Cucsa.174440 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.174440
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	B12D protein
Location	scaffold01221 : 84580 .. 85661 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACGTTGGATGAAACCAGAGGTCAGCCCCCATAACTCTTTCTTTCTCTATTTCTCATACCATAGGGAGTAAAAAGAGATGTATACATCAAAGTTTATAGATAGATATAGAATTGATTTTAGTTGATAAACAAATGAGTTTTATTAGGTGATTTGGTAACTTGAAGGTTTATCCATTGTTGGCTGCCATGGGATTTGTCACAACTATGTGCATCTTTCAGCTTACTAGAAACATTCTCATCAATCCCGACGTTAGGTACTCTCTATTTTTATTCTATTATTTTACTTCTAATCATTATTAGGATTGTTTTTtATTTACAAAATTGTCAAAGAGATCAAAATTACATTTTATATATTTTTATAAAGCTTAAATAGTTCGTTTTCTATATATATATTATATATGTTTGAGAAAATTCTAAAATATTTACCATATTTATAAAGGTATCACAATAACAATATAGAGTTTGCTTGATAATCCATTTGTTTTCTGTTTTTtGGTTTTTAAAATTGATTTTTAAAAATTACGTTTTGTTTGGTAACTTATTCATATTTTTGTTTTCTAGACAAGAAACTTGTTTTTAAGATTATGAAAGAATATTGAAAATGAAAAAAAAaTACATTTTGTTTTTTTAAAAGAAAAAAaCATCGTTTTACTAAACATATATGATTTTTGTTTTTAATAAACAAAAGTTTAGAAATAGAATTTAAGAAACACAAGAAACAAAAACAAAAACTTGAAATGAGAAGTTGTTTTTGTTTTTGAAATTGAACTAAAACTTCAACATTGTGTTTGAATAGAAAATAAATTTAATGTTAGAAAACAAAAAATGGAATGGGTGGGAATTCATAAAGTAAACTATGGGTATTTTGTATAAAGAACAATAAATTTGTTGTAATATAAAAAaGAAATGTAATTTTGTGTATTGCAGAGTGAaGAAATCGCATCGTAGAATGGGAGTATTGGATAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCACTATTTTTCCCAAGACCACAAATAA

mRNA sequence

ATGGGACGTTGGATGAAACCAGAGGTTTATCCATTGTTGGCTGCCATGGGATTTGTCACAACTATGTGCATCTTTCAGCTTACTAGAAACATTCTCATCAATCCCGACGTTAGAGTGAAGAAATCGCATCGTAGAATGGGAGTATTGGATAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCACTATTTTTCCCAAGACCACAAATAA

Coding sequence (CDS)

ATGGGACGTTGGATGAAACCAGAGGTTTATCCATTGTTGGCTGCCATGGGATTTGTCACAACTATGTGCATCTTTCAGCTTACTAGAAACATTCTCATCAATCCCGACGTTAGAGTGAaGAAATCGCATCGTAGAATGGGAGTATTGGATAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCACTATTTTTCCCAAGACCACAAATAA

Protein sequence

MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDHK*

Homology

[Close]

BLAST of Cucsa.174440 vs. TrEMBL
Match: A0A0S3RRM9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G034700 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
           MGRWMKPEVYPLLAAM FVTTMC+FQLTRN+L NPDVR+ K+ R M VLDN EEGEKY+E
Sbjct: 57  MGRWMKPEVYPLLAAMTFVTTMCVFQLTRNVLQNPDVRINKTRRSMAVLDNREEGEKYAE 116

Query: 61  HSLRRFLRTRPPEIMPTINHYFSQD 86
           HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 117 HSLRKFLRTRPPEIMPTINHFFSQD 141

[Close]

BLAST of Cucsa.174440 vs. TrEMBL
Match: A0A0L9U2X2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g013500 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 2.1e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVTTMC+FQLTRN+L NPDVR+ K+ R M VLDN EEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTTMCVFQLTRNVLQNPDVRINKTRRSMAVLDNREEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 61 HSLRKFLRTRPPEIMPTINHFFSQD 85

[Close]

BLAST of Cucsa.174440 vs. TrEMBL
Match: A0A067JNC6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25584 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 2.8e-35
Identity = 67/85 (78.82%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVT+MC+FQLTRN+ +NPDVR+ K+HRRM VL+NE+EGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNVFLNPDVRINKAHRRMAVLENEDEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          H LR+FLRTRPPE+MP INH+FSQD
Sbjct: 61 HGLRKFLRTRPPEVMPAINHFFSQD 85

[Close]

BLAST of Cucsa.174440 vs. TrEMBL
Match: V7B3H1_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G028700g PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-34
Identity = 70/85 (82.35%), Postives = 77/85 (90.59%), Query Frame = 1


Query: 1   MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
           MGRWMKPEVYPLLAAM FVT+MC+FQLTRN+L NPDVRV K+ R M VLDN EEGEKY+E
Sbjct: 30  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNLLGNPDVRVNKTRRSMAVLDNREEGEKYAE 89

Query: 61  HSLRRFLRTRPPEIMPTINHYFSQD 86
           H LR+FLRTRPPEIMPTINH+FSQD
Sbjct: 90  HGLRKFLRTRPPEIMPTINHFFSQD 114

[Close]

BLAST of Cucsa.174440 vs. TrEMBL
Match: A0A0A0L0W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129030 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 2.4e-34
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1


Query: 16 MGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIM 75
          MGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIM
Sbjct: 1  MGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIM 60

Query: 76 PTINHYFSQDHK 88
          PTINHYFSQDHK
Sbjct: 61 PTINHYFSQDHK 72

[Close]

BLAST of Cucsa.174440 vs. TAIR10
Match: AT3G29970.1 (AT3G29970.1 B12D protein)

HSP 1 Score: 133.3 bits (334), Expect = 7.5e-32
Identity = 53/85 (62.35%), Postives = 75/85 (88.24%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRW++PEVYPLL AMGFVT+M +FQLTRN  +NPD R+ K HR+MG+L+N++EGEKY++
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          H+ R++LRTR P++MP++N +FSQ+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFSQE 85

[Close]

BLAST of Cucsa.174440 vs. TAIR10
Match: AT3G48140.1 (AT3G48140.1 B12D protein)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-21
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 3  RWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHS 62
          RW++PEVYPL AA G    +C F L RNI  NP+VR  K +R  G+LDN  EGEKY E+ 
Sbjct: 4  RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query: 63 LRRFLRTRPPEIMPTINHYFS 84
          LR+F+R + PEIMP +N +F+
Sbjct: 64 LRKFVRNKKPEIMPGLNKFFT 84

[Close]

BLAST of Cucsa.174440 vs. NCBI nr
Match: gi|449438971|ref|XP_004137261.1| (PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 8.0e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQDHK 88
          HSLRRFLRTRPPEIMPTINHYFSQDHK
Sbjct: 61 HSLRRFLRTRPPEIMPTINHYFSQDHK 87

[Close]

BLAST of Cucsa.174440 vs. NCBI nr
Match: gi|659129221|ref|XP_008464582.1| (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-39
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVT+MC+FQLTRNILINPDVRV K+HRRMGVL+NEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLRRFLRTRPPEIMPTIN YFSQD
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQD 85

[Close]

BLAST of Cucsa.174440 vs. NCBI nr
Match: gi|965668622|dbj|BAT83229.1| (hypothetical protein VIGAN_04034700 [Vigna angularis var. angularis])

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1   MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
           MGRWMKPEVYPLLAAM FVTTMC+FQLTRN+L NPDVR+ K+ R M VLDN EEGEKY+E
Sbjct: 57  MGRWMKPEVYPLLAAMTFVTTMCVFQLTRNVLQNPDVRINKTRRSMAVLDNREEGEKYAE 116

Query: 61  HSLRRFLRTRPPEIMPTINHYFSQD 86
           HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 117 HSLRKFLRTRPPEIMPTINHFFSQD 141

[Close]

BLAST of Cucsa.174440 vs. NCBI nr
Match: gi|920693529|gb|KOM36754.1| (hypothetical protein LR48_Vigan03g013500 [Vigna angularis])

HSP 1 Score: 156.0 bits (393), Expect = 3.1e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVTTMC+FQLTRN+L NPDVR+ K+ R M VLDN EEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTTMCVFQLTRNVLQNPDVRINKTRRSMAVLDNREEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 61 HSLRKFLRTRPPEIMPTINHFFSQD 85

[Close]

BLAST of Cucsa.174440 vs. NCBI nr
Match: gi|802751590|ref|XP_012088052.1| (PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas])

HSP 1 Score: 155.6 bits (392), Expect = 4.0e-35
Identity = 67/85 (78.82%), Postives = 79/85 (92.94%), Query Frame = 1


Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVT+MC+FQLTRN+ +NPDVR+ K+HRRM VL+NE+EGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNVFLNPDVRINKAHRRMAVLENEDEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          H LR+FLRTRPPE+MP INH+FSQD
Sbjct: 61 HGLRKFLRTRPPEVMPAINHFFSQD 85

The following BLAST results are available for this feature:

BLAST of Cucsa.174440 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0S3RRM9_PHAAN	2.1e-35	83.53	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G034700 PE=...	[more]
A0A0L9U2X2_PHAAN	2.1e-35	83.53	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan03g013500 PE=4 SV=1	[more]
A0A067JNC6_JATCU	2.8e-35	78.82	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25584 PE=4 SV=1	[more]
V7B3H1_PHAVU	2.4e-34	82.35	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G028700g PE=4 SV=1	[more]
A0A0A0L0W9_CUCSA	2.4e-34	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G129030 PE=4 SV=1	[more]

BLAST of Cucsa.174440 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29970.1	7.5e-32	62.35	B12D protein	[more]
AT3G48140.1	1.2e-21	54.32	B12D protein	[more]

BLAST of Cucsa.174440 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449438971\|ref\|XP_004137261.1\|	8.0e-44	100.00	PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus]	[more]
gi\|659129221\|ref\|XP_008464582.1\|	2.0e-39	92.94	PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo]	[more]
gi\|965668622\|dbj\|BAT83229.1\|	3.1e-35	83.53	hypothetical protein VIGAN_04034700 [Vigna angularis var. angularis]	[more]
gi\|920693529\|gb\|KOM36754.1\|	3.1e-35	83.53	hypothetical protein LR48_Vigan03g013500 [Vigna angularis]	[more]
gi\|802751590\|ref\|XP_012088052.1\|	4.0e-35	78.82	PREDICTED: uncharacterized protein LOC105646742 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010530	B12D

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.174440.1	Cucsa.174440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010530	NADH-ubiquinone reductase complex 1 MLRQ subunit	PFAM	PF06522	B12D	coord: 6..73 score: 2.5
None	No IPR available	PANTHER	PTHR33417	FAMILY NOT NAMED	coord: 1..87 score: 5.3
None	No IPR available	PANTHER	PTHR33417:SF1	B12D PROTEIN	coord: 1..87 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.174440	Cla010817	Watermelon (97103) v1	cgywmB332
Cucsa.174440	Csa4G129030	Cucumber (Chinese Long) v2	cgycuB266
Cucsa.174440	MELO3C026305	Melon (DHL92) v3.5.1	cgymeB308
Cucsa.174440	ClCG07G015970	Watermelon (Charleston Gray)	cgywcgB310
Cucsa.174440	CSPI04G10000	Wild cucumber (PI 183967)	cgycpiB276
Cucsa.174440	CmaCh14G011540	Cucurbita maxima (Rimu)	cgycmaB0494
Cucsa.174440	CmoCh14G011850	Cucurbita moschata (Rifu)	cgycmoB0496
Cucsa.174440	Lsi07G009540	Bottle gourd (USVL1VR-Ls)	cgylsiB290
Cucsa.174440	Cp4.1LG03g15370	Cucurbita pepo (Zucchini)	cgycpeB0481
Cucsa.174440	MELO3C026305.2	Melon (DHL92) v3.6.1	cgymedB302
Cucsa.174440	CsaV3_4G010160	Cucumber (Chinese Long) v3	cgycucB279
Cucsa.174440	Cla97C07G142980	Watermelon (97103) v2	cgywmbB315
Cucsa.174440	Bhi01G001733	Wax gourd	cgywgoB356

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.174440	Silver-seed gourd	carcgyB0781
Cucsa.174440	Wax gourd	cgywgoB357
Cucsa.174440	Cucumber (Gy14) v1	cgycgyB061
Cucsa.174440	Cucurbita maxima (Rimu)	cgycmaB0495
Cucsa.174440	Cucurbita moschata (Rifu)	cgycmoB0497
Cucsa.174440	Wild cucumber (PI 183967)	cgycpiB275
Cucsa.174440	Cucurbita pepo (Zucchini)	cgycpeB0480
Cucsa.174440	Melon (DHL92) v3.6.1	cgymedB301