190g PE=4 SV=1)

HSP 1 Score: 319.7 bits (818), Expect = 2.7e-84
Identity = 161/212 (75.94%), Postives = 181/212 (85.38%), Query Frame = 1 

Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60
           M GS SKG  +SYDYSFKILLIGDSGVGKSS+LLS+IS+ V DLSPTIGVDFK+KM+TVG
Sbjct: 1   MAGSFSKGGNNSYDYSFKILLIGDSGVGKSSLLLSFISSSVRDLSPTIGVDFKVKMLTVG 60

Query: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 120
           GKRLKLTIWDTAGQERFGTL SSYYRGAHGIILVYDVTRRETF NL D+WAKEVELY TN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLISSYYRGAHGIILVYDVTRRETFENLSDIWAKEVELYSTN 120

Query: 121 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 180
           H+ IKILVGNKVDR SERAV+ EEGM +A++HK  F ECSA+T ENV +CF EL+ K+LE
Sbjct: 121 HDGIKILVGNKVDRDSERAVSREEGMALAQQHKCSFFECSAKTSENVLQCFKELTLKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           VPSLLENGSVVVKQ+I+   +  +    GG C
Sbjct: 181 VPSLLENGSVVVKQQIMKDKQVYQAPRGGGSC 212

[Close]
BLAST of Lsi08G006820 vs. TAIR10
Match: AT5G03530.1 (AT5G03530.1 RAB GTPase homolog C2A)

HSP 1 Score: 298.1 bits (762), Expect = 4.2e-81
Identity = 150/211 (71.09%), Postives = 174/211 (82.46%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+L+S+IS+ V DL+PTIGVDFKIK +TVGG
Sbjct: 1   MGSSSGQ--SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGG 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           KRLKLTIWDTAGQERF TLTSSYYRGA GIILVYDVTRRETFTNL+DVW KE+ELY TN 
Sbjct: 61  KRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           EC+++LVGNKVDR SER V+ EEG+ +AKE   +FLECSARTR+NV++CF EL+ K++EV
Sbjct: 121 ECVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSLLE GS  VK+ IL +    +     GCC
Sbjct: 181 PSLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]
BLAST of Lsi08G006820 vs. TAIR10
Match: AT3G09910.1 (AT3G09910.1 RAB GTPase homolog C2B)

HSP 1 Score: 281.2 bits (718), Expect = 5.4e-76
Identity = 147/211 (69.67%), Postives = 169/211 (80.09%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSS    S YD SFKILLIGDSGVGKSS+LLS+IS+ V DL+PTIGVDFKIK + V G
Sbjct: 1   MGSSSGQ--SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRG 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           KRLKLTIWDTAGQE+F TLTSSY+RG+ GIILVYDVT+RETF NL D+WAKE+ELY TNH
Sbjct: 61  KRLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNH 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           +CIK+LVGNKVDR SER V+ EEGM +AK+   LF ECSARTRENV+ CF EL+ K++EV
Sbjct: 121 DCIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEV 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSLLE GS  VK+K          A+ G CC
Sbjct: 181 PSLLEEGSSSVKRK------PDYRAHQGRCC 203

[Close]
BLAST of Lsi08G006820 vs. TAIR10
Match: AT1G43890.1 (AT1G43890.1 RAB GTPASE HOMOLOG B18)

HSP 1 Score: 267.7 bits (683), Expect = 6.1e-72
Identity = 134/211 (63.51%), Postives = 164/211 (77.73%), Query Frame = 1 

Query: 2   MGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGG 61
           MGSSS      +DY FK+LLIGDSGVGKSS+LLS+ SN   DLSPTIGVDFK+K +T+G 
Sbjct: 1   MGSSSGQ--PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGE 60

Query: 62  KRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNH 121
           K+LKL IWDTAGQERF TLTSSYYRGA GII+VYDVTRR+TFTNL D+WAKE++LY TN 
Sbjct: 61  KKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQ 120

Query: 122 ECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEV 181
           +CIK+LVGNKVD+ SERAV+ +EG++ A+E+  LFLECSA+TR NV++CF EL  K+LE 
Sbjct: 121 DCIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILET 180

Query: 182 PSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           PSL   GS   K+ I  +  A+  +     C
Sbjct: 181 PSLTAEGSSGGKKNIFKQNPAQTTSTSSSYC 209

[Close]
BLAST of Lsi08G006820 vs. TAIR10
Match: AT4G35860.1 (AT4G35860.1 GTP-binding 2)

HSP 1 Score: 170.6 bits (431), Expect = 1.0e-42
Identity = 91/172 (52.91%), Postives = 120/172 (69.77%), Query Frame = 1 

Query: 12  SYDYSFKILLIGDSGVGKSSILLSYISNF---VHDLSPTIGVDFKIKMVTVGGKRLKLTI 71
           SYDY FK ++IGD+GVGKS +LL +       VHDL  TIGV+F  +MVTV G+ +KL I
Sbjct: 2   SYDYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL--TIGVEFGARMVTVDGRPIKLQI 61

Query: 72  WDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILV 131
           WDTAGQE F ++T SYYRGA G +LVYD+TRRETF +L   W ++   +   +  I +L+
Sbjct: 62  WDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS-WLEDARQHANPNMSI-MLI 121

Query: 132 GNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 181
           GNK D   +RAV+ EEG + AKEH  LFLE SART +NV+  F E ++K+L+
Sbjct: 122 GNKCDLAHKRAVSKEEGQQFAKEHGLLFLEASARTAQNVEEAFIETAAKILQ 169

[Close]
BLAST of Lsi08G006820 vs. TAIR10
Match: AT3G11730.1 (AT3G11730.1 Ras-related small GTP-binding family protein)

HSP 1 Score: 165.6 bits (418), Expect = 3.3e-41
Identity = 89/203 (43.84%), Postives = 122/203 (60.10%), Query Frame = 1 

Query: 11  SSYDYSFKILLIGDSGVGKSSILLSYISN-FVHDLSPTIGVDFKIKMVTVGGKRLKLTIW 70
           + YDY FK+LLIGDS VGKS +LL +  + ++     TIGVDFKI+ +   GK +KL IW
Sbjct: 3   NEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIW 62

Query: 71  DTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHECIKILVG 130
           DTAGQERF T+TSSYYRGAHGII+VYD T  E+F N+   W  E++ Y     C K+L+G
Sbjct: 63  DTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQ-WLSEIDRYANESVC-KLLIG 122

Query: 131 NKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPSLLENGS 190
           NK D    + V+TE G  +A E    FLE SA+   NV++ F  ++ ++ +      N +
Sbjct: 123 NKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNAN 182

Query: 191 VVVKQKILDKTRARKEANDGGCC 213
                  +       + N+GGCC
Sbjct: 183 KTSGPGTVQMKGQPIQQNNGGCC 203

[Close]
BLAST of Lsi08G006820 vs. NCBI nr
Match: gi|659113382|ref|XP_008456546.1| (PREDICTED: ras-related protein RABC2a-like [Cucumis melo])

HSP 1 Score: 402.1 bits (1032), Expect = 5.9e-109
Identity = 201/215 (93.49%), Postives = 207/215 (96.28%), Query Frame = 1 

Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 120
           GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL+++WAKEVELYLTN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINIWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 180
            ECIKILVGNKVDRGSERAVTTEEGME+AKEHKSLFLECSARTRENVDRCF ELSSK+LE
Sbjct: 121 RECIKILVGNKVDRGSERAVTTEEGMEIAKEHKSLFLECSARTRENVDRCFRELSSKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 214
           VPSLLENGS+VVKQKILDKTRA K  E ND GCCH
Sbjct: 181 VPSLLENGSIVVKQKILDKTRAHKEVEVNDRGCCH 215

[Close]
BLAST of Lsi08G006820 vs. NCBI nr
Match: gi|449465314|ref|XP_004150373.1| (PREDICTED: ras-related protein RABC2a-like [Cucumis sativus])

HSP 1 Score: 401.0 bits (1029), Expect = 1.3e-108
Identity = 201/215 (93.49%), Postives = 208/215 (96.74%), Query Frame = 1 

Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60
           MMGSSSKGRC SYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG
Sbjct: 1   MMGSSSKGRCISYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60

Query: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 120
           GK+LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL++VWAKEVELYLTN
Sbjct: 61  GKKLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLINVWAKEVELYLTN 120

Query: 121 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 180
            ECIKILVGNKVDRGS+RAVTTEEGMEVAK+HKSLFLECSARTRENVDRCF ELSSKM+E
Sbjct: 121 RECIKILVGNKVDRGSDRAVTTEEGMEVAKKHKSLFLECSARTRENVDRCFKELSSKMME 180

Query: 181 VPSLLENGSVVVKQKILDKTRARK--EANDGGCCH 214
           VPSLLENGSVVVKQKILDKT+ARK  E ND GCCH
Sbjct: 181 VPSLLENGSVVVKQKILDKTQARKEVEVNDRGCCH 215

[Close]
BLAST of Lsi08G006820 vs. NCBI nr
Match: gi|590565776|ref|XP_007010044.1| (Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 1 [Theobroma cacao])

HSP 1 Score: 335.5 bits (859), Expect = 6.8e-89
Identity = 168/214 (78.50%), Postives = 186/214 (86.92%), Query Frame = 1 

Query: 1   MMGSSSK--GRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVT 60
           M+GSSS   G  +SYDYSFKILLIGDSGVGKSS+L+S+ISNFVHDLSPTIGVDFKIKMVT
Sbjct: 1   MLGSSSSKGGGNNSYDYSFKILLIGDSGVGKSSLLVSFISNFVHDLSPTIGVDFKIKMVT 60

Query: 61  VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYL 120
           VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNL ++WAKEVELY 
Sbjct: 61  VGGKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLSEIWAKEVELYS 120

Query: 121 TNHECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKM 180
           TNHECIKILVGNKVDR SERAVT EEGM +A+EHK  FLECSA+TRENV +CF +L  K+
Sbjct: 121 TNHECIKILVGNKVDRDSERAVTREEGMALAQEHKCSFLECSAKTRENVHQCFKDLILKV 180

Query: 181 LEVPSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           LEVP+L E GS VVK++IL + +  K     GCC
Sbjct: 181 LEVPALREKGSAVVKKQILQQKQEHKVPQSNGCC 214

[Close]
BLAST of Lsi08G006820 vs. NCBI nr
Match: gi|802661426|ref|XP_012080999.1| (PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas])

HSP 1 Score: 331.3 bits (848), Expect = 1.3e-87
Identity = 167/212 (78.77%), Postives = 182/212 (85.85%), Query Frame = 1 

Query: 1   MMGSSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVG 60
           MMGSSSK   +SYDYSFKILLIGDSGVGKSSILLS+ISN VHDLSPTIGVDFKIKM+ VG
Sbjct: 1   MMGSSSKVGNNSYDYSFKILLIGDSGVGKSSILLSFISNSVHDLSPTIGVDFKIKMLNVG 60

Query: 61  GKRLKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTN 120
           GKRLKLTIWDTAGQERFGTL  SYYRGAHGIILVYDVTRRETFTNL D+WAKEVELY TN
Sbjct: 61  GKRLKLTIWDTAGQERFGTLIRSYYRGAHGIILVYDVTRRETFTNLSDMWAKEVELYSTN 120

Query: 121 HECIKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLE 180
            +CIKILVGNKVDR SER V+ EEGM +A EHK  FLECSA+TRENV +CF EL+ K+LE
Sbjct: 121 QDCIKILVGNKVDRDSERVVSREEGMALAAEHKCSFLECSAKTRENVQQCFKELTLKILE 180

Query: 181 VPSLLENGSVVVKQKILDKTRARKEANDGGCC 213
           VPSLL+NGSVVVKQ+IL +    +     GCC
Sbjct: 181 VPSLLQNGSVVVKQQILKQKPGYQAPRGSGCC 212

[Close]
BLAST of Lsi08G006820 vs. NCBI nr
Match: gi|1000940115|ref|XP_015583101.1| (PREDICTED: ras-related protein RABC2a [Ricinus communis])

HSP 1 Score: 330.1 bits (845), Expect = 2.9e-87
Identity = 166/209 (79.43%), Postives = 181/209 (86.60%), Query Frame = 1 

Query: 4   SSSKGRCSSYDYSFKILLIGDSGVGKSSILLSYISNFVHDLSPTIGVDFKIKMVTVGGKR 63
           SSSK   +SYDYSFKILLIGDSGVGKSSILLS+ISN VHDLSPTIGVDFKIKM++ GGKR
Sbjct: 6   SSSKVGNNSYDYSFKILLIGDSGVGKSSILLSFISNSVHDLSPTIGVDFKIKMLSAGGKR 65

Query: 64  LKLTIWDTAGQERFGTLTSSYYRGAHGIILVYDVTRRETFTNLMDVWAKEVELYLTNHEC 123
           LKLTIWDTAGQERFGTL SSYYRGAHGIILVYDVTRRETFTNL D WAKEVELY TN EC
Sbjct: 66  LKLTIWDTAGQERFGTLISSYYRGAHGIILVYDVTRRETFTNLSDTWAKEVELYSTNKEC 125

Query: 124 IKILVGNKVDRGSERAVTTEEGMEVAKEHKSLFLECSARTRENVDRCFSELSSKMLEVPS 183
           IK+LVGNKVDR SERAV+ EEGM +A+EHK  FLECSA+TRENV +CF ELS K+LEVPS
Sbjct: 126 IKVLVGNKVDRDSERAVSKEEGMALAEEHKCSFLECSAKTRENVLQCFKELSLKILEVPS 185

Query: 184 LLENGSVVVKQKILDKTRARKEANDGGCC 213
           LLENGS  VKQ +L + +  K  + GGCC
Sbjct: 186 LLENGSAAVKQHVLKQKQEYKALHGGGCC 214

The following BLAST results are available for this feature:
BLAST of Lsi08G006820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RAC2A_ARATH7.5e-8071.09Ras-related protein RABC2a OS=Arabidopsis thaliana GN=RABC2A PE=1 SV=1[more]
RAC2B_ARATH9.5e-7569.67Ras-related protein RABC2b OS=Arabidopsis thaliana GN=RABC2B PE=2 SV=1[more]
RABC1_ARATH1.1e-7063.51Ras-related protein RABC1 OS=Arabidopsis thaliana GN=RABC1 PE=1 SV=1[more]
YPTV3_VOLCA4.8e-5056.67GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1[more]
RB18B_DANRE2.2e-4750.25Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1[more]
BLAST of Lsi08G006820 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LN27_CUCSA9.2e-10993.49Uncharacterized protein OS=Cucumis sativus GN=Csa_2G326500 PE=4 SV=1[more]
A0A061FVM1_THECC4.7e-8978.50Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 1 OS=Theobroma caca... [more]
A0A067K2Q1_JATCU3.4e-8778.67Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16180 PE=4 SV=1[more]
A9P9Z6_POPTR4.2e-8576.89GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0010s23620g PE=2 SV=1[more]
B9HL69_POPTR2.7e-8475.94GTP-binding family protein OS=Populus trichocarpa GN=POPTR_0008s03190g PE=4 SV=1[more]
BLAST of Lsi08G006820 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G03530.14.2e-8171.09 RAB GTPase homolog C2A[more]
AT3G09910.15.4e-7669.67 RAB GTPase homolog C2B[more]
AT1G43890.16.1e-7263.51 RAB GTPASE HOMOLOG B18[more]
AT4G35860.11.0e-4252.91 GTP-binding 2[more]
AT3G11730.13.3e-4143.84 Ras-related small GTP-binding family protein[more]
BLAST of Lsi08G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659113382|ref|XP_008456546.1|5.9e-10993.49PREDICTED: ras-related protein RABC2a-like [Cucumis melo][more]
gi|449465314|ref|XP_004150373.1|1.3e-10893.49PREDICTED: ras-related protein RABC2a-like [Cucumis sativus][more]
gi|590565776|ref|XP_007010044.1|6.8e-8978.50Rab gtpase c2a, alpha,atrab,atrab18b,atrabc2a,rabc2a isoform 1 [Theobroma cacao][more]
gi|802661426|ref|XP_012080999.1|1.3e-8778.77PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas][more]
gi|1000940115|ref|XP_015583101.1|2.9e-8779.43PREDICTED: ras-related protein RABC2a [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0007264small GTPase mediated signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0008152 metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005622 intracellular
cellular_component GO:0016020 membrane
cellular_component GO:0005777 peroxisome
cellular_component GO:0005575 cellular_component
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0030742 GTP-dependent protein binding
molecular_function GO:0080115 myosin XI tail binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G006820.1Lsi08G006820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 18..179
score: 1.5
IPR005225Small GTP-binding protein domainTIGRFAMsTIGR00231TIGR00231coord: 15..173
score: 9.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3DG3DSA:3.40.50.300coord: 11..212
score: 8.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseunknownSSF52540P-loop containing nucleoside triphosphate hydrolasescoord: 12..189
score: 2.12
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 39..55
score: 2.5E-36coord: 57..79
score: 2.5E-36coord: 17..38
score: 2.5E-36coord: 156..178
score: 2.5E-36coord: 121..134
score: 2.5
NoneNo IPR availablePANTHERPTHR24073FAMILY NOT NAMEDcoord: 9..212
score: 2.5E
NoneNo IPR availablePANTHERPTHR24073:SF536RAS-RELATED PROTEIN RABC2Acoord: 9..212
score: 2.5E
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 14..181
score: 4.4
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 19..181
score: 1.3
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 17..181
score: 3.3
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 22..211
score: 3.
NoneNo IPR availablePROFILEPS51419RABcoord: 12..212
score: 31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G006820Csa2G326500Cucumber (Chinese Long) v2culsiB146
Lsi08G006820CSPI02G16100Wild cucumber (PI 183967)cpilsiB145
Lsi08G006820Cucsa.186160Cucumber (Gy14) v1cgylsiB314
Lsi08G006820CmaCh04G025460Cucurbita maxima (Rimu)cmalsiB703
Lsi08G006820CmoCh04G026640Cucurbita moschata (Rifu)cmolsiB697
Lsi08G006820Cla017780Watermelon (97103) v1lsiwmB464
Lsi08G006820Cla013732Watermelon (97103) v1lsiwmB475
Lsi08G006820MELO3C019844Melon (DHL92) v3.5.1lsimeB470
Lsi08G006820MELO3C009380Melon (DHL92) v3.5.1lsimeB483
Lsi08G006820ClCG08G007890Watermelon (Charleston Gray)lsiwcgB443
Lsi08G006820MELO3C019844.2Melon (DHL92) v3.6.1lsimedB490
Lsi08G006820Cla97C08G150640Watermelon (97103) v2lsiwmbB448
Lsi08G006820Cla97C10G203030Watermelon (97103) v2lsiwmbB426
Lsi08G006820Bhi04G001048Wax gourdlsiwgoB594
Lsi08G006820Cp4.1LG01g24670Cucurbita pepo (Zucchini)cpelsiB382
Lsi08G006820CsGy2G016230Cucumber (Gy14) v2cgyblsiB127
Lsi08G006820Carg04590Silver-seed gourdcarlsiB628
Lsi08G006820CsaV3_2G021030Cucumber (Chinese Long) v3cuclsiB153
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Lsi08G006820Lsi03G019860Bottle gourd (USVL1VR-Ls)lsilsiB134
The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G006820Bottle gourd (USVL1VR-Ls)lsilsiB152
Lsi08G006820Cucumber (Gy14) v1cgylsiB498
Lsi08G006820Cucurbita maxima (Rimu)cmalsiB293
Lsi08G006820Cucurbita maxima (Rimu)cmalsiB395
Lsi08G006820Cucurbita maxima (Rimu)cmalsiB706
Lsi08G006820Cucurbita moschata (Rifu)cmolsiB281
Lsi08G006820Cucurbita moschata (Rifu)cmolsiB381
Lsi08G006820Cucurbita moschata (Rifu)cmolsiB700
Lsi08G006820Cucurbita pepo (Zucchini)cpelsiB161
Lsi08G006820Cucurbita pepo (Zucchini)cpelsiB384
Lsi08G006820Wild cucumber (PI 183967)cpilsiB393
Lsi08G006820Cucumber (Chinese Long) v2culsiB389
Lsi08G006820Melon (DHL92) v3.5.1lsimeB463
Lsi08G006820Watermelon (Charleston Gray)lsiwcgB435
Lsi08G006820Watermelon (97103) v1lsiwmB485
Lsi08G006820Cucumber (Gy14) v2cgyblsiB354
Lsi08G006820Melon (DHL92) v3.6.1lsimedB482
Lsi08G006820Silver-seed gourdcarlsiB243
Lsi08G006820Silver-seed gourdcarlsiB438
Lsi08G006820Silver-seed gourdcarlsiB769
Lsi08G006820Cucumber (Chinese Long) v3cuclsiB412
Lsi08G006820Watermelon (97103) v2lsiwmbB439
Lsi08G006820Wax gourdlsiwgoB618