Csa6G046280 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa6G046280
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionUnknown protein
LocationChr6 : 3728902 .. 3730412 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGCTGATCAGAAAGGTATTTCGGGAACCCCTTTAAAGCATTGTTTGTTTTGATTGTGAATAAGACAGTATTTAGATTGTGGGGTTTGTTTTGACGTAACTGAACTTTTGGGTGGGAGATATGAACTTAGAAATCGTGGGTGGAGATTATATTTAGAATTGGATAATTGGATTTATGGTTCTGATTGGACTAAAGCTTTGTTGGCTGAAATTTAGTGAGATTTCATTGCTGGTTTTGTTGCGTCTATCAGAGCCTCCTTGAATATTAGAAACCCACCTACCTTCATGACAATTATTTGTAGATTTCTCATATGAGTGTCTATGAAGTCTTTAGCCTTGATTGTAGCTTCTGGGGAATGGTAAGAGTTGAGTTCTCGAGTCTTTAATCGTGTAAGCTTTGTTGGAATGACATGAAGTATTTAGCTGTCTTGCAGTGAGATCGATAGGTTTGAATGTAAATCACAAGAAACAGAGGAAAAAAGAAAGGAAAGAAAGATACAGTGCAACTTCTGAATGTGCTTAACAAAGTTAAAGATCAATAAATTTTTACCGATACCGGAGACAGGATCTTTCATTTGAACTTTGGAGAAGATGGTGTATGAGAATGGCGAAACAATATTCACCTTTTGTTTCCAATTGATATCTTTCTTCAATGAAAATGTATGATGAAGATATTGTTATGTCTTGAGTATCATTACTGGTGTTAAAACAGAGTGCAAGCATAAGAAATAAATGAGTGCTTGAAATAGTTAAAGTAGAAAGTGAATTTAAGTACATGATTATTCAACCTCGAAATTTAGTCCACTTGTACTAATCTCCATATGACCATTGAAAATAACGATCTTACAAAATTTTCCGGAAACACGTACATGCTAGTATCTACCATGTGACCTTCATCCTTCTCAAATTCAGGTCTTCTGTCATTTATCTTAATGATATCGCTGCTTAAGAGTCCAGAAGCTTCATGTTTTAGAATTCTGGAGTATTGAAGTTAGTTGTTGGGTTCACCTTTAAGGTAAAATTTACTATTATGGGATTTATTTTTAAAGCTTTGTTGAAAAGTAAATGTAAAGTGTTAACTTGATGTTGCATACCATCATGTTGTGATGTTATGAACTTTTGATTCACAGAGGATATCAGGAAGCGTTCACAATTGAGTATGGAATGACCCTGCCACTGGTTA

mRNA sequence

ATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGCTGA

Coding sequence (CDS)

ATGGGTGTGTTTGCAGCAATGGGTAATCTCTATCTCCTTCCATTTTACTCGTTAGAAGACCCAATCGCCATATCTTTACCTGAAGATATGTACGACAAAATGAGAATGGAAGTGGAGAAATGGAAGAAAAGGACGATTTGGGTTGTCTTTAATTCCAATTTCCGCAAAAGGGTTGTTGATTCTTTTACCAATAGAGTGGATATGGAGTTTTGGGTTATCGGCATTTATGGATTCTCGACTGCTTTCAAGTTAGCGAGGAGGAAAGTGGTTGTGGCGATATGGCTGGCTTTCTATTGGTTAGTCGGCGATCGATTGACTGCGTCTTGTAGCTGA

Protein sequence

MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVDSFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS*
Homology
[Close]
BLAST of Csa6G046280 vs. TrEMBL
Match: A0A0A0K8K0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046280 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 3.3e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60
           MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD
Sbjct: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60

Query: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 111
           SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS
Sbjct: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 110

[Close]
BLAST of Csa6G046280 vs. NCBI nr
Match: gi|700190846|gb|KGN46050.1| (hypothetical protein Csa_6G046280 [Cucumis sativus])

HSP 1 Score: 228.8 bits (582), Expect = 4.7e-57
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 

Query: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60
           MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD
Sbjct: 1   MGVFAAMGNLYLLPFYSLEDPIAISLPEDMYDKMRMEVEKWKKRTIWVVFNSNFRKRVVD 60

Query: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 111
           SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS
Sbjct: 61  SFTNRVDMEFWVIGIYGFSTAFKLARRKVVVAIWLAFYWLVGDRLTASCS 110

The following BLAST results are available for this feature:
BLAST of Csa6G046280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K8K0_CUCSA3.3e-57100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G046280 PE=4 SV=1[more]
BLAST of Csa6G046280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190846|gb|KGN46050.1|4.7e-57100.00hypothetical protein Csa_6G046280 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa6G046280.1Csa6G046280.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa6G046280MELO3C019908.2Melon (DHL92) v3.6.1cumedB456
Csa6G046280Bhi04G001312Wax gourdcuwgoB588
Csa6G046280CSPI06G04070Wild cucumber (PI 183967)cpicuB314
Csa6G046280Carg01668Silver-seed gourdcarcuB0850
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa6G046280Cucurbita maxima (Rimu)cmacuB308
Csa6G046280Cucurbita maxima (Rimu)cmacuB767
Csa6G046280Cucurbita moschata (Rifu)cmocuB297
Csa6G046280Cucurbita moschata (Rifu)cmocuB760
Csa6G046280Melon (DHL92) v3.5.1cumeB474
Csa6G046280Watermelon (Charleston Gray)cuwcgB497
Csa6G046280Watermelon (97103) v1cuwmB457
Csa6G046280Cucurbita pepo (Zucchini)cpecuB197
Csa6G046280Cucurbita pepo (Zucchini)cpecuB459
Csa6G046280Bottle gourd (USVL1VR-Ls)culsiB478
Csa6G046280Cucumber (Gy14) v2cgybcuB282
Csa6G046280Silver-seed gourdcarcuB0066
Csa6G046280Watermelon (97103) v2cuwmbB488
Csa6G046280Cucumber (Gy14) v1cgycuB511