Lsi07G008950 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G008950
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DNA binding transcription factor
Location	chr07 : 10230349 .. 10230711 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCACTGCCTTTGGCGAGGATAAAGAAGATCATGAAGAAATCCGGAGAGGAGGTGAAGATGATCTCCGGCGAGGCTCCGATCGTTTTCTCGAAGGCGTGTGAACTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCCTCCGCCGCCGGAAACCTTGCTGAAAGTGAAACTATGTCGATACCTTTCTGA

mRNA sequence

ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCACTGCCTTTGGCGAGGATAAAGAAGATCATGAAGAAATCCGGAGAGGAGGTGAAGATGATCTCCGGCGAGGCTCCGATCGTTTTCTCGAAGGCGTGTGAACTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCCTCCGCCGCCGGAAACCTTGCTGAAAGTGAAACTATGTCGATACCTTTCTGA

Coding sequence (CDS)

ATGAGGCAAGCGGGAGCATATTCCGGCGTGATGTACTGGAAGACAGGGCCGCACTCACTGCCTTTGGCGAGGATAAAGAAGATCATGAAGAAATCCGGAGAGGAGGTGAAGATGATCTCCGGCGAGGCTCCGATCGTTTTCTCGAAGGCGTGTGAACTGTTCATCGAAGAATTGACGAGGAGATCGTGGATGATTGCGATGCAGAGCAAGAAGAGGATGCTTCACAAAGAGGATGTGGCTTCCGCCATTTTGGCCACTGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCGCCACCGCCTCCGCCGCCGGAAACCTTGCTGAAAGTGAAACTATGTCGATACCTTTCTGA

Protein sequence

MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETMSIPF

Homology

[Close]

BLAST of Lsi07G008950 vs. Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.0e-22
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLI------FNETAATASAAGNLAESETMSIPF 121
           D+A+AI  TD+FDFL+ ++        E AA+A   G +       +P+
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPY 184

[Close]

BLAST of Lsi07G008950 vs. Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 5.8e-21
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Lsi07G008950 vs. Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETAATASAAGNLAESET 116
           D+A+A+  TD+FDFL+ ++  E        G  AE+ T
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAAT 165

[Close]

BLAST of Lsi07G008950 vs. Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+A+  TD+FDFL+ ++  E
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE 159

[Close]

BLAST of Lsi07G008950 vs. Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-20
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           H+LPLARIKKIMK + E+V+MIS EAP++F+KACE+FI ELT R+W+   ++K+R L K 
Sbjct: 75  HTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 134

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TDVFDFL+ +I
Sbjct: 135 DIAAAISRTDVFDFLVDII 152

[Close]

BLAST of Lsi07G008950 vs. TrEMBL
Match: A0A0A0KZN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.0e-52
Identity = 109/118 (92.37%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTR 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETMSI 119
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET AT +A G+L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET-ATPAATGDLGESETISV 117

[Close]

BLAST of Lsi07G008950 vs. TrEMBL
Match: I1M3F6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G284000 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.0e-37
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMK SGE+VKMISGEAPI+FSKACELFIE
Sbjct: 1   MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEDVKMISGEAPIIFSKACELFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETM 117
           ELTRRSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ +  +     A N+ E ET+
Sbjct: 61  ELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSSSESHAVGGATNVMEVETI 120

[Close]

BLAST of Lsi07G008950 vs. TrEMBL
Match: A0A0B2RY75_GLYSO (Nuclear transcription factor Y subunit C-1 OS=Glycine soja GN=glysoja_001488 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 9.0e-37
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMK SGE+VKMISGEAPI+FSKACELFIE
Sbjct: 1   MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEDVKMISGEAPIIFSKACELFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETM 117
           ELTRRSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ +  +     A N+ E ET+
Sbjct: 61  ELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSSSESHAVGGATNVMEVETI 120

[Close]

BLAST of Lsi07G008950 vs. TrEMBL
Match: I1LUT9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G217200 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-36
Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMK SGE VKMISGEAPI+FSKAC+LFIE
Sbjct: 1   MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEGVKMISGEAPIIFSKACDLFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETM 117
           ELTRRSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ N  +     A N+ E ET+
Sbjct: 61  ELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSDSHAVGGATNVMEVETI 120

[Close]

BLAST of Lsi07G008950 vs. TrEMBL
Match: A0A0B2R742_GLYSO (Nuclear transcription factor Y subunit C-4 OS=Glycine soja GN=glysoja_007731 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-36
Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMK SGE VKMISGEAPI+FSKAC+LFIE
Sbjct: 1   MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEGVKMISGEAPIIFSKACDLFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETM 117
           ELTRRSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ N  +     A N+ E ET+
Sbjct: 61  ELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSDSHAVGGATNVMEVETI 120

[Close]

BLAST of Lsi07G008950 vs. TAIR10
Match: AT5G63470.1 (AT5G63470.1 nuclear factor Y, subunit C4)

HSP 1 Score: 105.5 bits (262), Expect = 2.3e-23
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLI------FNETAATASAAGNLAESETMSIPF 121
           D+A+AI  TD+FDFL+ ++        E AA+A   G +       +P+
Sbjct: 137 DIAAAITRTDIFDFLVDIVPREEIKEEEDAASALGGGGMVAPAASGVPY 184

[Close]

BLAST of Lsi07G008950 vs. TAIR10
Match: AT3G48590.1 (AT3G48590.1 nuclear factor Y, subunit C1)

HSP 1 Score: 101.7 bits (252), Expect = 3.3e-22
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]

BLAST of Lsi07G008950 vs. TAIR10
Match: AT1G54830.2 (AT1G54830.2 nuclear factor Y, subunit C3)

HSP 1 Score: 100.1 bits (248), Expect = 9.6e-22
Identity = 52/98 (53.06%), Postives = 70/98 (71.43%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETAATASAAGNLAESET 116
           D+A+A+  TD+FDFL+ ++  E        G  AE+ T
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVGAEAAT 165

[Close]

BLAST of Lsi07G008950 vs. TAIR10
Match: AT1G56170.1 (AT1G56170.1 nuclear factor Y, subunit C2)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-21
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           H+LPLARIKKIMK + E+V+MIS EAP++F+KACE+FI ELT R+W+   ++K+R L K 
Sbjct: 75  HTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 134

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TDVFDFL+ +I
Sbjct: 135 DIAAAISRTDVFDFLVDII 152

[Close]

BLAST of Lsi07G008950 vs. TAIR10
Match: AT1G08970.4 (AT1G08970.4 nuclear factor Y, subunit C9)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-21
Identity = 48/82 (58.54%), Postives = 65/82 (79.27%), Query Frame = 1


Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTRRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+A+  TD+FDFL+ ++  E
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPRE 159

[Close]

BLAST of Lsi07G008950 vs. NCBI nr
Match: gi|449457660|ref|XP_004146566.1| (PREDICTED: nuclear transcription factor Y subunit C-3-like [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 2.9e-52
Identity = 109/118 (92.37%), Postives = 114/118 (96.61%), Query Frame = 1


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTR 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETMSI 119
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET AT +A G+L ESET+S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET-ATPAATGDLGESETISV 117

[Close]

BLAST of Lsi07G008950 vs. NCBI nr
Match: gi|659102234|ref|XP_008452022.1| (PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo])

HSP 1 Score: 210.7 bits (535), Expect = 1.4e-51
Identity = 108/118 (91.53%), Postives = 113/118 (95.76%), Query Frame = 1


Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTR 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELT+
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETMSI 119
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAAT   AG++ ESE +S+
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAAT---AGDVGESENISV 115

[Close]

BLAST of Lsi07G008950 vs. NCBI nr
Match: gi|356546912|ref|XP_003541864.1| (PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max])

HSP 1 Score: 161.0 bits (406), Expect = 1.3e-36
Identity = 81/120 (67.50%), Postives = 99/120 (82.50%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMK SGE+VKMISGEAPI+FSKACELFIE
Sbjct: 1   MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEDVKMISGEAPIIFSKACELFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETM 117
           ELTRRSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ +  +     A N+ E ET+
Sbjct: 61  ELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSSSESHAVGGATNVMEVETI 120

[Close]

BLAST of Lsi07G008950 vs. NCBI nr
Match: gi|356543975|ref|XP_003540433.1| (PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max])

HSP 1 Score: 160.2 bits (404), Expect = 2.2e-36
Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMK SGE VKMISGEAPI+FSKAC+LFIE
Sbjct: 1   MRQAGAYSGLLCGGVSGRTGPHSLPLARIKKIMKNSGEGVKMISGEAPIIFSKACDLFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAATASAAGNLAESETM 117
           ELTRRSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ N  +     A N+ E ET+
Sbjct: 61  ELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSDSHAVGGATNVMEVETI 120

[Close]

BLAST of Lsi07G008950 vs. NCBI nr
Match: gi|566162320|ref|XP_002304485.2| (hypothetical protein POPTR_0003s12460g [Populus trichocarpa])

HSP 1 Score: 158.3 bits (399), Expect = 8.4e-36
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1


Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      KTGPHSLPLARIKKIMKKSG++VKMISGEAPIVFSKACELFIE
Sbjct: 1   MRQAGTYSGILSGGLSGKTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIE 60

Query: 61  ELTRRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET 101
           ELT+RSWMI +Q K+R LHKEDVASA+ ATD+FDFL+ L+ N +
Sbjct: 61  ELTQRSWMITIQGKRRTLHKEDVASAVTATDIFDFLVNLVSNSS 104

The following BLAST results are available for this feature:

BLAST of Lsi07G008950 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NFYC4_ARATH	4.0e-22	51.38	Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2...	[more]
NFYC1_ARATH	5.8e-21	63.29	Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1...	[more]
NFYC3_ARATH	1.7e-20	53.06	Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2...	[more]
NFYC9_ARATH	2.9e-20	58.54	Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2...	[more]
NFYC2_ARATH	2.9e-20	60.76	Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2...	[more]

BLAST of Lsi07G008950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZN6_CUCSA	2.0e-52	92.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049050 PE=4 SV=1	[more]
I1M3F6_SOYBN	9.0e-37	67.50	Uncharacterized protein OS=Glycine max GN=GLYMA_13G284000 PE=4 SV=1	[more]
A0A0B2RY75_GLYSO	9.0e-37	67.50	Nuclear transcription factor Y subunit C-1 OS=Glycine soja GN=glysoja_001488 PE=...	[more]
I1LUT9_SOYBN	1.5e-36	67.50	Uncharacterized protein OS=Glycine max GN=GLYMA_12G217200 PE=4 SV=1	[more]
A0A0B2R742_GLYSO	1.5e-36	67.50	Nuclear transcription factor Y subunit C-4 OS=Glycine soja GN=glysoja_007731 PE=...	[more]

BLAST of Lsi07G008950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G63470.1	2.3e-23	51.38	nuclear factor Y, subunit C4	[more]
AT3G48590.1	3.3e-22	63.29	nuclear factor Y, subunit C1	[more]
AT1G54830.2	9.6e-22	53.06	nuclear factor Y, subunit C3	[more]
AT1G56170.1	1.6e-21	60.76	nuclear factor Y, subunit C2	[more]
AT1G08970.4	1.6e-21	58.54	nuclear factor Y, subunit C9	[more]

BLAST of Lsi07G008950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457660\|ref\|XP_004146566.1\|	2.9e-52	92.37	PREDICTED: nuclear transcription factor Y subunit C-3-like [Cucumis sativus]	[more]
gi\|659102234\|ref\|XP_008452022.1\|	1.4e-51	91.53	PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo]	[more]
gi\|356546912\|ref\|XP_003541864.1\|	1.3e-36	67.50	PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max]	[more]
gi\|356543975\|ref\|XP_003540433.1\|	2.2e-36	67.50	PREDICTED: nuclear transcription factor Y subunit C-1-like [Glycine max]	[more]
gi\|566162320\|ref\|XP_002304485.2\|	8.4e-36	75.00	hypothetical protein POPTR_0003s12460g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046982	protein heterodimerization activity

Vocabulary: **INTERPRO**
Term	Definition
IPR009072	Histone-fold
IPR003958	CBFA_NFYB_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0016602	CCAAT-binding factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi07G008950.1	Lsi07G008950.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 19..83 score: 5.0
IPR009072	Histone-fold	GENE3D	G3DSA:1.10.20.10		coord: 15..83 score: 1.2
IPR009072	Histone-fold	unknown	SSF47113	Histone-fold	coord: 15..92 score: 8.23
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 14..118 score: 2.3
None	No IPR available	PANTHER	PTHR10252:SF41	SUBFAMILY NOT NAMED	coord: 14..118 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi07G008950	Csa4G049050	Cucumber (Chinese Long) v2	culsiB306
Lsi07G008950	CSPI04G05850	Wild cucumber (PI 183967)	cpilsiB306
Lsi07G008950	Cucsa.106870	Cucumber (Gy14) v1	cgylsiB141
Lsi07G008950	CmaCh16G005880	Cucurbita maxima (Rimu)	cmalsiB328
Lsi07G008950	CmoCh16G006370	Cucurbita moschata (Rifu)	cmolsiB317
Lsi07G008950	Cla014640	Watermelon (97103) v1	lsiwmB446
Lsi07G008950	MELO3C016347	Melon (DHL92) v3.5.1	lsimeB457
Lsi07G008950	ClCG07G008020	Watermelon (Charleston Gray)	lsiwcgB415
Lsi07G008950	MELO3C016347.2	Melon (DHL92) v3.6.1	lsimedB475
Lsi07G008950	Cla97C07G135160	Watermelon (97103) v2	lsiwmbB414
Lsi07G008950	Bhi01G001796	Wax gourd	lsiwgoB556
Lsi07G008950	Cp4.1LG14g02160	Cucurbita pepo (Zucchini)	cpelsiB187
Lsi07G008950	Carg22207	Silver-seed gourd	carlsiB535
Lsi07G008950	CsaV3_4G006020	Cucumber (Chinese Long) v3	cuclsiB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi07G008950	Cucurbita maxima (Rimu)	cmalsiB700
Lsi07G008950	Cucurbita moschata (Rifu)	cmolsiB694
Lsi07G008950	Cucurbita pepo (Zucchini)	cpelsiB379
Lsi07G008950	Cucumber (Gy14) v2	cgyblsiB280
Lsi07G008950	Silver-seed gourd	carlsiB860