CSPI04G05850 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI04G05850
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionNuclear transcription factor Y protein
LocationChr4 : 3962012 .. 3962784 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAATTATCATAAACCTTCCCTTAATCATGATTCCATTTGTTAAAATAAACAAAAAAAAAAGTGTTAATTAGACTGAGTAACCTTAATCGGAGGAGCAGGCTGGCCGGCCGCAGTAGCATTCCAATTTCCACAACCTCTATAAATTCACAATCCTCCTTTCATGAATCTTCAATAGAAATCTCGAAGAATCTCCGGCTGTTTTCCGATCCAATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAGTGAAACTATTTCGGTAGGTTGTTGAAACTTAAAAGAATGGATTGAAGTGTTCTCCATTTCTCTCTGTTTGGAGTGAATTGAAATTTCAATTTGTCAATCTATGATAAAATGTAAAATATGATTCTCATATCTGTGGTTCCATTTATAACAAACAATTTCAGTTATGTCTTTCTCTCCCACTTAAATTATCAAAACAATCATACTCAAAAAATTTCAATGTATCGTAATG

mRNA sequence

ATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAGTGAAACTATTTCGGTAG

Coding sequence (CDS)

ATGAGGCAAGCGGGGGCATATTCCGGCGTGATGTACTGGAAAACAGGACCACACTCGCTGCCGTTAGCGAGGATAAAGAAGATCATGAAGAAATCGGGAGAGGAGGTGAAGATGATCTCCGGTGAGGCTCCGATCGTGTTCTCGAAGGCGTGTGAATTGTTCATCGAAGAATTGACGAAGAGATCGTGGATGATTGCGATGCAGAGTAAGAAGAGGATGCTTCATAAAGAGGATGTGGCTTCCGCTATTCTGGCTACGGATGTTTTCGATTTTCTGATCGGATTGATCTTCAATGAAACCGCCACTCCCGCCGCCACCGGAGATCTTGGTGAAGTGAAACTATTTCGGTAG
Homology
[Close]
BLAST of CSPI04G05850 vs. Swiss-Prot
Match: NFYC4_ARATH (Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-21
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]
BLAST of CSPI04G05850 vs. Swiss-Prot
Match: NFYC3_ARATH (Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.3e-21
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLG 111
           D+A+A+  TD+FDFL+ ++  E       G +G
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVG 160

[Close]
BLAST of CSPI04G05850 vs. Swiss-Prot
Match: NFYC1_ARATH (Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.4e-21
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]
BLAST of CSPI04G05850 vs. Swiss-Prot
Match: NFYC9_ARATH (Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.7e-21
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDL 110
           D+A+A+  TD+FDFL+ ++  E       G +
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGSI 169

[Close]
BLAST of CSPI04G05850 vs. Swiss-Prot
Match: NFYC2_ARATH (Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 3.7e-20
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H+LPLARIKKIMK + E+V+MIS EAP++F+KACE+FI ELT R+W+   ++K+R L K 
Sbjct: 75  HTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 134

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TDVFDFL+ +I
Sbjct: 135 DIAAAISRTDVFDFLVDII 152

[Close]
BLAST of CSPI04G05850 vs. TrEMBL
Match: A0A0A0KZN6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049050 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 3.2e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE 112
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE 111

[Close]
BLAST of CSPI04G05850 vs. TrEMBL
Match: B9RC88_RICCO (Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_1686190 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 4.4e-36
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      +TGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFI+
Sbjct: 1   MRQAGIYSGILCGGLSGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIQ 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFN 99
           ELTKRSWM+ MQ K++ LHKEDVASA++ATD+FDFL+ L+ N
Sbjct: 61  ELTKRSWMVTMQGKRKTLHKEDVASAVIATDIFDFLVNLVDN 102

[Close]
BLAST of CSPI04G05850 vs. TrEMBL
Match: B9GWG1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12460g PE=4 SV=2)

HSP 1 Score: 158.3 bits (399), Expect = 5.7e-36
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      KTGPHSLPLARIKKIMKKSG++VKMISGEAPIVFSKACELFIE
Sbjct: 1   MRQAGTYSGILSGGLSGKTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIE 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET 101
           ELT+RSWMI +Q K+R LHKEDVASA+ ATD+FDFL+ L+ N +
Sbjct: 61  ELTQRSWMITIQGKRRTLHKEDVASAVTATDIFDFLVNLVSNSS 104

[Close]
BLAST of CSPI04G05850 vs. TrEMBL
Match: A0A067K0Y6_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20620 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 7.4e-36
Identity = 77/106 (72.64%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      +TGPHSLPLARIKKIMKKSG++VKMISGEAPIVFSKACELFI+
Sbjct: 1   MRQAGTYSGLLCGGLSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIK 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAT 103
           ELT+RSWM+ MQ K+R LHKEDVASA++ATD+FDFL+ L+ N  +T
Sbjct: 61  ELTQRSWMVTMQGKRRTLHKEDVASAVIATDIFDFLVNLVDNNHST 106

[Close]
BLAST of CSPI04G05850 vs. TrEMBL
Match: A0A151RNI3_CAJCA (Nuclear transcription factor Y subunit C-1 OS=Cajanus cajan GN=KK1_034434 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.7e-35
Identity = 81/120 (67.50%), Postives = 98/120 (81.67%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAGAYSG++      +TGPHSLPLARIKKIMKKSGE+VKMISGEAPI+FSKACELFI+
Sbjct: 1   MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIIFSKACELFIQ 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET---ATPAATGDLGEVK 114
           ELT RSW++A+Q K+R LHKED+ASA++ATD+FDFLI L+ N     A  A T  + EV+
Sbjct: 61  ELTTRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSENSHAIGATTSTVMEVE 120

[Close]
BLAST of CSPI04G05850 vs. TAIR10
Match: AT1G54830.2 (AT1G54830.2 nuclear factor Y, subunit C3)

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 50/93 (53.76%), Postives = 68/93 (73.12%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 69  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 128

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDLG 111
           D+A+A+  TD+FDFL+ ++  E       G +G
Sbjct: 129 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGGVG 160

[Close]
BLAST of CSPI04G05850 vs. TAIR10
Match: AT5G63470.1 (AT5G63470.1 nuclear factor Y, subunit C4)

HSP 1 Score: 102.4 bits (254), Expect = 1.9e-22
Identity = 51/82 (62.20%), Postives = 66/82 (80.49%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 77  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 136

Query: 78  DVASAILATDVFDFLIGLIFNE 100
           D+A+AI  TD+FDFL+ ++  E
Sbjct: 137 DIAAAITRTDIFDFLVDIVPRE 157

[Close]
BLAST of CSPI04G05850 vs. TAIR10
Match: AT3G48590.1 (AT3G48590.1 nuclear factor Y, subunit C1)

HSP 1 Score: 101.3 bits (251), Expect = 4.2e-22
Identity = 50/79 (63.29%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H LPLARIKKIMK + E+V+MIS EAPI+F+KACELFI ELT RSW+ A ++K+R L K 
Sbjct: 64  HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 123

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TD+FDFL+ ++
Sbjct: 124 DIAAAITRTDIFDFLVDIV 141

[Close]
BLAST of CSPI04G05850 vs. TAIR10
Match: AT1G08970.4 (AT1G08970.4 nuclear factor Y, subunit C9)

HSP 1 Score: 100.9 bits (250), Expect = 5.5e-22
Identity = 49/92 (53.26%), Postives = 67/92 (72.83%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           HSLPLARIKKIMK + E+V+MIS EAP+VF++ACE+FI ELT RSW    ++K+R L K 
Sbjct: 79  HSLPLARIKKIMK-ADEDVRMISAEAPVVFARACEMFILELTLRSWNHTEENKRRTLQKN 138

Query: 78  DVASAILATDVFDFLIGLIFNETATPAATGDL 110
           D+A+A+  TD+FDFL+ ++  E       G +
Sbjct: 139 DIAAAVTRTDIFDFLVDIVPREDLRDEVLGSI 169

[Close]
BLAST of CSPI04G05850 vs. TAIR10
Match: AT1G56170.1 (AT1G56170.1 nuclear factor Y, subunit C2)

HSP 1 Score: 99.0 bits (245), Expect = 2.1e-21
Identity = 48/79 (60.76%), Postives = 65/79 (82.28%), Query Frame = 1 

Query: 18  HSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTKRSWMIAMQSKKRMLHKE 77
           H+LPLARIKKIMK + E+V+MIS EAP++F+KACE+FI ELT R+W+   ++K+R L K 
Sbjct: 75  HTLPLARIKKIMK-ADEDVRMISAEAPVIFAKACEMFILELTLRAWIHTEENKRRTLQKN 134

Query: 78  DVASAILATDVFDFLIGLI 97
           D+A+AI  TDVFDFL+ +I
Sbjct: 135 DIAAAISRTDVFDFLVDII 152

[Close]
BLAST of CSPI04G05850 vs. NCBI nr
Match: gi|449457660|ref|XP_004146566.1| (PREDICTED: nuclear transcription factor Y subunit C-3-like [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 4.6e-55
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE 112
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE 111

[Close]
BLAST of CSPI04G05850 vs. NCBI nr
Match: gi|659102234|ref|XP_008452022.1| (PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 9.0e-51
Identity = 106/111 (95.50%), Postives = 107/111 (96.40%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60
           MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK
Sbjct: 1   MRQAGAYSGVMYWKTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIEELTK 60

Query: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETATPAATGDLGE 112
           RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA  A  GD+GE
Sbjct: 61  RSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETA--ATAGDVGE 109

[Close]
BLAST of CSPI04G05850 vs. NCBI nr
Match: gi|223549671|gb|EEF51159.1| (ccaat-binding transcription factor, putative [Ricinus communis])

HSP 1 Score: 158.7 bits (400), Expect = 6.3e-36
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      +TGPHSLPLARIKKIMKKSGE+VKMISGEAPIVFSKACELFI+
Sbjct: 1   MRQAGIYSGILCGGLSGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIQ 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFN 99
           ELTKRSWM+ MQ K++ LHKEDVASA++ATD+FDFL+ L+ N
Sbjct: 61  ELTKRSWMVTMQGKRKTLHKEDVASAVIATDIFDFLVNLVDN 102

[Close]
BLAST of CSPI04G05850 vs. NCBI nr
Match: gi|566162320|ref|XP_002304485.2| (hypothetical protein POPTR_0003s12460g [Populus trichocarpa])

HSP 1 Score: 158.3 bits (399), Expect = 8.2e-36
Identity = 78/104 (75.00%), Postives = 90/104 (86.54%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      KTGPHSLPLARIKKIMKKSG++VKMISGEAPIVFSKACELFIE
Sbjct: 1   MRQAGTYSGILSGGLSGKTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIE 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNET 101
           ELT+RSWMI +Q K+R LHKEDVASA+ ATD+FDFL+ L+ N +
Sbjct: 61  ELTQRSWMITIQGKRRTLHKEDVASAVTATDIFDFLVNLVSNSS 104

[Close]
BLAST of CSPI04G05850 vs. NCBI nr
Match: gi|802741967|ref|XP_012087210.1| (PREDICTED: nuclear transcription factor Y subunit C-3-like [Jatropha curcas])

HSP 1 Score: 157.9 bits (398), Expect = 1.1e-35
Identity = 77/106 (72.64%), Postives = 92/106 (86.79%), Query Frame = 1 

Query: 1   MRQAGAYSGVMYW----KTGPHSLPLARIKKIMKKSGEEVKMISGEAPIVFSKACELFIE 60
           MRQAG YSG++      +TGPHSLPLARIKKIMKKSG++VKMISGEAPIVFSKACELFI+
Sbjct: 1   MRQAGTYSGLLCGGLSGRTGPHSLPLARIKKIMKKSGDDVKMISGEAPIVFSKACELFIK 60

Query: 61  ELTKRSWMIAMQSKKRMLHKEDVASAILATDVFDFLIGLIFNETAT 103
           ELT+RSWM+ MQ K+R LHKEDVASA++ATD+FDFL+ L+ N  +T
Sbjct: 61  ELTQRSWMVTMQGKRRTLHKEDVASAVIATDIFDFLVNLVDNNHST 106

The following BLAST results are available for this feature:
BLAST of CSPI04G05850 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NFYC4_ARATH3.3e-2162.20Nuclear transcription factor Y subunit C-4 OS=Arabidopsis thaliana GN=NFYC4 PE=2... [more]
NFYC3_ARATH3.3e-2153.76Nuclear transcription factor Y subunit C-3 OS=Arabidopsis thaliana GN=NFYC3 PE=2... [more]
NFYC1_ARATH7.4e-2163.29Nuclear transcription factor Y subunit C-1 OS=Arabidopsis thaliana GN=NFYC1 PE=1... [more]
NFYC9_ARATH9.7e-2153.26Nuclear transcription factor Y subunit C-9 OS=Arabidopsis thaliana GN=NFYC9 PE=2... [more]
NFYC2_ARATH3.7e-2060.76Nuclear transcription factor Y subunit C-2 OS=Arabidopsis thaliana GN=NFYC2 PE=2... [more]
BLAST of CSPI04G05850 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KZN6_CUCSA3.2e-55100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G049050 PE=4 SV=1[more]
B9RC88_RICCO4.4e-3675.49Ccaat-binding transcription factor, putative OS=Ricinus communis GN=RCOM_1686190... [more]
B9GWG1_POPTR5.7e-3675.00Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s12460g PE=4 SV=2[more]
A0A067K0Y6_JATCU7.4e-3672.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20620 PE=4 SV=1[more]
A0A151RNI3_CAJCA1.7e-3567.50Nuclear transcription factor Y subunit C-1 OS=Cajanus cajan GN=KK1_034434 PE=4 S... [more]
BLAST of CSPI04G05850 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G54830.21.9e-2253.76 nuclear factor Y, subunit C3[more]
AT5G63470.11.9e-2262.20 nuclear factor Y, subunit C4[more]
AT3G48590.14.2e-2263.29 nuclear factor Y, subunit C1[more]
AT1G08970.45.5e-2253.26 nuclear factor Y, subunit C9[more]
AT1G56170.12.1e-2160.76 nuclear factor Y, subunit C2[more]
BLAST of CSPI04G05850 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457660|ref|XP_004146566.1|4.6e-55100.00PREDICTED: nuclear transcription factor Y subunit C-3-like [Cucumis sativus][more]
gi|659102234|ref|XP_008452022.1|9.0e-5195.50PREDICTED: nuclear transcription factor Y subunit C-1-like [Cucumis melo][more]
gi|223549671|gb|EEF51159.1|6.3e-3675.49ccaat-binding transcription factor, putative [Ricinus communis][more]
gi|566162320|ref|XP_002304485.2|8.2e-3675.00hypothetical protein POPTR_0003s12460g [Populus trichocarpa][more]
gi|802741967|ref|XP_012087210.1|1.1e-3572.64PREDICTED: nuclear transcription factor Y subunit C-3-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR003958CBFA_NFYB_domain
IPR009072Histone-fold
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0016602 CCAAT-binding factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G05850.1CSPI04G05850.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003958Transcription factor CBF/NF-Y/archaeal histone domainPFAMPF00808CBFD_NFYB_HMFcoord: 19..83
score: 3.0
IPR009072Histone-foldGENE3DG3DSA:1.10.20.10coord: 15..83
score: 1.3
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 15..92
score: 1.09
NoneNo IPR availablePANTHERPTHR10252HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATEDcoord: 14..107
score: 1.0
NoneNo IPR availablePANTHERPTHR10252:SF41SUBFAMILY NOT NAMEDcoord: 14..107
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI04G05850Cla014640Watermelon (97103) v1cpiwmB313
CSPI04G05850Csa4G049050Cucumber (Chinese Long) v2cpicuB182
CSPI04G05850MELO3C016347Melon (DHL92) v3.5.1cpimeB310
CSPI04G05850ClCG07G008020Watermelon (Charleston Gray)cpiwcgB342
CSPI04G05850Lsi07G008950Bottle gourd (USVL1VR-Ls)cpilsiB306
CSPI04G05850MELO3C016347.2Melon (DHL92) v3.6.1cpimedB301
CSPI04G05850CsaV3_4G006020Cucumber (Chinese Long) v3cpicucB213
CSPI04G05850Cla97C07G135160Watermelon (97103) v2cpiwmbB332
CSPI04G05850Bhi01G001796Wax gourdcpiwgoB378
CSPI04G05850Cucsa.106870Cucumber (Gy14) v1cgycpiB130
CSPI04G05850CmaCh16G005880Cucurbita maxima (Rimu)cmacpiB342
CSPI04G05850CmoCh16G006370Cucurbita moschata (Rifu)cmocpiB332
CSPI04G05850Cp4.1LG14g02160Cucurbita pepo (Zucchini)cpecpiB223
CSPI04G05850Carg22207Silver-seed gourdcarcpiB0623
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI04G05850Watermelon (97103) v2cpiwmbB276
CSPI04G05850Watermelon (97103) v2cpiwmbB321
CSPI04G05850Wild cucumber (PI 183967)cpicpiB108
CSPI04G05850Wild cucumber (PI 183967)cpicpiB157
CSPI04G05850Wild cucumber (PI 183967)cpicpiB158
CSPI04G05850Cucumber (Gy14) v1cgycpiB385
CSPI04G05850Cucumber (Gy14) v1cgycpiB456
CSPI04G05850Cucurbita maxima (Rimu)cmacpiB295
CSPI04G05850Cucurbita maxima (Rimu)cmacpiB721
CSPI04G05850Cucurbita moschata (Rifu)cmocpiB285
CSPI04G05850Cucurbita moschata (Rifu)cmocpiB715
CSPI04G05850Cucumber (Chinese Long) v2cpicuB179
CSPI04G05850Cucumber (Chinese Long) v2cpicuB195
CSPI04G05850Cucumber (Chinese Long) v2cpicuB196
CSPI04G05850Melon (DHL92) v3.5.1cpimeB260
CSPI04G05850Melon (DHL92) v3.5.1cpimeB261
CSPI04G05850Melon (DHL92) v3.5.1cpimeB291
CSPI04G05850Watermelon (Charleston Gray)cpiwcgB299
CSPI04G05850Watermelon (Charleston Gray)cpiwcgB302
CSPI04G05850Watermelon (Charleston Gray)cpiwcgB331
CSPI04G05850Watermelon (97103) v1cpiwmB329
CSPI04G05850Watermelon (97103) v1cpiwmB334
CSPI04G05850Watermelon (97103) v1cpiwmB337
CSPI04G05850Cucurbita pepo (Zucchini)cpecpiB175
CSPI04G05850Cucurbita pepo (Zucchini)cpecpiB405
CSPI04G05850Bottle gourd (USVL1VR-Ls)cpilsiB244
CSPI04G05850Bottle gourd (USVL1VR-Ls)cpilsiB298
CSPI04G05850Melon (DHL92) v3.6.1cpimedB256
CSPI04G05850Melon (DHL92) v3.6.1cpimedB257
CSPI04G05850Melon (DHL92) v3.6.1cpimedB285
CSPI04G05850Cucumber (Gy14) v2cgybcpiB125
CSPI04G05850Cucumber (Gy14) v2cgybcpiB168
CSPI04G05850Cucumber (Gy14) v2cgybcpiB224
CSPI04G05850Silver-seed gourdcarcpiB0981
CSPI04G05850Cucumber (Chinese Long) v3cpicucB210
CSPI04G05850Cucumber (Chinese Long) v3cpicucB236
CSPI04G05850Cucumber (Chinese Long) v3cpicucB237