CsaV3_4G010160 (gene) Cucumber (Chinese Long) v3

NameCsaV3_4G010160
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNADH-ubiquinone reductase complex 1 MLRQ subunit
Locationchr4 : 7954167 .. 7955626 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGCTTTTGCTTTATAAATATACACAACAATTCAATCCATTTGATCAACAAAATTAAACCATTGAATCACAAACCTTATAAACTTTATCAAACTATTCTCTTCCAATGGGACGTTGGATGAAACCAGAGGTCAGCCCCCATAACTCTTTCTTTCTCTATTTCTCATACCATAGGGAGTAAAAAGAGATGTATACATCAAAGTTTATAGATAGATATAGAATTGATTTTAGTTGATAAACAAATGAGTTTTATTAGGTGATTTGGTAACTTGAAGGTTTATCCATTGTTGGCTGCCATGGGATTTGTCACAACTATGTGCATCTTTCAGCTTACTAGAAACATTCTCATCAATCCCGACGTTAGGTACTCTCTATTTTTATTCTATTATTTTACTTCTAATCATTATTAGGATTGTTTTTTATTTACAAAATTGTCAAAGAGATCAAAATTACATTTTATATATTTTTATAAAGCTTAAATAGTTCGTTTTCTATATATATATTATATATGTTTGAGAAAATTCTAAAATATTTACCATATTTATAAAGGTATCACAATAACAATATAGAGTTTGCTTGATAATCCATTTGTTTTCTGTTTTTTGGTTTTTAAAATTGATTTTTAAAAATTACGTTTTGTTTGGTAACTTATTCATATTTTTGTTTTCTAGACAAGAAACTTGTTTTTAAGATTATGAAAGAATATTGAAAATGAAAAAAAAAATACATTTTGTTTTTTTAAAAGAAAAAAACATCGTTTTACTAAACATATATGATTTTTGTTTTTAATAAACAAAAGTTTAGAAATAGAATTTAAGAAACACAAGAAACAAAAACAAAAACTTGAAATGAGAAGTTGTTTTTGTTTTTGAAATTGAACTAAAACTTCAACATTGTGTTTGAATAGAAAATAAATTTAATGTTAGAAAACAAAAAATGGAATGGGTGGGAATTCATAAAGTAAACTATGGGTATTTTGTATAAAGAACAATAAATTTGTTGTAATATAAAAAAGAAATGTAATTTTGTGTATTGCAGAGTGAAGAAATCGCATCGTAGAATGGGAGTATTGGATAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCACTATTTTTCCCAAGACCACAAATAAATGATTTCAATTATCACACTTTCACTTAATTACTCCCAATTTCCTTTATTACACTCTCGACTTTCTGTTTTGTTTGCCTTTGCTTTATTTATGTCCCTTTTTTTCCTTTACGTAAGTGTAAGGTGGCTTGCCCACACATTGGGGATAATAACAATTATAGTATATATGTTCTATATATGATCTCATTTCTCTTTATACCATTCAACACTATTCTTTCTTGCTCTGATTCTAACTAGTAGAATCCAGATAATAATATATCAGTAAGGCAAC

mRNA sequence

ATGGGACGTTGGATGAAACCAGAGGTTTATCCATTGTTGGCTGCCATGGGATTTGTCACAACTATGTGCATCTTTCAGCTTACTAGAAACATTCTCATCAATCCCGACGTTAGAGTGAAGAAATCGCATCGTAGAATGGGAGTATTGGATAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCACTATTTTTCCCAAGACCACAAATAA

Coding sequence (CDS)

ATGGGACGTTGGATGAAACCAGAGGTTTATCCATTGTTGGCTGCCATGGGATTTGTCACAACTATGTGCATCTTTCAGCTTACTAGAAACATTCTCATCAATCCCGACGTTAGAGTGAAGAAATCGCATCGTAGAATGGGAGTATTGGATAACGAAGAGGAAGGAGAGAAGTATTCAGAGCATAGCCTCCGGCGGTTCCTCCGAACACGGCCACCGGAAATCATGCCAACAATTAATCACTATTTTTCCCAAGACCACAAATAA

Protein sequence

MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHSLRRFLRTRPPEIMPTINHYFSQDHK
BLAST of CsaV3_4G010160 vs. NCBI nr
Match: XP_004137261.1 (PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus])

HSP 1 Score: 184.5 bits (467), Expect = 1.6e-43
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQDHK 88
          HSLRRFLRTRPPEIMPTINHYFSQDHK
Sbjct: 61 HSLRRFLRTRPPEIMPTINHYFSQDHK 87

BLAST of CsaV3_4G010160 vs. NCBI nr
Match: XP_008464582.1 (PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 4.0e-39
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVT+MC+FQLTRNILINPDVRV K+HRRMGVL+NEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLRRFLRTRPPEIMPTIN YFSQD
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQD 85

BLAST of CsaV3_4G010160 vs. NCBI nr
Match: XP_022980760.1 (uncharacterized protein LOC111480034 [Cucurbita maxima])

HSP 1 Score: 163.7 bits (413), Expect = 2.8e-37
Identity = 75/85 (88.24%), Postives = 81/85 (95.29%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          M RW+KPEVYPL+AAMGFVTTMC+FQLTRNILINPDVRV K HRRMGVL+NEEEGEKY+E
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTMCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLRRFLRTRPPEIMPTIN +FSQD
Sbjct: 61 HSLRRFLRTRPPEIMPTINRFFSQD 85

BLAST of CsaV3_4G010160 vs. NCBI nr
Match: XP_022955974.1 (uncharacterized protein LOC111457808 [Cucurbita moschata])

HSP 1 Score: 160.6 bits (405), Expect = 2.4e-36
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          M RW+KPEVYPL+AAMGFVTT+C+FQLTRNILINPDVRV K HRRMGVL+NEEEGEKY+E
Sbjct: 1  MARWVKPEVYPLMAAMGFVTTLCVFQLTRNILINPDVRVNKEHRRMGVLENEEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLRRFLRTRPPEIMP IN +FSQD
Sbjct: 61 HSLRRFLRTRPPEIMPAINRFFSQD 85

BLAST of CsaV3_4G010160 vs. NCBI nr
Match: XP_022155075.1 (uncharacterized protein LOC111022208 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 5.4e-36
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVT+MC+FQLTRNIL+NPDVRV K+ R MGVL+N EEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILLNPDVRVNKTQRSMGVLENGEEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          H LRRFLRTRPPEIMPTINH+FSQD
Sbjct: 61 HRLRRFLRTRPPEIMPTINHFFSQD 85

BLAST of CsaV3_4G010160 vs. TAIR10
Match: AT3G29970.1 (B12D protein)

HSP 1 Score: 133.3 bits (334), Expect = 7.5e-32
Identity = 53/85 (62.35%), Postives = 75/85 (88.24%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRW++PEVYPLL AMGFVT+M +FQLTRN  +NPD R+ K HR+MG+L+N++EGEKY++
Sbjct: 1  MGRWVRPEVYPLLGAMGFVTSMVVFQLTRNAFLNPDCRINKEHRKMGILENKDEGEKYAQ 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          H+ R++LRTR P++MP++N +FSQ+
Sbjct: 61 HNFRKYLRTRQPQVMPSLNRFFSQE 85

BLAST of CsaV3_4G010160 vs. TAIR10
Match: AT3G48140.1 (B12D protein)

HSP 1 Score: 99.0 bits (245), Expect = 1.6e-21
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = 0

Query: 3  RWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSEHS 62
          RW++PEVYPL AA G    +C F L RNI  NP+VR  K +R  G+LDN  EGEKY E+ 
Sbjct: 4  RWLRPEVYPLFAATGVAVGICAFSLIRNITGNPEVRCTKENRAAGILDNHAEGEKYKENF 63

Query: 63 LRRFLRTRPPEIMPTINHYFS 84
          LR+F+R + PEIMP +N +F+
Sbjct: 64 LRKFVRNKKPEIMPGLNKFFT 84

BLAST of CsaV3_4G010160 vs. TrEMBL
Match: tr|A0A1S3CLU5|A0A1S3CLU5_CUCME (uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.6e-39
Identity = 79/85 (92.94%), Postives = 83/85 (97.65%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAMGFVT+MC+FQLTRNILINPDVRV K+HRRMGVL+NEEEGEKYSE
Sbjct: 1  MGRWMKPEVYPLLAAMGFVTSMCVFQLTRNILINPDVRVNKAHRRMGVLENEEEGEKYSE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLRRFLRTRPPEIMPTIN YFSQD
Sbjct: 61 HSLRRFLRTRPPEIMPTINRYFSQD 85

BLAST of CsaV3_4G010160 vs. TrEMBL
Match: tr|A0A0L9U2X2|A0A0L9U2X2_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g013500 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVTTMC+FQLTRN+L NPDVR+ K+ R M VLDN EEGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTTMCVFQLTRNVLQNPDVRINKTRRSMAVLDNREEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 61 HSLRKFLRTRPPEIMPTINHFFSQD 85

BLAST of CsaV3_4G010160 vs. TrEMBL
Match: tr|A0A0S3RRM9|A0A0S3RRM9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G034700 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 3.9e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1   MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
           MGRWMKPEVYPLLAAM FVTTMC+FQLTRN+L NPDVR+ K+ R M VLDN EEGEKY+E
Sbjct: 57  MGRWMKPEVYPLLAAMTFVTTMCVFQLTRNVLQNPDVRINKTRRSMAVLDNREEGEKYAE 116

Query: 61  HSLRRFLRTRPPEIMPTINHYFSQD 86
           HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 117 HSLRKFLRTRPPEIMPTINHFFSQD 141

BLAST of CsaV3_4G010160 vs. TrEMBL
Match: tr|A0A1S3TUZ5|A0A1S3TUZ5_VIGRR (uncharacterized protein LOC106759119 OS=Vigna radiata var. radiata OX=3916 GN=LOC106759119 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35
Identity = 71/85 (83.53%), Postives = 78/85 (91.76%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVT+MC+FQLTRN+L NPDVR+ K+ RRM VLDN EEGEKY E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNVLQNPDVRINKTRRRMAVLDNREEGEKYVE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          HSLR+FLRTRPPEIMPTINH+FSQD
Sbjct: 61 HSLRKFLRTRPPEIMPTINHFFSQD 85

BLAST of CsaV3_4G010160 vs. TrEMBL
Match: tr|A0A067JNC6|A0A067JNC6_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25584 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35
Identity = 67/85 (78.82%), Postives = 79/85 (92.94%), Query Frame = 0

Query: 1  MGRWMKPEVYPLLAAMGFVTTMCIFQLTRNILINPDVRVKKSHRRMGVLDNEEEGEKYSE 60
          MGRWMKPEVYPLLAAM FVT+MC+FQLTRN+ +NPDVR+ K+HRRM VL+NE+EGEKY+E
Sbjct: 1  MGRWMKPEVYPLLAAMTFVTSMCVFQLTRNVFLNPDVRINKAHRRMAVLENEDEGEKYAE 60

Query: 61 HSLRRFLRTRPPEIMPTINHYFSQD 86
          H LR+FLRTRPPE+MP INH+FSQD
Sbjct: 61 HGLRKFLRTRPPEVMPAINHFFSQD 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004137261.11.6e-43100.00PREDICTED: uncharacterized protein LOC101217963 [Cucumis sativus][more]
XP_008464582.14.0e-3992.94PREDICTED: uncharacterized protein LOC103502424 [Cucumis melo][more]
XP_022980760.12.8e-3788.24uncharacterized protein LOC111480034 [Cucurbita maxima][more]
XP_022955974.12.4e-3685.88uncharacterized protein LOC111457808 [Cucurbita moschata][more]
XP_022155075.15.4e-3685.88uncharacterized protein LOC111022208 [Momordica charantia][more]
Match NameE-valueIdentityDescription
AT3G29970.17.5e-3262.35B12D protein[more]
AT3G48140.11.6e-2154.32B12D protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A1S3CLU5|A0A1S3CLU5_CUCME2.6e-3992.94uncharacterized protein LOC103502424 OS=Cucumis melo OX=3656 GN=LOC103502424 PE=... [more]
tr|A0A0L9U2X2|A0A0L9U2X2_PHAAN3.9e-3583.53Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan03g013500 PE... [more]
tr|A0A0S3RRM9|A0A0S3RRM9_PHAAN3.9e-3583.53Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.04G... [more]
tr|A0A1S3TUZ5|A0A1S3TUZ5_VIGRR5.1e-3583.53uncharacterized protein LOC106759119 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
tr|A0A067JNC6|A0A067JNC6_JATCU5.1e-3578.82Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_25584 PE=4 SV=1[more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_4G010160.1CsaV3_4G010160.1mRNA


Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitPFAMPF06522B12Dcoord: 6..73
e-value: 1.5E-23
score: 82.3
NoneNo IPR availablePANTHERPTHR33417:SF1B12D PROTEINcoord: 1..86
NoneNo IPR availablePANTHERPTHR33417FAMILY NOT NAMEDcoord: 1..86

The following gene(s) are paralogous to this gene:

None