Lsi08G006360 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G006360
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 14694532 .. 14694933 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCTTTACTCACATCTTTTATTTCTGGTATGGGTTCAAAACCTCAGGAAACCACTCAATATCTGGAGCATGCTGGTGATGCAAAGGATTGCGGTGGTGGTGACCTAGAGAGCTGTGCTCGTAGCCCCGAGGATTTCTCCTTGAGTGTCGATCAACTCAATCAAGACTTTAACAAATCTCTTGTTCTTAAAAGTTCATCCTCAATTGAATTAAAGGATAGTTCTAATCTGACGACTATGAAGCAATCAGAAGTTCCTGACAAGGTATATTCTTTTCCAACTAGTAAATATCCTAATCTGTGTTGGATTTTTTTCCCTAAATGATTTTGTTAGTCTTCTTTTAATCTTGTTATTTTTTCCCTTTACCAGGAAGATTATGATCTCTTTCCTTTCCCCAAATAA

mRNA sequence

AAACCTTTACTCACATCTTTTATTTCTGGTATGGGTTCAAAACCTCAGGAAACCACTCAATATCTGGAGCATGCTGGTGATGCAAAGGATTGCGGTGGTGGTGACCTAGAGAGCTGTGCTCGTAGCCCCGAGGATTTCTCCTTGAGTGTCGATCAACTCAATCAAGACTTTAACAAATCTCTTGTTCTTAAAAGTTCATCCTCAATTGAATTAAAGGATAGTTCTAATCTGACGACTATGAAGCAATCAGAAGTTCCTGACAAGGAAGATTATGATCTCTTTCCTTTCCCCAAATAA

Coding sequence (CDS)

AAACCTTTACTCACATCTTTTATTTCTGGTATGGGTTCAAAACCTCAGGAAACCACTCAATATCTGGAGCATGCTGGTGATGCAAAGGATTGCGGTGGTGGTGACCTAGAGAGCTGTGCTCGTAGCCCCGAGGATTTCTCCTTGAGTGTCGATCAACTCAATCAAGACTTTAACAAATCTCTTGTTCTTAAAAGTTCATCCTCAATTGAATTAAAGGATAGTTCTAATCTGACGACTATGAAGCAATCAGAAGTTCCTGACAAGGAAGATTATGATCTCTTTCCTTTCCCCAAATAA

Protein sequence

KPLLTSFISGMGSKPQETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIELKDSSNLTTMKQSEVPDKEDYDLFPFPK
Homology
[Close]
BLAST of Lsi08G006360 vs. TrEMBL
Match: A0A0A0KE76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046290 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 11 MGSKPQETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIE 70
          MGSKPQ+TTQYLEHA  AKDC G DLES   SPEDFSLSVDQLNQDFNKSLVLK SSSIE
Sbjct: 1  MGSKPQDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIE 60

Query: 71 LKDSSNLTTMKQSEVPDKE 90
          LKDSS+ T MK S+   KE
Sbjct: 61 LKDSSSQTMMK-SDTDKKE 78

[Close]
BLAST of Lsi08G006360 vs. NCBI nr
Match: gi|778710434|ref|XP_011656573.1| (PREDICTED: uncharacterized protein LOC105435753 isoform X1 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 7.3e-22
Identity = 62/79 (78.48%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 11 MGSKPQETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIE 70
          MGSKPQ+TTQYLEHA  AKDC G DLES   SPEDFSLSVDQLNQDFNKSLVLK SSSIE
Sbjct: 1  MGSKPQDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIE 60

Query: 71 LKDSSNLTTMKQSEVPDKE 90
          LKDSS+ T MK S+   KE
Sbjct: 61 LKDSSSQTMMK-SDTDKKE 78

[Close]
BLAST of Lsi08G006360 vs. NCBI nr
Match: gi|659113516|ref|XP_008456616.1| (PREDICTED: uncharacterized protein LOC103496521 isoform X3 [Cucumis melo])

HSP 1 Score: 109.0 bits (271), Expect = 4.8e-21
Identity = 61/77 (79.22%), Postives = 63/77 (81.82%), Query Frame = 1 

Query: 13 SKPQETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIELK 72
          +KP +TTQYLEHA  AKDC G DLES   SPEDFSLSVDQLNQDFNKSLVLK SSSIELK
Sbjct: 2  TKPLDTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELK 61

Query: 73 DSSNLTTMKQSEVPDKE 90
          DSSNLT MK SE   KE
Sbjct: 62 DSSNLTMMK-SETDKKE 77

[Close]
BLAST of Lsi08G006360 vs. NCBI nr
Match: gi|659113512|ref|XP_008456614.1| (PREDICTED: uncharacterized protein LOC103496521 isoform X2 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 9.0e-20
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 17 ETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIELKDSSN 76
          +TTQYLEHA  AKDC G DLES   SPEDFSLSVDQLNQDFNKSLVLK SSSIELKDSSN
Sbjct: 10 DTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSN 69

Query: 77 LTTMKQSEVPDKE 90
          LT MK SE   KE
Sbjct: 70 LTMMK-SETDKKE 81

[Close]
BLAST of Lsi08G006360 vs. NCBI nr
Match: gi|659113510|ref|XP_008456612.1| (PREDICTED: uncharacterized protein LOC103496521 isoform X1 [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 9.0e-20
Identity = 59/73 (80.82%), Postives = 60/73 (82.19%), Query Frame = 1 

Query: 17 ETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIELKDSSN 76
          +TTQYLEHA  AKDC G DLES   SPEDFSLSVDQLNQDFNKSLVLK SSSIELKDSSN
Sbjct: 14 DTTQYLEHADAAKDCCGDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDSSN 73

Query: 77 LTTMKQSEVPDKE 90
          LT MK SE   KE
Sbjct: 74 LTMMK-SETDKKE 85

[Close]
BLAST of Lsi08G006360 vs. NCBI nr
Match: gi|778710438|ref|XP_011656574.1| (PREDICTED: uncharacterized protein LOC105435753 isoform X2 [Cucumis sativus])

HSP 1 Score: 101.3 bits (251), Expect = 9.9e-19
Identity = 57/75 (76.00%), Postives = 60/75 (80.00%), Query Frame = 1 

Query: 15 PQETTQYLEHAGDAKDCGGGDLESCARSPEDFSLSVDQLNQDFNKSLVLKSSSSIELKDS 74
          P +TTQYLEHA  AKDC G DLES   SPEDFSLSVDQLNQDFNKSLVLK SSSIELKDS
Sbjct: 4  PLDTTQYLEHADAAKDCCGDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSSIELKDS 63

Query: 75 SNLTTMKQSEVPDKE 90
          S+ T MK S+   KE
Sbjct: 64 SSQTMMK-SDTDKKE 77

The following BLAST results are available for this feature:
BLAST of Lsi08G006360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G006360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KE76_CUCSA5.1e-2278.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046290 PE=4 SV=1[more]
BLAST of Lsi08G006360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G006360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778710434|ref|XP_011656573.1|7.3e-2278.48PREDICTED: uncharacterized protein LOC105435753 isoform X1 [Cucumis sativus][more]
gi|659113516|ref|XP_008456616.1|4.8e-2179.22PREDICTED: uncharacterized protein LOC103496521 isoform X3 [Cucumis melo][more]
gi|659113512|ref|XP_008456614.1|9.0e-2080.82PREDICTED: uncharacterized protein LOC103496521 isoform X2 [Cucumis melo][more]
gi|659113510|ref|XP_008456612.1|9.0e-2080.82PREDICTED: uncharacterized protein LOC103496521 isoform X1 [Cucumis melo][more]
gi|778710438|ref|XP_011656574.1|9.9e-1976.00PREDICTED: uncharacterized protein LOC105435753 isoform X2 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G006360.1Lsi08G006360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi08G006360Csa6G046290Cucumber (Chinese Long) v2culsiB478
Lsi08G006360CSPI06G04080Wild cucumber (PI 183967)cpilsiB487
Lsi08G006360Cucsa.364540Cucumber (Gy14) v1cgylsiB588
Lsi08G006360CmoCh15G005380Cucurbita moschata (Rifu)cmolsiB282
Lsi08G006360Cla013683Watermelon (97103) v1lsiwmB475
Lsi08G006360MELO3C019908Melon (DHL92) v3.5.1lsimeB470
Lsi08G006360ClCG08G008390Watermelon (Charleston Gray)lsiwcgB443
Lsi08G006360MELO3C019908.2Melon (DHL92) v3.6.1lsimedB491
Lsi08G006360Cla97C08G151140Watermelon (97103) v2lsiwmbB448
Lsi08G006360Bhi04G001311Wax gourdlsiwgoB593
Lsi08G006360Cp4.1LG13g10580Cucurbita pepo (Zucchini)cpelsiB158
Lsi08G006360CsGy6G004040Cucumber (Gy14) v2cgyblsiB444
Lsi08G006360Carg01668Silver-seed gourdcarlsiB758
Lsi08G006360CsaV3_6G004370Cucumber (Chinese Long) v3cuclsiB509
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi08G006360Watermelon (97103) v2lsiwmbB439
Lsi08G006360Wax gourdlsiwgoB618
Lsi08G006360Bottle gourd (USVL1VR-Ls)lsilsiB152
Lsi08G006360Cucurbita maxima (Rimu)cmalsiB294
Lsi08G006360Cucurbita maxima (Rimu)cmalsiB703
Lsi08G006360Cucurbita maxima (Rimu)cmalsiB706
Lsi08G006360Cucurbita moschata (Rifu)cmolsiB697
Lsi08G006360Cucurbita moschata (Rifu)cmolsiB700
Lsi08G006360Cucurbita pepo (Zucchini)cpelsiB382
Lsi08G006360Cucurbita pepo (Zucchini)cpelsiB384
Lsi08G006360Cucumber (Chinese Long) v2culsiB389
Lsi08G006360Melon (DHL92) v3.5.1lsimeB463
Lsi08G006360Watermelon (Charleston Gray)lsiwcgB435
Lsi08G006360Watermelon (97103) v1lsiwmB485
Lsi08G006360Cucumber (Gy14) v2cgyblsiB354
Lsi08G006360Silver-seed gourdcarlsiB059
Lsi08G006360Silver-seed gourdcarlsiB769