Lsi07G009540 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi07G009540
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionB12D-like protein
Locationchr07 : 12011672 .. 12013603 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTTATTATGTGATTTAATTTCCAATTGAAGGTTTATCCGTTACTGGCGGCCATGGGATTTGTGACAAGTATGTGCGTGTTTCAACTTACAAGAAACGTTCTCATAAATCCTGACGTCAGGTACTCCTATTTATTTATTTATTTATTATTATTTTTTAAAATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATCTGTTCAATTCATTATTTTCAATAAATTAATTTTGAATGTTTCACTTTTTTGGAAATATTATATTTAAATGAAAATAATATGTAAACGCGTATTACAAAATGCTCCAATATTATATAGGAAAATTATTATAAATAAAAATAATATCAAACTATTTACAAATATAGAAAAATTCTATCGCGATAAAATTCTATCGCTTTCTCTATTGCTCAAGCAAATAAATTCTATCGCTTGAACGATAGAAAGTGATAGAATTCTATCGCGTTCTATAAAAAATAGACGGTAAATTTTTTCTATATTTGTAAATAATTTGACTCATTTTACTATATTTGAAAACAACCTTATTATTTATAGGATTTAAAATATTACTGCAGGTTAATAAGATTTTTTAAAATTTTCATTATTCAAATTTTGTAATTTTTAAGAAAAATTAGAGGTTATTTGTAGAGATTAATAGAGATATGCAACTTAGGGAGATTATGGACATCGAGTTAGAATATTTTAATTGGACCATTGATAATAAAATCTCAAAAATTAAAGTTTGTTTGTTAAGTTTTTTTTTTTCTTTTCTTAAAAAAAAAAAGTTATTCTCAATCTCATTCACTAGCTTTTTTTTTATCCTTTATTTTGTACTTTGCTTTTGAAAATTCTTTTTATCTTTATTCTTTTAGCTAACTTTCAACTTATTCATCTTTGAAAGACTCAATTTTATTATTAATAAATTGATCATTTTCAACTAAGCTATTTCATGTTAAATTTATCATATATATAGGTAATATCAAGGGAGATTTTAAAAAATAGAAAAACAAAGAAAACTATTTACAGAAAATAGTAAAATTTGTAGGTAGTTGTGATAGACGCTGATAGAAGTCTATCAAGGTCTATCAGTAATAGAAATGATAGAAGTCTATCACTAATAGATGCTGATATAAGTCTATCAATGTCTATCAGTATTTTTTTTTGCTATTTTTTGTAAATAGTTTGAAATTCTTTCTATCCGTGAAAATTTTCCTAATATCAATTGGGCATGCCACTCAAAATAAATGTAATTTGTTGATAAAAGGACAAGAAAAATGCATATATCAAGTAGCAGGTTCATGAATCAAATTATGTTAATAATAATAATAATAATAATACTAATTTAATGAAATATCAACTCTTTGTTATAAAAGTTTTAACAATTACATAAGGGCAAAATTGAAAAATGACATAAAATATTAAAATTGATTGCTTATATTTAACCTATTTTCTAAACCATTGTCATATATATATATATAAAGAAAATTTAATTTAATTTAATATGTGTAATATAAAAAAGGAATGTATTTTATTTTTGTAGAGTGAACAAAGCACACCGAAAAATGGGAGTGTTGGAGAACGGAGAAGAAGGAGAGAAATATTCAGAGCACAGCCTCCGGCGGTTCCTCCGCACACGGCCCCCTGAAATAATGCCAACTATTAATCACTATTTTTCTCAAGACAAATAATTTCAATTAGCATATACTCAACTTAGTCGCATTTTCCTTTATTCCTTTTATATTCTATACTTTTTGTTTTGCTTTGCTTTGTCCATTTTTTTTTCTTCGATAAATGTAAGGTGGCTTGCCTACGTACACATTGAGAATAATAGCAATGTCTTATGTTCATATATGATCTCGTTTCTATCATAATTAATAATAATTTTGACTTATATTCCTTTTTG

mRNA sequence

ATGGGTTTATCCGTTACTGGCGGCCATGGGATTTGTGACAAAGTGAACAAAGCACACCGAAAAATGGGAGTGTTGGAGAACGGAGAAGAAGGAGAGAAATATTCAGAGCACAGCCTCCGGCGGTTCCTCCGCACACGGCCCCCTGAAATAATGCCAACTATTAATCACTATTTTTCTCAAGACAAATAATTTCAATTAGCATATACTCAACTTAGTCGCATTTTCCTTTATTCCTTTTATATTCTATACTTTTTGTTTTGCTTTGCTTTGTCCATTTTTTTTTCTTCGATAAATGTAAGGTGGCTTGCCTACGTACACATTGAGAATAATAGCAATGTCTTATGTTCATATATGATCTCGTTTCTATCATAATTAATAATAATTTTGACTTATATTCCTTTTTG

Coding sequence (CDS)

ATGGGTTTATCCGTTACTGGCGGCCATGGGATTTGTGACAAAGTGAACAAAGCACACCGAAAAATGGGAGTGTTGGAGAACGGAGAAGAAGGAGAGAAATATTCAGAGCACAGCCTCCGGCGGTTCCTCCGCACACGGCCCCCTGAAATAATGCCAACTATTAATCACTATTTTTCTCAAGACAAATAA

Protein sequence

MGLSVTGGHGICDKVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK
Homology
[Close]
BLAST of Lsi07G009540 vs. TrEMBL
Match: A0A0A0L0W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129030 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 9.1e-17
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 62
          +V K+HR+MGVL+N EEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD
Sbjct: 23 RVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 70

[Close]
BLAST of Lsi07G009540 vs. TrEMBL
Match: B9N6M9_POPTR (Germination family protein OS=Populus trichocarpa GN=POPTR_0017s13320g PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 5.0e-15
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
          +VNKA+R MGVLEN EEGE+Y+EH LR+FLRTRPPEIMPT+NH+FS+DK
Sbjct: 38 RVNKANRGMGVLENKEEGERYAEHGLRKFLRTRPPEIMPTVNHFFSEDK 86

[Close]
BLAST of Lsi07G009540 vs. TrEMBL
Match: A0A067JNC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25584 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.5e-15
Identity = 36/49 (73.47%), Postives = 45/49 (91.84%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
          ++NKAHR+M VLEN +EGEKY+EH LR+FLRTRPPE+MP INH+FSQD+
Sbjct: 38 RINKAHRRMAVLENEDEGEKYAEHGLRKFLRTRPPEVMPAINHFFSQDE 86

[Close]
BLAST of Lsi07G009540 vs. TrEMBL
Match: A0A0L9U2X2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g013500 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.5e-15
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
          ++NK  R M VL+N EEGEKY+EHSLR+FLRTRPPEIMPTINH+FSQDK
Sbjct: 38 RINKTRRSMAVLDNREEGEKYAEHSLRKFLRTRPPEIMPTINHFFSQDK 86

[Close]
BLAST of Lsi07G009540 vs. TrEMBL
Match: A0A0S3RRM9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G034700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 8.5e-15
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1 

Query: 14  KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
           ++NK  R M VL+N EEGEKY+EHSLR+FLRTRPPEIMPTINH+FSQDK
Sbjct: 94  RINKTRRSMAVLDNREEGEKYAEHSLRKFLRTRPPEIMPTINHFFSQDK 142

[Close]
BLAST of Lsi07G009540 vs. TAIR10
Match: AT3G29970.1 (AT3G29970.1 B12D protein)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-14
Identity = 28/48 (58.33%), Postives = 43/48 (89.58%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 62
          ++NK HRKMG+LEN +EGEKY++H+ R++LRTR P++MP++N +FSQ+
Sbjct: 38 RINKEHRKMGILENKDEGEKYAQHNFRKYLRTRQPQVMPSLNRFFSQE 85

[Close]
BLAST of Lsi07G009540 vs. TAIR10
Match: AT3G48140.1 (AT3G48140.1 B12D protein)

HSP 1 Score: 53.5 bits (127), Expect = 5.3e-08
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1 

Query: 4  SVTGGHGI-CDKVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFS 60
          ++TG   + C K N+A    G+L+N  EGEKY E+ LR+F+R + PEIMP +N +F+
Sbjct: 31 NITGNPEVRCTKENRA---AGILDNHAEGEKYKENFLRKFVRNKKPEIMPGLNKFFT 84

[Close]
BLAST of Lsi07G009540 vs. NCBI nr
Match: gi|659129221|ref|XP_008464582.1| (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-17
Identity = 45/49 (91.84%), Postives = 47/49 (95.92%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
          +VNKAHR+MGVLEN EEGEKYSEHSLRRFLRTRPPEIMPTIN YFSQDK
Sbjct: 38 RVNKAHRRMGVLENEEEGEKYSEHSLRRFLRTRPPEIMPTINRYFSQDK 86

[Close]
BLAST of Lsi07G009540 vs. NCBI nr
Match: gi|449438971|ref|XP_004137261.1| (PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 62
          +V K+HR+MGVL+N EEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD
Sbjct: 38 RVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 85

[Close]
BLAST of Lsi07G009540 vs. NCBI nr
Match: gi|700198628|gb|KGN53786.1| (hypothetical protein Csa_4G129030 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-16
Identity = 42/48 (87.50%), Postives = 46/48 (95.83%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 62
          +V K+HR+MGVL+N EEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD
Sbjct: 23 RVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQD 70

[Close]
BLAST of Lsi07G009540 vs. NCBI nr
Match: gi|658052960|ref|XP_008362218.1| (PREDICTED: uncharacterized protein LOC103425898 [Malus domestica])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-15
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
          ++NKAHR+M VLEN EEGEKY+EH LR+FLRTRPPEIMPTINH+FSQ+K
Sbjct: 38 RINKAHRRMAVLENEEEGEKYAEHGLRKFLRTRPPEIMPTINHFFSQEK 86

[Close]
BLAST of Lsi07G009540 vs. NCBI nr
Match: gi|743820145|ref|XP_011021065.1| (PREDICTED: uncharacterized protein LOC105123251 [Populus euphratica])

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-15
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 1 

Query: 14 KVNKAHRKMGVLENGEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDK 63
          ++NKA+R MGVLEN EEGEKY+EH LR+FLRTRPPEIMPT+NH+FS+DK
Sbjct: 38 RINKANRGMGVLENKEEGEKYAEHGLRKFLRTRPPEIMPTVNHFFSEDK 86

The following BLAST results are available for this feature:
BLAST of Lsi07G009540 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi07G009540 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L0W9_CUCSA9.1e-1787.50Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129030 PE=4 SV=1[more]
B9N6M9_POPTR5.0e-1577.55Germination family protein OS=Populus trichocarpa GN=POPTR_0017s13320g PE=4 SV=1[more]
A0A067JNC6_JATCU8.5e-1573.47Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25584 PE=4 SV=1[more]
A0A0L9U2X2_PHAAN8.5e-1577.55Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g013500 PE=4 SV=1[more]
A0A0S3RRM9_PHAAN8.5e-1577.55Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G034700 PE=... [more]
BLAST of Lsi07G009540 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G29970.11.7e-1458.33 B12D protein[more]
AT3G48140.15.3e-0845.61 B12D protein[more]
BLAST of Lsi07G009540 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659129221|ref|XP_008464582.1|1.2e-1791.84PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo][more]
gi|449438971|ref|XP_004137261.1|1.3e-1687.50PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus][more]
gi|700198628|gb|KGN53786.1|1.3e-1687.50hypothetical protein Csa_4G129030 [Cucumis sativus][more]
gi|658052960|ref|XP_008362218.1|1.1e-1579.59PREDICTED: uncharacterized protein LOC103425898 [Malus domestica][more]
gi|743820145|ref|XP_011021065.1|4.2e-1577.55PREDICTED: uncharacterized protein LOC105123251 [Populus euphratica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi07G009540.1Lsi07G009540.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33417FAMILY NOT NAMEDcoord: 14..62
score: 1.6
NoneNo IPR availablePANTHERPTHR33417:SF1B12D PROTEINcoord: 14..62
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi07G009540Csa4G129030Cucumber (Chinese Long) v2culsiB313
Lsi07G009540CSPI04G10000Wild cucumber (PI 183967)cpilsiB312
Lsi07G009540Cucsa.174440Cucumber (Gy14) v1cgylsiB290
Lsi07G009540CmaCh14G011540Cucurbita maxima (Rimu)cmalsiB257
Lsi07G009540CmoCh14G011850Cucurbita moschata (Rifu)cmolsiB245
Lsi07G009540Cla010817Watermelon (97103) v1lsiwmB443
Lsi07G009540MELO3C026305Melon (DHL92) v3.5.1lsimeB448
Lsi07G009540ClCG07G015970Watermelon (Charleston Gray)lsiwcgB409
Lsi07G009540MELO3C026305.2Melon (DHL92) v3.6.1lsimedB466
Lsi07G009540Cla97C07G142980Watermelon (97103) v2lsiwmbB408
Lsi07G009540Bhi01G001733Wax gourdlsiwgoB556
Lsi07G009540Cp4.1LG03g15370Cucurbita pepo (Zucchini)cpelsiB517
Lsi07G009540CsGy4G009610Cucumber (Gy14) v2cgyblsiB286
Lsi07G009540CsaV3_4G010160Cucumber (Chinese Long) v3cuclsiB332
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi07G009540Bottle gourd (USVL1VR-Ls)lsilsiB119
Lsi07G009540Bottle gourd (USVL1VR-Ls)lsilsiB165
Lsi07G009540Cucumber (Gy14) v1cgylsiB158
Lsi07G009540Cucurbita maxima (Rimu)cmalsiB222
Lsi07G009540Cucurbita maxima (Rimu)cmalsiB448
Lsi07G009540Cucurbita moschata (Rifu)cmolsiB069
Lsi07G009540Cucurbita moschata (Rifu)cmolsiB210
Lsi07G009540Cucurbita moschata (Rifu)cmolsiB435
Lsi07G009540Cucurbita pepo (Zucchini)cpelsiB475
Lsi07G009540Wild cucumber (PI 183967)cpilsiB081
Lsi07G009540Cucumber (Chinese Long) v2culsiB083
Lsi07G009540Melon (DHL92) v3.5.1lsimeB429
Lsi07G009540Melon (DHL92) v3.5.1lsimeB434
Lsi07G009540Watermelon (Charleston Gray)lsiwcgB399
Lsi07G009540Watermelon (Charleston Gray)lsiwcgB405
Lsi07G009540Watermelon (97103) v1lsiwmB457
Lsi07G009540Watermelon (97103) v1lsiwmB460
Lsi07G009540Cucumber (Gy14) v2cgyblsiB077
Lsi07G009540Melon (DHL92) v3.6.1lsimedB454
Lsi07G009540Melon (DHL92) v3.6.1lsimedB449
Lsi07G009540Silver-seed gourdcarlsiB544
Lsi07G009540Silver-seed gourdcarlsiB640
Lsi07G009540Cucumber (Chinese Long) v3cuclsiB091
Lsi07G009540Watermelon (97103) v2lsiwmbB400
Lsi07G009540Watermelon (97103) v2lsiwmbB404
Lsi07G009540Wax gourdlsiwgoB573
Lsi07G009540Wax gourdlsiwgoB582