Carg01668 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg01668
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase
Location	Cucurbita_argyrosperma_scaffold_004 : 2292526 .. 2297423 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCTGAATCCCAATTTGGGGTTTTCGACGAAACGGGTGCTTTGCGGCAATCTCATCTCCATCCATTTTGCTCATCAAATGATCTTCAATCGCTACATCTTGAAGATATGTTCGAGAAAACGAGAATGGAAGTGGAGAAAGGGAAGAAAAGGAAGGTTCGGGTTGTCTTTAATTCCAGTTTCCGCAAAAGGATTGGCGATTTTTCTACCAATAATATGACTATAGAGGTTTGGATCATCGCCGTTTGTGGCTTCTCGATGGCGGTCAAGTTGGCTAGGAGGGGAGGGTGCTGGTTAATCGGCGATCGGTTGATTGAGTCTTGTAGGTGATTGGGAAGGTACTGTCCCTTTAAAGCATTGTTTCTTTTTATCATGAGTGCGGAAGTGTTTAGATTGTGGAGTTCTGTTTTGATGTTTCTGATCTTGCGGGTGAGAGATATGAACTTAAGAAATCATGGGGGAAGGATTATATTTAGAATTGAACTACTGGATCCATGGTTCATATTGGATTAAAGCTTTGATTACTGGCATTTAGTGAGATATCATTGCTGGTTTTATTGTTCATGAGAGCTGCTAGAATATTAGAGACTCGCCTTTTAGATTTTTAACTTTGGTTGCAGCTCCTGGGGATGGCTAAGAGGTGGATACCTCGGGTCTTTGATTGTGTAATCTTGGTTAGAAACTGATATGAATGTTTAAATTTCCTGCTGTGAGATCTAAAAGCTAGAAAGAAAGATATAATGCAACTTCTGCATGTGCATAAGAAAGTTAAAGATCAATAAATTTGTATTGATACCGGTGAAATAGGATCTTTCATCGGACTTTCGAGGGTAAATATTGACCTTTTGTTTCCAATTGACATCGTTCTTTGATGAAGACGTGTGAGGAAGATATTTTAATGTCTTGAGTATCATTACTGGTGTTAGTACAGAGAGTAAGCACAAGAAGTAAATAAAGGCTTGAAACAATTTACGTAGAAGGTGAATTAATAATGTTCAAGATTATTTAACCTTCATTCGAGTTGACTCTTGTCAACTCATATGTAATGGAGATATAAGGGATGGTGCTTATGATCCTTAGTCATAGACATTTCATAATTATTTAAGGGATTCTAGATAAACAAGTTATATACAGCTTCTACCATGTGACTTTCATCCTTTTCATATTCAGTGCTTCTTTCACTTACTTAATGATACCACTGCTTAAGAGTCGAGAAACTTCAAGTTATAGAATCCTCGAGTATTGAAGTTAGTTGCTGCTGGGTTCACCGTTTAGGTAAAATTTACTATTATGGGATTCAGTTTTAAAGCCTTGTTGGAAAACAAATGTAAAGTATAAACTTGATGTTGCATACTGTTTTCGTGTTAACATACTTGTGATTCATAGAGGACATCAGGACGCGTGGGCGATTGAGTATAGAATGACCCAGCTACCAGTTAGTTTCCAAATTTTGATGTTTCATATGGATTATATACATCACCCAGCTAGTACTTTGTTTCCTTGAATAAGAAAATATAGAACTTTCCCTTCATGATTATTTTTTGGTATGAAGGATAGTATGGAGTATTTGATTTGTATTATCAGAACTTTACTGATTACCCACCATAGTGATTGGAAGTTGGATTATGAACCAGGTTAATATTTATTCTAAAATAAACTTATTCAGGCTAATTACCGGATGAACGAAGATCTAAATATGGTTACTCTTACAATTGTGACTTTAATTGACTTTGGGAATTTGATCTATTTAGGTTTGAGTTTATTATTATGAAACCATGGAATCAATTATCGGTTGGCCGAGTAGTAACTGCAACAGGTTACAGAAGTTAAGAACTTTGGGGACATAGGTTCAACCTTATGGCGATCTTCCTAGGATGTTAAAAGTTCTTCGAGTTTCCTAATAGCTACTTATTGTAGTGTAGATGCTTATCTCCCAAGTCCTTAGCCTAGGAAATTTATCCCTTCTAAGTGGTTGTTCTAAACTAGCTTAAGTTTATATTAGTTCTTAATGCTGCCTTGTGGGGTAATACTAAAAACAATCATGGCGGGTAATATTTAGGAAATACAAACGGGATTTTCTGTAACCTCTTAGAACATATGTATGTCTTCATTTTTGTAGTGGCCATGATTGTTGATCTTCTTATTGTTATCACTGCCAAGTTTTTTAATCAGTTTCTATTCATTCTTGGTGATTTGTTATTGTTTGTTTTGTTTTTAAAGAATTGAACCAGGGATTATGCCTCTGTTATTATGCAGCTGAAAAGGAAAAACCTAGATGAGGAACTACTCTTCTTGGTAATAATCTAATCTCTACTGTTTTGTTCTTCAAGAGGTTAAGTAGCATTTACCACTTGAGGACAAATCTATTAATTGTTTTCTACCAAACAATAATGGCACCAGATTGGATCCTATATTTGCACCAAAGGAATCACTTCTTTTTTGTATATAATTCAAATGGCGCAACGGTTACTAAAATATTCATGCCATTAACCTTGAGGATTTCATTGAAGTACTAAATTACAGAGTTTGTTGAAACACTTTCCTTAAAATGGCTTTTTTATACCTTTACTTTCTTTCATCAGTCTTCTCCTCCCATGGGTTTTACCTTGAATATGTAACTACTATACTGTAATTGTTGGTCAATAAATTCCCAAGAATCATATATTTGGCAACATGACTATTAGTTGGACCATTTTAAACTCCTATCGATAAATAGTTTAATTTCAATTTAGTATTTTTTTTGTTTGTTTACATTTGATACCCATTGAATTAGAAGCAAACTAGTAAATAGAACTCTCGATTGTTTATGCTTACTACAACTTGTGATCTCTTGCTATCTTGTTCAAGTTGTGGATATTAGTCGAACCTTAATGCCCTTGCCAGAACTTTAAACACTACGAAGCCTTTGTTTAATATTGTGCATTGAAATTTAGGATCTACACCCCTTTGTTACTGTGTGTCATGGTCATGCGATTGTGACACTATGTGAACAGCCTAAGCCCATCGCTAGCAGATATTGTCCGTTTTAGCCTGTTATGTATCGTTGTCAGCCTCACGATTTTTACGTCTGCTAGGGAGAGGTGTCCACGCCCTTGTAAGGAATGCTTCGTTCCCCTCTCCAACCAATGTGGGATCTCATACTATGCATACAAATTCACGGTAAGGAAATTTCCTTCTCAAGTGGAACAAGTAAATGCTCTTGCTAATCTTTTGAAATACATGCCATATCATATAGACTGTAGAGTTGTTTCTTCTCATCATATTGGCATCACTGCGATTGTTTCTATGCCTTTTCTTTTACTATTGAGTATTTAAGTTTTATATAGGCAACATCTATATTACGTATTGCTATCATTGTTTTGAAATTTAATTTATTGTTTTAACGCTTTCTTTTTTAGCATCTCGGCTTCGAGAAAAACTTAAATGATAGCTTCTTTTCTTGGTAATCAATTTCGTCTGTTTAGGAATGCTCTTAAAGAGGCTAATTTCCATCTACTTGTACAACTCAAGAGTCTTTAATTTAAGTAATTAAAATCACCCTAGTGGTAATGGTAACAGATATTCCAACTTTTGCATTTTAGAAATTGCTATTATCACTTTATTTTCCAACATTGTAACGGTTACTAAATATCGACGTGACTATCCACGCTGGTTAGCATTTTATAATTAATTGTGCAGACTTTGTTTAACACTTACCTAAGGACAGCTTAACCGTGTGATTTCCTTGCGGTTCGCTTTCGTCTCCATCATTTAAGAACTTGACAAATTTTCCAAAAAGGATACTCTACTTGCTTTTATTTATTTTTACGAAACCATATATGTGGCATACAGATTGCATCCATGTATGCCTGTACCGATATGCGTCTATGCATTAATTTTACAATTATTTTTTCTGTTTTTATTTTTGAAGTTGCACAATCATGCATTTGAAATTGATTCAATTAATTAGCACTAGATGAGACCTTACCTGATGAATCAGTTCACTGAAAAACCTCACTCCTTTTGTATAAATGGAGGGAATTTGTAGAAACCATTTCTCACATCTCTTATTTCTGGTATGGGCTCAAAACCTCAGGAAACCACTCAATATCTGGAGAGTTCTGGTGATGCTAAGGATTGTGCTGGTGGTGGTGACCTAGAGAGCCTCTGTAGCCCTGAGGAGTTCTCCTCGAGTGTCGATCAACTCAATCAAAACTTTAACAAATCTCTCGTTCTTAAAAGTTCGTCCTCTTGTTCATCCCCAATTGAAGTAAAAGATAGTTCTAAGCTGAGTATGAAGCAATCAGAAGTTACTGATAAGGTATAATTCTTCTCCCAACTTGTAAATATCATAATCTGTGTTGGATTTTTTCCTTAAATGGTTTTGGCAGTCTTGTTTTGATCTTGTTATTTTCCCTTACCAGGAAGATTATGATCTCTCTCCTTTCCTCAAATGAATATTTTAGCCTATTGAGTAAAAATGTACTCAAAATCTACTCATATTTAGGTGAATCCTAATATATTTCCTATTTCTTGTGTGGTGATTCTGGAAAAATTTCTAAAAGAAGGAAACTAAAAGAAGGTATGCTGCGGGAATGGGAACGACTGGTAATGAAAATTATGCATATTTGGATCTCAAACTGTCGCCTCCAGGGGTCTACTTAAGGGGTAAATCATCGAATGAATCGAAATCGTCATCCCCAAAATCTCAAGACTCATGCGTATCTGCGGAGGTCGAGTCAAATGTAAACTTGGAGAATAACCTTGAAGTTGAAGGTTCGCCCTTAATTGTGATGGGATGTACTTTTTGCCTGCTTTATGTGATGGTGACAGATGATGATCCCAGATGCCCTATATGCAAAAATTCTGGCTTGCTCGACATTTTCCGTGGAAATCAGCCGAAGAGATCGAGAAAAAAC

mRNA sequence

ATTTCTGAATCCCAATTTGGGGTTTTCGACGAAACGGGTGCTTTGCGGCAATCTCATCTCCATCCATTTTGCTCATCAAATGATCTTCAATCGCTACATCTTGAAGATATGTTCGAGAAAACGAGAATGGAAGTGGAGAAAGGGAAGAAAAGGAAGGTTCGGGTTGTCTTTAATTCCAGTTTCCGCAAAAGGATTGGCGATTTTTCTACCAATAATATGACTATAGAGGTTTGGATCATCGCCGTTTGTGGCTTCTCGATGGCGGTCAAGTTGGCTAGGAGGGGAGGGTGCTGGTTAATCGGCGATCGGTTGATTGAGTCTTGTAGGGATTATGCCTCTGTTATTATGCAGCTGAAAAGGAAAAACCTAGATGAGGAACTACTCTTCTTGAAACCATTTCTCACATCTCTTATTTCTGGTATGGGCTCAAAACCTCAGGAAACCACTCAATATCTGGAGAGTTCTGGTGATGCTAAGGATTGTGCTGGTGGTGGTGACCTAGAGAGCCTCTGTAGCCCTGAGGAGTTCTCCTCGAGTGTCGATCAACTCAATCAAAACTTTAACAAATCTCTCGTTCTTAAAAGTTCGTCCTCTTGTTCATCCCCAATTGAAGTAAAAGATAGTTCTAAGCTGAGTATGAAGCAATCAGAAGTTACTGATAAGGAAACTAAAAGAAGGTATGCTGCGGGAATGGGAACGACTGGTAATGAAAATTATGCATATTTGGATCTCAAACTGTCGCCTCCAGGGGTCTACTTAAGGGGTAAATCATCGAATGAATCGAAATCGTCATCCCCAAAATCTCAAGACTCATGCGTATCTGCGGAGGTCGAGTCAAATGTAAACTTGGAGAATAACCTTGAAGTTGAAGGTTCGCCCTTAATTGTGATGGGATGTACTTTTTGCCTGCTTTATGTGATGGTGACAGATGATGATCCCAGATGCCCTATATGCAAAAATTCTGGCTTGCTCGACATTTTCCGTGGAAATCAGCCGAAGAGATCGAGAAAAAAC

Coding sequence (CDS)

ATTTCTGAATCCCAATTTGGGGTTTTCGACGAAACGGGTGCTTTGCGGCAATCTCATCTCCATCCATTTTGCTCATCAAATGATCTTCAATCGCTACATCTTGAAGATATGTTCGAGAAAACGAGAATGGAAGTGGAGAAAGGGAAGAAAAGGAAGGTTCGGGTTGTCTTTAATTCCAGTTTCCGCAAAAGGATTGGCGATTTTTCTACCAATAATATGACTATAGAGGTTTGGATCATCGCCGTTTGTGGCTTCTCGATGGCGGTCAAGTTGGCTAGGAGGGGAGGGTGCTGGTTAATCGGCGATCGGTTGATTGAGTCTTGTAGGGATTATGCCTCTGTTATTATGCAGCTGAAAAGGAAAAACCTAGATGAGGAACTACTCTTCTTGAAACCATTTCTCACATCTCTTATTTCTGGTATGGGCTCAAAACCTCAGGAAACCACTCAATATCTGGAGAGTTCTGGTGATGCTAAGGATTGTGCTGGTGGTGGTGACCTAGAGAGCCTCTGTAGCCCTGAGGAGTTCTCCTCGAGTGTCGATCAACTCAATCAAAACTTTAACAAATCTCTCGTTCTTAAAAGTTCGTCCTCTTGTTCATCCCCAATTGAAGTAAAAGATAGTTCTAAGCTGAGTATGAAGCAATCAGAAGTTACTGATAAGGAAACTAAAAGAAGGTATGCTGCGGGAATGGGAACGACTGGTAATGAAAATTATGCATATTTGGATCTCAAACTGTCGCCTCCAGGGGTCTACTTAAGGGGTAAATCATCGAATGAATCGAAATCGTCATCCCCAAAATCTCAAGACTCATGCGTATCTGCGGAGGTCGAGTCAAATGTAAACTTGGAGAATAACCTTGAAGTTGAAGGTTCGCCCTTAATTGTGATGGGATGTACTTTTTGCCTGCTTTATGTGATGGTGACAGATGATGATCCCAGATGCCCTATATGCAAAAATTCTGGCTTGCTCGACATTTTCCGTGGAAATCAGCCGAAGAGATCGAGAAAAAAC

Protein sequence

ISESQFGVFDETGALRQSHLHPFCSSNDLQSLHLEDMFEKTRMEVEKGKKRKVRVVFNSSFRKRIGDFSTNNMTIEVWIIAVCGFSMAVKLARRGGCWLIGDRLIESCRDYASVIMQLKRKNLDEELLFLKPFLTSLISGMGSKPQETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEVKDSSKLSMKQSEVTDKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRSRKN

Homology

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BLAST of Carg01668 vs. NCBI nr
Match: XP_022993469.1 (uncharacterized protein LOC111489470 [Cucurbita maxima])

HSP 1 Score: 417.2 bits (1071), Expect = 5.5e-113
Identity = 236/303 (77.89%), Postives = 247/303 (81.52%), Query Frame = 0


Query: 37  MFEKTRMEVEKGKKRKVRVVFNSSFRKRIGDFSTNNMTIEVWIIAVCGFSMAVKLARRGG 96
           MFEKTRMEVEKGKKRK+RVVFNS FRKRIGDFSTNNMTI V             L  R  
Sbjct: 1   MFEKTRMEVEKGKKRKIRVVFNSDFRKRIGDFSTNNMTIRV-------------LDHRHL 60

Query: 97  CWLIGDRLIESCRDYASVIMQLKRKNLDEELLFLKPFLTSLISGMGSKPQETTQYLESSG 156
             L G ++ +  R      + + R+++D  L  +               +ETTQYLESSG
Sbjct: 61  WILDGGQVGKEGR------VLVNRRSVDRVLQRI--------------GKETTQYLESSG 120

Query: 157 DAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEVKDSSKLSMKQS 216
           DAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSS SSPIEVK SSKLSMKQS
Sbjct: 121 DAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSRSSPIEVKYSSKLSMKQS 180

Query: 217 EVTD-KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSA 276
           EVTD KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSA
Sbjct: 181 EVTDKKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSA 240

Query: 277 EVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRS 336
           EVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRS
Sbjct: 241 EVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRS 270

Query: 337 RKN 339
           RKN
Sbjct: 301 RKN 270

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BLAST of Carg01668 vs. NCBI nr
Match: XP_022939375.1 (uncharacterized protein LOC111445310 isoform X3 [Cucurbita moschata])

HSP 1 Score: 383.6 bits (984), Expect = 6.7e-103
Identity = 210/235 (89.36%), Postives = 211/235 (89.79%), Query Frame = 0


Query: 116 MQLKRKNLDEELLFLK----------PFLTSL-ISGMGSKPQETTQYLESSGDAKDCAGG 175
           MQLKRKNLDEELLFL+          P      IS    K  ETTQYLESSGDAKDCAGG
Sbjct: 1   MQLKRKNLDEELLFLRFPRPCKECFVPLSNQCGISHYTYKFLETTQYLESSGDAKDCAGG 60

Query: 176 GDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEVKDSSKLSMKQSEVTD-KET 235
           GDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSS SSPIEVKDSSKLSMKQSEVTD KET
Sbjct: 61  GDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSRSSPIEVKDSSKLSMKQSEVTDKKET 120

Query: 236 KRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSAEVESNVNL 295
           KRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSAEVESNVNL
Sbjct: 121 KRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCVSAEVESNVNL 180

Query: 296 ENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRSRKN 339
           ENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRSRKN
Sbjct: 181 ENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPKRSRKN 235

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BLAST of Carg01668 vs. NCBI nr
Match: XP_022939372.1 (uncharacterized protein LOC111445310 isoform X1 [Cucurbita moschata] >XP_022939373.1 uncharacterized protein LOC111445310 isoform X1 [Cucurbita moschata])

HSP 1 Score: 380.9 bits (977), Expect = 4.4e-102
Identity = 210/245 (85.71%), Postives = 211/245 (86.12%), Query Frame = 0


Query: 116 MQLKRKNLDEELLFL------KPFLTSLISGMG---------------SKPQETTQYLES 175
           MQLKRKNLDEELLFL      K     L +  G                  QETTQYLES
Sbjct: 1   MQLKRKNLDEELLFLRFPRPCKECFVPLSNQCGISHYTYKFLVRKFPSQVEQETTQYLES 60

Query: 176 SGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEVKDSSKLSMK 235
           SGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSS SSPIEVKDSSKLSMK
Sbjct: 61  SGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSRSSPIEVKDSSKLSMK 120

Query: 236 QSEVTD-KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCV 295
           QSEVTD KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCV
Sbjct: 121 QSEVTDKKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSSPKSQDSCV 180

Query: 296 SAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPK 339
           SAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPK
Sbjct: 181 SAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGNQPK 240

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BLAST of Carg01668 vs. NCBI nr
Match: XP_022939374.1 (uncharacterized protein LOC111445310 isoform X2 [Cucurbita moschata])

HSP 1 Score: 368.2 bits (944), Expect = 2.9e-98
Identity = 192/194 (98.97%), Postives = 192/194 (98.97%), Query Frame = 0


Query: 146 QETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEV 205
           QETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSS SSPIEV
Sbjct: 45  QETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSRSSPIEV 104

Query: 206 KDSSKLSMKQSEVTD-KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSS 265
           KDSSKLSMKQSEVTD KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSS
Sbjct: 105 KDSSKLSMKQSEVTDKKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSS 164

Query: 266 SPKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLL 325
           SPKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLL
Sbjct: 165 SPKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLL 224

Query: 326 DIFRGNQPKRSRKN 339
           DIFRGNQPKRSRKN
Sbjct: 225 DIFRGNQPKRSRKN 238

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BLAST of Carg01668 vs. NCBI nr
Match: XP_022939377.1 (uncharacterized protein LOC111445310 isoform X5 [Cucurbita moschata])

HSP 1 Score: 365.9 bits (938), Expect = 1.4e-97
Identity = 191/193 (98.96%), Postives = 191/193 (98.96%), Query Frame = 0


Query: 147 ETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEVK 206
           ETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSS SSPIEVK
Sbjct: 9   ETTQYLESSGDAKDCAGGGDLESLCSPEEFSSSVDQLNQNFNKSLVLKSSSSRSSPIEVK 68

Query: 207 DSSKLSMKQSEVTD-KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSS 266
           DSSKLSMKQSEVTD KETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSS
Sbjct: 69  DSSKLSMKQSEVTDKKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSS 128

Query: 267 PKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLD 326
           PKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLD
Sbjct: 129 PKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLD 188

Query: 327 IFRGNQPKRSRKN 339
           IFRGNQPKRSRKN
Sbjct: 189 IFRGNQPKRSRKN 201

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BLAST of Carg01668 vs. TAIR10
Match: AT3G11600.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 6.2e-10
Identity = 38/93 (40.86%), Postives = 55/93 (59.14%), Query Frame = 0


Query: 242 LDLKLSPPGVYLRG----KSSNESKSSSPKSQDSCVSAEVESNVNLENNLEVEGSPLIVM 301
           L L LSPP          +S N S ++SP    SCVS+E     N E N  +  + ++++
Sbjct: 13  LRLNLSPPPSQASQMSLVRSPNRSNTTSP---SSCVSSE----TNQEENETI--TSMVLV 72

Query: 302 GCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGN 331
           GC  CL+YVM++DDDP+CP CK++ LLD  + N
Sbjct: 73  GCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQEN 96

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BLAST of Carg01668 vs. TAIR10
Match: AT5G06270.1 (unknown protein)

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-07
Identity = 19/41 (46.34%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 290 EGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLDIFRGN 331
           E + ++++GC  CL+YVM+++DDP+CP CK++ LLD    N
Sbjct: 62  ETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHEN 102

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BLAST of Carg01668 vs. TAIR10
Match: AT3G52561.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-05
Identity = 29/77 (37.66%), Postives = 42/77 (54.55%), Query Frame = 0


Query: 251 VYLRGKSSNESKSS-SPKSQDSCV--SAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVM 310
           V   G+    S SS +  SQ+SC+  + EV+  V      E E   ++VMGC  C++YVM
Sbjct: 21  VVANGRFEGRSPSSDTSSSQNSCLTRTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVM 80

Query: 311 VTDDDPRCPICKNSGLL 325
           V  +  RCP CK + L+
Sbjct: 81  VLQERQRCPKCKCTDLI 97

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BLAST of Carg01668 vs. TAIR10
Match: AT5G22270.1 (unknown protein)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-05
Identity = 18/42 (42.86%), Postives = 29/42 (69.05%), Query Frame = 0


Query: 295 IVMGCTFCLLYVMVT-DDDPRCPICKNSGLLDIFRGNQPKRS 336
           +V+GC  C++Y++ + ++DPRCP C +  LLD   GN  K+S
Sbjct: 50  VVVGCPNCIMYIITSLENDPRCPRCNSHVLLDFLTGNHSKKS 91

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BLAST of Carg01668 vs. TrEMBL
Match: tr|A0A0A0KE76|A0A0A0KE76_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046290 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.0e-70
Identity = 151/199 (75.88%), Postives = 165/199 (82.91%), Query Frame = 0


Query: 141 MGSKPQETTQYLESSGDAKDCAGGGDLES-LCSPEEFSSSVDQLNQNFNKSLVLKSSSSC 200
           MGSKPQ+TTQYLE +  AKDC  G DLES + SPE+FS SVDQLNQ+FNKSLVLK SSS 
Sbjct: 1   MGSKPQDTTQYLEHADAAKDCC-GDDLESDVHSPEDFSLSVDQLNQDFNKSLVLKGSSS- 60

Query: 201 SSPIEVKDSSKLSMKQSEVTDKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSN 260
              IE+KDSS  +M +S+   KETKRRYA   GT  N+N AYLDLKLSPPGVY RGKSSN
Sbjct: 61  ---IELKDSSSQTMMKSDTDKKETKRRYAVETGTAANQNDAYLDLKLSPPGVYSRGKSSN 120

Query: 261 ESKSSSPKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICK 320
           ESKSSSP+SQDSC+SAEVESN+NLE+NL VE SPLIVMGCTFCLLYVMVTD DPRCP CK
Sbjct: 121 ESKSSSPRSQDSCISAEVESNLNLEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCK 180

Query: 321 NSGLLDIFRGNQPKRSRKN 339
            SGLLD FRGNQ KRSRKN
Sbjct: 181 RSGLLDAFRGNQVKRSRKN 194

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BLAST of Carg01668 vs. TrEMBL
Match: tr|A0A1S3C4Y0|A0A1S3C4Y0_CUCME (uncharacterized protein LOC103496521 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.6e-68
Identity = 149/197 (75.63%), Postives = 161/197 (81.73%), Query Frame = 0


Query: 143 SKPQETTQYLESSGDAKDCAGGGDLES-LCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSS 202
           +KP +TTQYLE +  AKDC  G DLES + SPE+FS SVDQLNQ+FNKSLVLK SSS   
Sbjct: 2   TKPLDTTQYLEHADAAKDCC-GDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSS--- 61

Query: 203 PIEVKDSSKLSMKQSEVTDKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNES 262
            IE+KDSS L+M +SE   KETKRRYA   GT  NEN AYLDLKLSPPGVY RGKSSNES
Sbjct: 62  -IELKDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNES 121

Query: 263 KSSSPKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNS 322
           KSSSP SQDSC+SAEVESN+N E+NL VE SPLIVMGCTFCLLYVMVTD DPRCP CK S
Sbjct: 122 KSSSPSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRS 181

Query: 323 GLLDIFRGNQPKRSRKN 339
           GLLD FRGNQ KRSRKN
Sbjct: 182 GLLDAFRGNQLKRSRKN 193

[Close]

BLAST of Carg01668 vs. TrEMBL
Match: tr|A0A1S4E168|A0A1S4E168_CUCME (uncharacterized protein LOC103496521 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 2.3e-67
Identity = 149/193 (77.20%), Postives = 160/193 (82.90%), Query Frame = 0


Query: 147 ETTQYLESSGDAKDCAGGGDLES-LCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEV 206
           +TTQYLE +  AKDC  G DLES + SPE+FS SVDQLNQ+FNKSLVLK SSS    IE+
Sbjct: 14  DTTQYLEHADAAKDCC-GDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSS----IEL 73

Query: 207 KDSSKLSMKQSEVTDKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSS 266
           KDSS L+M +SE TDKETKRRYA   GT  NEN AYLDLKLSPPGVY RGKSSNESKSSS
Sbjct: 74  KDSSNLTMMKSE-TDKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSS 133

Query: 267 PKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLD 326
           P SQDSC+SAEVESN+N E+NL VE SPLIVMGCTFCLLYVMVTD DPRCP CK SGLLD
Sbjct: 134 PSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 193

Query: 327 IFRGNQPKRSRKN 339
            FRGNQ KRSRKN
Sbjct: 194 AFRGNQLKRSRKN 200

[Close]

BLAST of Carg01668 vs. TrEMBL
Match: tr|A0A1S3C4C1|A0A1S3C4C1_CUCME (uncharacterized protein LOC103496521 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.0e-67
Identity = 147/193 (76.17%), Postives = 158/193 (81.87%), Query Frame = 0


Query: 147 ETTQYLESSGDAKDCAGGGDLES-LCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEV 206
           +TTQYLE +  AKDC  G DLES + SPE+FS SVDQLNQ+FNKSLVLK SSS    IE+
Sbjct: 10  DTTQYLEHADAAKDCC-GDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSS----IEL 69

Query: 207 KDSSKLSMKQSEVTDKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSS 266
           KDSS L+M +SE   KETKRRYA   GT  NEN AYLDLKLSPPGVY RGKSSNESKSSS
Sbjct: 70  KDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSS 129

Query: 267 PKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLD 326
           P SQDSC+SAEVESN+N E+NL VE SPLIVMGCTFCLLYVMVTD DPRCP CK SGLLD
Sbjct: 130 PSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 189

Query: 327 IFRGNQPKRSRKN 339
            FRGNQ KRSRKN
Sbjct: 190 AFRGNQLKRSRKN 197

[Close]

BLAST of Carg01668 vs. TrEMBL
Match: tr|A0A1S3C387|A0A1S3C387_CUCME (uncharacterized protein LOC103496521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496521 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 3.0e-67
Identity = 147/193 (76.17%), Postives = 158/193 (81.87%), Query Frame = 0


Query: 147 ETTQYLESSGDAKDCAGGGDLES-LCSPEEFSSSVDQLNQNFNKSLVLKSSSSCSSPIEV 206
           +TTQYLE +  AKDC  G DLES + SPE+FS SVDQLNQ+FNKSLVLK SSS    IE+
Sbjct: 14  DTTQYLEHADAAKDCC-GDDLESGVHSPEDFSLSVDQLNQDFNKSLVLKGSSS----IEL 73

Query: 207 KDSSKLSMKQSEVTDKETKRRYAAGMGTTGNENYAYLDLKLSPPGVYLRGKSSNESKSSS 266
           KDSS L+M +SE   KETKRRYA   GT  NEN AYLDLKLSPPGVY RGKSSNESKSSS
Sbjct: 74  KDSSNLTMMKSETDKKETKRRYAVETGTAANENDAYLDLKLSPPGVYSRGKSSNESKSSS 133

Query: 267 PKSQDSCVSAEVESNVNLENNLEVEGSPLIVMGCTFCLLYVMVTDDDPRCPICKNSGLLD 326
           P SQDSC+SAEVESN+N E+NL VE SPLIVMGCTFCLLYVMVTD DPRCP CK SGLLD
Sbjct: 134 PSSQDSCISAEVESNLNSEDNLRVESSPLIVMGCTFCLLYVMVTDADPRCPKCKRSGLLD 193

Query: 327 IFRGNQPKRSRKN 339
            FRGNQ KRSRKN
Sbjct: 194 AFRGNQLKRSRKN 201

The following BLAST results are available for this feature:

BLAST of Carg01668 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022993469.1	5.5e-113	77.89	uncharacterized protein LOC111489470 [Cucurbita maxima]	[more]
XP_022939375.1	6.7e-103	89.36	uncharacterized protein LOC111445310 isoform X3 [Cucurbita moschata]	[more]
XP_022939372.1	4.4e-102	85.71	uncharacterized protein LOC111445310 isoform X1 [Cucurbita moschata] >XP_0229393...	[more]
XP_022939374.1	2.9e-98	98.97	uncharacterized protein LOC111445310 isoform X2 [Cucurbita moschata]	[more]
XP_022939377.1	1.4e-97	98.96	uncharacterized protein LOC111445310 isoform X5 [Cucurbita moschata]	[more]

BLAST of Carg01668 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G11600.1	6.2e-10	40.86	unknown protein	[more]
AT5G06270.1	6.4e-07	46.34	unknown protein	[more]
AT3G52561.1	4.6e-05	37.66	unknown protein	[more]
AT5G22270.1	4.6e-05	42.86	unknown protein	[more]

BLAST of Carg01668 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg01668 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KE76\|A0A0A0KE76_CUCSA	1.0e-70	75.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G046290 PE=4 SV=1	[more]
tr\|A0A1S3C4Y0\|A0A1S3C4Y0_CUCME	1.6e-68	75.63	uncharacterized protein LOC103496521 isoform X4 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S4E168\|A0A1S4E168_CUCME	2.3e-67	77.20	uncharacterized protein LOC103496521 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C4C1\|A0A1S3C4C1_CUCME	3.0e-67	76.17	uncharacterized protein LOC103496521 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A1S3C387\|A0A1S3C387_CUCME	3.0e-67	76.17	uncharacterized protein LOC103496521 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg01668-RA	Carg01668-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..273
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..273
None	No IPR available	PANTHER	PTHR33177	FAMILY NOT NAMED	coord: 240..335
None	No IPR available	PANTHER	PTHR33177:SF8	GB\|AAF02129.1	coord: 240..335

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg01668	Cla013683	Watermelon (97103) v1	carwmB0826
Carg01668	Csa6G046280	Cucumber (Chinese Long) v2	carcuB0850
Carg01668	MELO3C019908	Melon (DHL92) v3.5.1	carmeB0823
Carg01668	ClCG08G008390	Watermelon (Charleston Gray)	carwcgB0805
Carg01668	CSPI06G04070	Wild cucumber (PI 183967)	carcpiB0870
Carg01668	Cucsa.364540	Cucumber (Gy14) v1	carcgyB0955
Carg01668	CmaCh04G025090	Cucurbita maxima (Rimu)	carcmaB1150
Carg01668	CmaCh15G005290	Cucurbita maxima (Rimu)	carcmaB1148
Carg01668	CmoCh15G005380	Cucurbita moschata (Rifu)	carcmoB1118
Carg01668	CmoCh04G026260	Cucurbita moschata (Rifu)	carcmoB1121
Carg01668	Lsi08G006360	Bottle gourd (USVL1VR-Ls)	carlsiB758
Carg01668	Cp4.1LG13g10580	Cucurbita pepo (Zucchini)	carcpeB1157
Carg01668	CsGy6G004040	Cucumber (Gy14) v2	carcgybB0824
Carg01668	MELO3C019908.2	Melon (DHL92) v3.6.1	carmedB0834
Carg01668	CsaV3_6G004360	Cucumber (Chinese Long) v3	carcucB0874
Carg01668	Cla97C08G151140	Watermelon (97103) v2	carwmbB0864
Carg01668	Bhi04G001311	Wax gourd	carwgoB0965

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg01668	Carg15850	Silver-seed gourd	carcarB076

The following block(s) are covering this gene:


Gene	Organism	Block
Carg01668	Cucurbita pepo (Zucchini)	carcpeB1158